GO Enrichment Analysis of Co-expressed Genes with
AT2G45740
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene | 0.00E+00 |
| 2 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 3 | GO:0009106: lipoate metabolic process | 0.00E+00 |
| 4 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 5 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 6 | GO:0008298: intracellular mRNA localization | 0.00E+00 |
| 7 | GO:0009249: protein lipoylation | 0.00E+00 |
| 8 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 8.20E-07 |
| 9 | GO:0016117: carotenoid biosynthetic process | 9.50E-07 |
| 10 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.36E-05 |
| 11 | GO:0006546: glycine catabolic process | 1.36E-05 |
| 12 | GO:0009902: chloroplast relocation | 1.36E-05 |
| 13 | GO:0000023: maltose metabolic process | 1.27E-04 |
| 14 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 1.27E-04 |
| 15 | GO:0010362: negative regulation of anion channel activity by blue light | 1.27E-04 |
| 16 | GO:0006438: valyl-tRNA aminoacylation | 1.27E-04 |
| 17 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.27E-04 |
| 18 | GO:0006659: phosphatidylserine biosynthetic process | 1.27E-04 |
| 19 | GO:0009853: photorespiration | 2.51E-04 |
| 20 | GO:0009767: photosynthetic electron transport chain | 2.83E-04 |
| 21 | GO:0009629: response to gravity | 2.94E-04 |
| 22 | GO:0007154: cell communication | 2.94E-04 |
| 23 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.94E-04 |
| 24 | GO:0019253: reductive pentose-phosphate cycle | 3.20E-04 |
| 25 | GO:0000913: preprophase band assembly | 4.86E-04 |
| 26 | GO:0031022: nuclear migration along microfilament | 4.86E-04 |
| 27 | GO:0006000: fructose metabolic process | 4.86E-04 |
| 28 | GO:0006696: ergosterol biosynthetic process | 4.86E-04 |
| 29 | GO:0006730: one-carbon metabolic process | 5.89E-04 |
| 30 | GO:0080092: regulation of pollen tube growth | 5.89E-04 |
| 31 | GO:0010239: chloroplast mRNA processing | 6.95E-04 |
| 32 | GO:0006241: CTP biosynthetic process | 6.95E-04 |
| 33 | GO:0006165: nucleoside diphosphate phosphorylation | 6.95E-04 |
| 34 | GO:0006228: UTP biosynthetic process | 6.95E-04 |
| 35 | GO:0016556: mRNA modification | 6.95E-04 |
| 36 | GO:0033014: tetrapyrrole biosynthetic process | 6.95E-04 |
| 37 | GO:2001141: regulation of RNA biosynthetic process | 6.95E-04 |
| 38 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 6.95E-04 |
| 39 | GO:0048442: sepal development | 9.21E-04 |
| 40 | GO:0006183: GTP biosynthetic process | 9.21E-04 |
| 41 | GO:0006021: inositol biosynthetic process | 9.21E-04 |
| 42 | GO:0016120: carotene biosynthetic process | 1.16E-03 |
| 43 | GO:0009904: chloroplast accumulation movement | 1.16E-03 |
| 44 | GO:0010236: plastoquinone biosynthetic process | 1.16E-03 |
| 45 | GO:0009107: lipoate biosynthetic process | 1.16E-03 |
| 46 | GO:1902183: regulation of shoot apical meristem development | 1.16E-03 |
| 47 | GO:0016123: xanthophyll biosynthetic process | 1.16E-03 |
| 48 | GO:0070814: hydrogen sulfide biosynthetic process | 1.43E-03 |
| 49 | GO:0006559: L-phenylalanine catabolic process | 1.43E-03 |
| 50 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 1.43E-03 |
| 51 | GO:0042026: protein refolding | 1.71E-03 |
| 52 | GO:0010076: maintenance of floral meristem identity | 1.71E-03 |
| 53 | GO:0006458: 'de novo' protein folding | 1.71E-03 |
| 54 | GO:0017148: negative regulation of translation | 1.71E-03 |
| 55 | GO:0009903: chloroplast avoidance movement | 1.71E-03 |
| 56 | GO:0008610: lipid biosynthetic process | 2.32E-03 |
| 57 | GO:0006002: fructose 6-phosphate metabolic process | 2.65E-03 |
| 58 | GO:0071482: cellular response to light stimulus | 2.65E-03 |
| 59 | GO:0006075: (1->3)-beta-D-glucan biosynthetic process | 2.65E-03 |
| 60 | GO:0048193: Golgi vesicle transport | 2.65E-03 |
| 61 | GO:0009657: plastid organization | 2.65E-03 |
| 62 | GO:2000024: regulation of leaf development | 3.00E-03 |
| 63 | GO:0006783: heme biosynthetic process | 3.00E-03 |
| 64 | GO:0009744: response to sucrose | 3.19E-03 |
| 65 | GO:0009638: phototropism | 3.36E-03 |
| 66 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.36E-03 |
| 67 | GO:1900865: chloroplast RNA modification | 3.36E-03 |
| 68 | GO:0009970: cellular response to sulfate starvation | 3.73E-03 |
| 69 | GO:0048441: petal development | 3.73E-03 |
| 70 | GO:0000103: sulfate assimilation | 3.73E-03 |
| 71 | GO:0010192: mucilage biosynthetic process | 3.73E-03 |
| 72 | GO:0006810: transport | 3.75E-03 |
| 73 | GO:0046777: protein autophosphorylation | 3.93E-03 |
| 74 | GO:0009773: photosynthetic electron transport in photosystem I | 4.12E-03 |
| 75 | GO:0006415: translational termination | 4.12E-03 |
| 76 | GO:0019684: photosynthesis, light reaction | 4.12E-03 |
| 77 | GO:0006352: DNA-templated transcription, initiation | 4.12E-03 |
| 78 | GO:0005983: starch catabolic process | 4.52E-03 |
| 79 | GO:0005986: sucrose biosynthetic process | 4.93E-03 |
| 80 | GO:0006006: glucose metabolic process | 4.93E-03 |
| 81 | GO:0006094: gluconeogenesis | 4.93E-03 |
| 82 | GO:0048440: carpel development | 5.36E-03 |
| 83 | GO:0042343: indole glucosinolate metabolic process | 5.80E-03 |
| 84 | GO:0090351: seedling development | 5.80E-03 |
| 85 | GO:0009833: plant-type primary cell wall biogenesis | 6.25E-03 |
| 86 | GO:0009944: polarity specification of adaxial/abaxial axis | 6.71E-03 |
| 87 | GO:0006418: tRNA aminoacylation for protein translation | 7.19E-03 |
| 88 | GO:0061077: chaperone-mediated protein folding | 7.68E-03 |
| 89 | GO:0098542: defense response to other organism | 7.68E-03 |
| 90 | GO:0048443: stamen development | 9.21E-03 |
| 91 | GO:0010118: stomatal movement | 1.03E-02 |
| 92 | GO:0007623: circadian rhythm | 1.05E-02 |
| 93 | GO:0008360: regulation of cell shape | 1.09E-02 |
| 94 | GO:0006520: cellular amino acid metabolic process | 1.09E-02 |
| 95 | GO:0007018: microtubule-based movement | 1.14E-02 |
| 96 | GO:0007059: chromosome segregation | 1.14E-02 |
| 97 | GO:0009791: post-embryonic development | 1.20E-02 |
| 98 | GO:0019252: starch biosynthetic process | 1.20E-02 |
| 99 | GO:0008654: phospholipid biosynthetic process | 1.20E-02 |
| 100 | GO:0009416: response to light stimulus | 1.23E-02 |
| 101 | GO:0080156: mitochondrial mRNA modification | 1.26E-02 |
| 102 | GO:0035556: intracellular signal transduction | 1.31E-02 |
| 103 | GO:0007264: small GTPase mediated signal transduction | 1.32E-02 |
| 104 | GO:0010583: response to cyclopentenone | 1.32E-02 |
| 105 | GO:0016032: viral process | 1.32E-02 |
| 106 | GO:0010090: trichome morphogenesis | 1.38E-02 |
| 107 | GO:1901657: glycosyl compound metabolic process | 1.38E-02 |
| 108 | GO:0005975: carbohydrate metabolic process | 1.45E-02 |
| 109 | GO:0046686: response to cadmium ion | 1.51E-02 |
| 110 | GO:0051607: defense response to virus | 1.57E-02 |
| 111 | GO:0000910: cytokinesis | 1.57E-02 |
| 112 | GO:0009817: defense response to fungus, incompatible interaction | 1.97E-02 |
| 113 | GO:0048481: plant ovule development | 1.97E-02 |
| 114 | GO:0030244: cellulose biosynthetic process | 1.97E-02 |
| 115 | GO:0018298: protein-chromophore linkage | 1.97E-02 |
| 116 | GO:0080167: response to karrikin | 2.03E-02 |
| 117 | GO:0009832: plant-type cell wall biogenesis | 2.04E-02 |
| 118 | GO:0000160: phosphorelay signal transduction system | 2.04E-02 |
| 119 | GO:0009407: toxin catabolic process | 2.11E-02 |
| 120 | GO:0016051: carbohydrate biosynthetic process | 2.33E-02 |
| 121 | GO:0009637: response to blue light | 2.33E-02 |
| 122 | GO:0006629: lipid metabolic process | 2.99E-02 |
| 123 | GO:0009636: response to toxic substance | 3.04E-02 |
| 124 | GO:0000165: MAPK cascade | 3.20E-02 |
| 125 | GO:0008152: metabolic process | 3.30E-02 |
| 126 | GO:0055114: oxidation-reduction process | 3.52E-02 |
| 127 | GO:0006096: glycolytic process | 3.89E-02 |
| 128 | GO:0048316: seed development | 3.98E-02 |
| 129 | GO:0009624: response to nematode | 4.44E-02 |
| 130 | GO:0018105: peptidyl-serine phosphorylation | 4.53E-02 |
| 131 | GO:0006396: RNA processing | 4.53E-02 |
| 132 | GO:0009742: brassinosteroid mediated signaling pathway | 4.63E-02 |
| 133 | GO:0009735: response to cytokinin | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 2 | GO:0005363: maltose transmembrane transporter activity | 0.00E+00 |
| 3 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 4 | GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity | 0.00E+00 |
| 5 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 6 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 7 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 8 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 9 | GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity | 0.00E+00 |
| 10 | GO:1990055: phenylacetaldehyde synthase activity | 0.00E+00 |
| 11 | GO:0033819: lipoyl(octanoyl) transferase activity | 0.00E+00 |
| 12 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 13 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 14 | GO:0016719: carotene 7,8-desaturase activity | 0.00E+00 |
| 15 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 8.20E-07 |
| 16 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 7.24E-06 |
| 17 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 4.74E-05 |
| 18 | GO:0004033: aldo-keto reductase (NADP) activity | 8.26E-05 |
| 19 | GO:0003867: 4-aminobutyrate transaminase activity | 1.27E-04 |
| 20 | GO:0004325: ferrochelatase activity | 1.27E-04 |
| 21 | GO:0051996: squalene synthase activity | 1.27E-04 |
| 22 | GO:0010313: phytochrome binding | 1.27E-04 |
| 23 | GO:0004832: valine-tRNA ligase activity | 1.27E-04 |
| 24 | GO:0004837: tyrosine decarboxylase activity | 1.27E-04 |
| 25 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 2.14E-04 |
| 26 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.94E-04 |
| 27 | GO:0004512: inositol-3-phosphate synthase activity | 2.94E-04 |
| 28 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.94E-04 |
| 29 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 2.94E-04 |
| 30 | GO:0010291: carotene beta-ring hydroxylase activity | 2.94E-04 |
| 31 | GO:0017118: lipoyltransferase activity | 2.94E-04 |
| 32 | GO:0016415: octanoyltransferase activity | 2.94E-04 |
| 33 | GO:0004047: aminomethyltransferase activity | 2.94E-04 |
| 34 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.86E-04 |
| 35 | GO:0004781: sulfate adenylyltransferase (ATP) activity | 4.86E-04 |
| 36 | GO:0070402: NADPH binding | 4.86E-04 |
| 37 | GO:0048027: mRNA 5'-UTR binding | 6.95E-04 |
| 38 | GO:0016149: translation release factor activity, codon specific | 6.95E-04 |
| 39 | GO:0004550: nucleoside diphosphate kinase activity | 6.95E-04 |
| 40 | GO:0009882: blue light photoreceptor activity | 6.95E-04 |
| 41 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 6.95E-04 |
| 42 | GO:0008453: alanine-glyoxylate transaminase activity | 9.21E-04 |
| 43 | GO:0016987: sigma factor activity | 9.21E-04 |
| 44 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 9.21E-04 |
| 45 | GO:0001053: plastid sigma factor activity | 9.21E-04 |
| 46 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 9.21E-04 |
| 47 | GO:0008374: O-acyltransferase activity | 1.16E-03 |
| 48 | GO:0042578: phosphoric ester hydrolase activity | 1.43E-03 |
| 49 | GO:0080030: methyl indole-3-acetate esterase activity | 1.43E-03 |
| 50 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.71E-03 |
| 51 | GO:0043295: glutathione binding | 2.01E-03 |
| 52 | GO:0003843: 1,3-beta-D-glucan synthase activity | 2.65E-03 |
| 53 | GO:0003747: translation release factor activity | 3.00E-03 |
| 54 | GO:0044183: protein binding involved in protein folding | 4.12E-03 |
| 55 | GO:0008081: phosphoric diester hydrolase activity | 4.93E-03 |
| 56 | GO:0031072: heat shock protein binding | 4.93E-03 |
| 57 | GO:0000155: phosphorelay sensor kinase activity | 4.93E-03 |
| 58 | GO:0051082: unfolded protein binding | 6.09E-03 |
| 59 | GO:0003887: DNA-directed DNA polymerase activity | 6.25E-03 |
| 60 | GO:0004519: endonuclease activity | 6.58E-03 |
| 61 | GO:0005528: FK506 binding | 6.71E-03 |
| 62 | GO:0016760: cellulose synthase (UDP-forming) activity | 8.69E-03 |
| 63 | GO:0003756: protein disulfide isomerase activity | 9.21E-03 |
| 64 | GO:0004812: aminoacyl-tRNA ligase activity | 9.75E-03 |
| 65 | GO:0010181: FMN binding | 1.14E-02 |
| 66 | GO:0048038: quinone binding | 1.26E-02 |
| 67 | GO:0004518: nuclease activity | 1.32E-02 |
| 68 | GO:0003684: damaged DNA binding | 1.44E-02 |
| 69 | GO:0016759: cellulose synthase activity | 1.44E-02 |
| 70 | GO:0008483: transaminase activity | 1.50E-02 |
| 71 | GO:0016597: amino acid binding | 1.57E-02 |
| 72 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 1.77E-02 |
| 73 | GO:0102483: scopolin beta-glucosidase activity | 1.83E-02 |
| 74 | GO:0004683: calmodulin-dependent protein kinase activity | 1.83E-02 |
| 75 | GO:0019825: oxygen binding | 1.92E-02 |
| 76 | GO:0004222: metalloendopeptidase activity | 2.11E-02 |
| 77 | GO:0050897: cobalt ion binding | 2.19E-02 |
| 78 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.33E-02 |
| 79 | GO:0008422: beta-glucosidase activity | 2.48E-02 |
| 80 | GO:0050661: NADP binding | 2.56E-02 |
| 81 | GO:0005509: calcium ion binding | 2.70E-02 |
| 82 | GO:0004364: glutathione transferase activity | 2.72E-02 |
| 83 | GO:0005198: structural molecule activity | 3.04E-02 |
| 84 | GO:0005524: ATP binding | 3.05E-02 |
| 85 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.12E-02 |
| 86 | GO:0051287: NAD binding | 3.20E-02 |
| 87 | GO:0003824: catalytic activity | 3.34E-02 |
| 88 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.46E-02 |
| 89 | GO:0003777: microtubule motor activity | 3.72E-02 |
| 90 | GO:0016491: oxidoreductase activity | 4.18E-02 |
| 91 | GO:0022857: transmembrane transporter activity | 4.26E-02 |
| 92 | GO:0016746: transferase activity, transferring acyl groups | 4.53E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.40E-23 |
| 3 | GO:0009941: chloroplast envelope | 3.98E-08 |
| 4 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.97E-06 |
| 5 | GO:0009570: chloroplast stroma | 2.00E-06 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 4.11E-06 |
| 7 | GO:0005960: glycine cleavage complex | 7.24E-06 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 8.88E-06 |
| 9 | GO:0031969: chloroplast membrane | 8.55E-05 |
| 10 | GO:0030095: chloroplast photosystem II | 3.20E-04 |
| 11 | GO:0009509: chromoplast | 4.86E-04 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 4.91E-04 |
| 13 | GO:0009534: chloroplast thylakoid | 7.77E-04 |
| 14 | GO:0019898: extrinsic component of membrane | 9.96E-04 |
| 15 | GO:0055035: plastid thylakoid membrane | 1.16E-03 |
| 16 | GO:0010319: stromule | 1.35E-03 |
| 17 | GO:0000148: 1,3-beta-D-glucan synthase complex | 2.65E-03 |
| 18 | GO:0005819: spindle | 2.71E-03 |
| 19 | GO:0016324: apical plasma membrane | 3.73E-03 |
| 20 | GO:0005765: lysosomal membrane | 4.12E-03 |
| 21 | GO:0009508: plastid chromosome | 4.93E-03 |
| 22 | GO:0009706: chloroplast inner membrane | 6.09E-03 |
| 23 | GO:0005758: mitochondrial intermembrane space | 6.71E-03 |
| 24 | GO:0010287: plastoglobule | 7.22E-03 |
| 25 | GO:0005623: cell | 7.82E-03 |
| 26 | GO:0005759: mitochondrial matrix | 9.58E-03 |
| 27 | GO:0005871: kinesin complex | 9.75E-03 |
| 28 | GO:0009504: cell plate | 1.20E-02 |
| 29 | GO:0005694: chromosome | 1.32E-02 |
| 30 | GO:0009295: nucleoid | 1.50E-02 |
| 31 | GO:0048046: apoplast | 1.81E-02 |
| 32 | GO:0009707: chloroplast outer membrane | 1.97E-02 |
| 33 | GO:0031902: late endosome membrane | 2.64E-02 |
| 34 | GO:0031977: thylakoid lumen | 2.64E-02 |
| 35 | GO:0043231: intracellular membrane-bounded organelle | 3.30E-02 |
| 36 | GO:0005747: mitochondrial respiratory chain complex I | 3.98E-02 |