Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G45340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0098586: cellular response to virus0.00E+00
2GO:0090470: shoot organ boundary specification0.00E+00
3GO:0017009: protein-phycocyanobilin linkage0.00E+00
4GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
5GO:2001294: malonyl-CoA catabolic process0.00E+00
6GO:0009773: photosynthetic electron transport in photosystem I2.17E-09
7GO:1902326: positive regulation of chlorophyll biosynthetic process2.06E-06
8GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.73E-05
9GO:0010027: thylakoid membrane organization2.08E-05
10GO:0010021: amylopectin biosynthetic process3.17E-05
11GO:0015979: photosynthesis6.81E-05
12GO:0010304: PSII associated light-harvesting complex II catabolic process7.50E-05
13GO:0019252: starch biosynthetic process1.75E-04
14GO:0048564: photosystem I assembly1.76E-04
15GO:0009704: de-etiolation1.76E-04
16GO:0043953: protein transport by the Tat complex2.09E-04
17GO:0070509: calcium ion import2.09E-04
18GO:0007263: nitric oxide mediated signal transduction2.09E-04
19GO:0051775: response to redox state2.09E-04
20GO:0046900: tetrahydrofolylpolyglutamate metabolic process2.09E-04
21GO:0071277: cellular response to calcium ion2.09E-04
22GO:1904966: positive regulation of vitamin E biosynthetic process2.09E-04
23GO:1904964: positive regulation of phytol biosynthetic process2.09E-04
24GO:0080051: cutin transport2.09E-04
25GO:0065002: intracellular protein transmembrane transport2.09E-04
26GO:0009658: chloroplast organization2.27E-04
27GO:0006098: pentose-phosphate shunt2.65E-04
28GO:0010206: photosystem II repair2.65E-04
29GO:0010205: photoinhibition3.16E-04
30GO:0018298: protein-chromophore linkage4.53E-04
31GO:0046741: transport of virus in host, tissue to tissue4.66E-04
32GO:0080005: photosystem stoichiometry adjustment4.66E-04
33GO:0015908: fatty acid transport4.66E-04
34GO:0034755: iron ion transmembrane transport4.66E-04
35GO:0015786: UDP-glucose transport4.66E-04
36GO:0042939: tripeptide transport4.66E-04
37GO:1904143: positive regulation of carotenoid biosynthetic process4.66E-04
38GO:0006094: gluconeogenesis5.58E-04
39GO:0055114: oxidation-reduction process6.38E-04
40GO:0031022: nuclear migration along microfilament7.59E-04
41GO:0006954: inflammatory response7.59E-04
42GO:0006753: nucleoside phosphate metabolic process7.59E-04
43GO:0016050: vesicle organization7.59E-04
44GO:0015783: GDP-fucose transport7.59E-04
45GO:0010025: wax biosynthetic process7.82E-04
46GO:0009644: response to high light intensity9.27E-04
47GO:0071484: cellular response to light intensity1.08E-03
48GO:0006107: oxaloacetate metabolic process1.08E-03
49GO:0072334: UDP-galactose transmembrane transport1.08E-03
50GO:0043572: plastid fission1.08E-03
51GO:0046836: glycolipid transport1.08E-03
52GO:0010371: regulation of gibberellin biosynthetic process1.08E-03
53GO:0016226: iron-sulfur cluster assembly1.13E-03
54GO:0009765: photosynthesis, light harvesting1.44E-03
55GO:0006109: regulation of carbohydrate metabolic process1.44E-03
56GO:0015994: chlorophyll metabolic process1.44E-03
57GO:0006734: NADH metabolic process1.44E-03
58GO:0042938: dipeptide transport1.44E-03
59GO:0010222: stem vascular tissue pattern formation1.44E-03
60GO:0006096: glycolytic process1.50E-03
61GO:0042391: regulation of membrane potential1.56E-03
62GO:0006662: glycerol ether metabolic process1.68E-03
63GO:0009247: glycolipid biosynthetic process1.83E-03
64GO:0043097: pyrimidine nucleoside salvage1.83E-03
65GO:0010117: photoprotection1.83E-03
66GO:0006564: L-serine biosynthetic process1.83E-03
67GO:0009904: chloroplast accumulation movement1.83E-03
68GO:0042549: photosystem II stabilization2.26E-03
69GO:0006206: pyrimidine nucleobase metabolic process2.26E-03
70GO:0010190: cytochrome b6f complex assembly2.26E-03
71GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.26E-03
72GO:1901259: chloroplast rRNA processing2.71E-03
73GO:0009903: chloroplast avoidance movement2.71E-03
74GO:0009854: oxidative photosynthetic carbon pathway2.71E-03
75GO:0055085: transmembrane transport2.86E-03
76GO:0010196: nonphotochemical quenching3.20E-03
77GO:0015937: coenzyme A biosynthetic process3.20E-03
78GO:0009645: response to low light intensity stimulus3.20E-03
79GO:0005978: glycogen biosynthetic process3.71E-03
80GO:0009642: response to light intensity3.71E-03
81GO:0019375: galactolipid biosynthetic process3.71E-03
82GO:0071482: cellular response to light stimulus4.24E-03
83GO:0009821: alkaloid biosynthetic process4.80E-03
84GO:0034765: regulation of ion transmembrane transport4.80E-03
85GO:0090333: regulation of stomatal closure4.80E-03
86GO:0000373: Group II intron splicing4.80E-03
87GO:0034599: cellular response to oxidative stress5.13E-03
88GO:0005982: starch metabolic process5.38E-03
89GO:0000038: very long-chain fatty acid metabolic process6.62E-03
90GO:0008285: negative regulation of cell proliferation6.62E-03
91GO:0043085: positive regulation of catalytic activity6.62E-03
92GO:0006879: cellular iron ion homeostasis6.62E-03
93GO:0018119: peptidyl-cysteine S-nitrosylation6.62E-03
94GO:0009735: response to cytokinin6.65E-03
95GO:0005983: starch catabolic process7.28E-03
96GO:0010588: cotyledon vascular tissue pattern formation7.96E-03
97GO:0006807: nitrogen compound metabolic process7.96E-03
98GO:0010628: positive regulation of gene expression7.96E-03
99GO:0006108: malate metabolic process7.96E-03
100GO:0010143: cutin biosynthetic process8.66E-03
101GO:0006541: glutamine metabolic process8.66E-03
102GO:0010207: photosystem II assembly8.66E-03
103GO:0010020: chloroplast fission8.66E-03
104GO:0019253: reductive pentose-phosphate cycle8.66E-03
105GO:0080167: response to karrikin8.69E-03
106GO:0006857: oligopeptide transport9.14E-03
107GO:0009833: plant-type primary cell wall biogenesis1.01E-02
108GO:0009626: plant-type hypersensitive response1.08E-02
109GO:0009409: response to cold1.10E-02
110GO:0051302: regulation of cell division1.17E-02
111GO:0007017: microtubule-based process1.17E-02
112GO:0009768: photosynthesis, light harvesting in photosystem I1.17E-02
113GO:0010073: meristem maintenance1.17E-02
114GO:0006810: transport1.26E-02
115GO:0010227: floral organ abscission1.41E-02
116GO:0009058: biosynthetic process1.61E-02
117GO:0042631: cellular response to water deprivation1.68E-02
118GO:0042335: cuticle development1.68E-02
119GO:0009741: response to brassinosteroid1.77E-02
120GO:0006520: cellular amino acid metabolic process1.77E-02
121GO:0009646: response to absence of light1.86E-02
122GO:0048544: recognition of pollen1.86E-02
123GO:0007018: microtubule-based movement1.86E-02
124GO:0006814: sodium ion transport1.86E-02
125GO:0009791: post-embryonic development1.96E-02
126GO:0008654: phospholipid biosynthetic process1.96E-02
127GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.06E-02
128GO:0000302: response to reactive oxygen species2.06E-02
129GO:0007623: circadian rhythm2.11E-02
130GO:0016032: viral process2.15E-02
131GO:0032502: developmental process2.15E-02
132GO:0030163: protein catabolic process2.25E-02
133GO:0009567: double fertilization forming a zygote and endosperm2.36E-02
134GO:0007166: cell surface receptor signaling pathway2.42E-02
135GO:0071805: potassium ion transmembrane transport2.46E-02
136GO:0016126: sterol biosynthetic process2.67E-02
137GO:0001666: response to hypoxia2.67E-02
138GO:0042128: nitrate assimilation2.89E-02
139GO:0009416: response to light stimulus2.94E-02
140GO:0009611: response to wounding3.02E-02
141GO:0000160: phosphorelay signal transduction system3.34E-02
142GO:0009853: photorespiration3.82E-02
143GO:0006099: tricarboxylic acid cycle3.94E-02
144GO:0005975: carbohydrate metabolic process4.05E-02
145GO:0006508: proteolysis4.36E-02
146GO:0051707: response to other organism4.57E-02
147GO:0009640: photomorphogenesis4.57E-02
148GO:0045454: cell redox homeostasis4.83E-02
149GO:0006952: defense response4.87E-02
RankGO TermAdjusted P value
1GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
2GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
3GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
4GO:0008974: phosphoribulokinase activity0.00E+00
5GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
6GO:0008465: glycerate dehydrogenase activity0.00E+00
7GO:1990534: thermospermine oxidase activity0.00E+00
8GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
9GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
10GO:0051738: xanthophyll binding0.00E+00
11GO:0016168: chlorophyll binding2.33E-05
12GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.17E-05
13GO:0009011: starch synthase activity3.17E-05
14GO:0004222: metalloendopeptidase activity4.30E-05
15GO:0016491: oxidoreductase activity5.26E-05
16GO:0004176: ATP-dependent peptidase activity6.78E-05
17GO:0004332: fructose-bisphosphate aldolase activity7.50E-05
18GO:0022891: substrate-specific transmembrane transporter activity8.92E-05
19GO:0005242: inward rectifier potassium channel activity1.04E-04
20GO:0048038: quinone binding1.93E-04
21GO:0035671: enone reductase activity2.09E-04
22GO:0050308: sugar-phosphatase activity2.09E-04
23GO:0010945: CoA pyrophosphatase activity2.09E-04
24GO:0019203: carbohydrate phosphatase activity2.09E-04
25GO:0008242: omega peptidase activity2.09E-04
26GO:0008746: NAD(P)+ transhydrogenase activity2.09E-04
27GO:0015245: fatty acid transporter activity2.09E-04
28GO:0004328: formamidase activity2.09E-04
29GO:0005221: intracellular cyclic nucleotide activated cation channel activity2.09E-04
30GO:0009977: proton motive force dependent protein transmembrane transporter activity4.66E-04
31GO:0004617: phosphoglycerate dehydrogenase activity4.66E-04
32GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity4.66E-04
33GO:0033201: alpha-1,4-glucan synthase activity4.66E-04
34GO:0003844: 1,4-alpha-glucan branching enzyme activity4.66E-04
35GO:0008967: phosphoglycolate phosphatase activity4.66E-04
36GO:0034722: gamma-glutamyl-peptidase activity4.66E-04
37GO:0042937: tripeptide transporter activity4.66E-04
38GO:0047746: chlorophyllase activity4.66E-04
39GO:0043169: cation binding7.59E-04
40GO:0004373: glycogen (starch) synthase activity7.59E-04
41GO:0032947: protein complex scaffold7.59E-04
42GO:0005457: GDP-fucose transmembrane transporter activity7.59E-04
43GO:0051536: iron-sulfur cluster binding8.63E-04
44GO:0008508: bile acid:sodium symporter activity1.08E-03
45GO:0017089: glycolipid transporter activity1.08E-03
46GO:0035250: UDP-galactosyltransferase activity1.08E-03
47GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity1.08E-03
48GO:0005460: UDP-glucose transmembrane transporter activity1.08E-03
49GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.08E-03
50GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.08E-03
51GO:0042936: dipeptide transporter activity1.44E-03
52GO:0051861: glycolipid binding1.44E-03
53GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.44E-03
54GO:0004506: squalene monooxygenase activity1.44E-03
55GO:0043495: protein anchor1.44E-03
56GO:0047134: protein-disulfide reductase activity1.45E-03
57GO:0030551: cyclic nucleotide binding1.56E-03
58GO:0004791: thioredoxin-disulfide reductase activity1.81E-03
59GO:0005459: UDP-galactose transmembrane transporter activity1.83E-03
60GO:2001070: starch binding2.26E-03
61GO:0000210: NAD+ diphosphatase activity2.26E-03
62GO:0042578: phosphoric ester hydrolase activity2.26E-03
63GO:0016615: malate dehydrogenase activity2.26E-03
64GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.26E-03
65GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.35E-03
66GO:0008237: metallopeptidase activity2.66E-03
67GO:0004849: uridine kinase activity2.71E-03
68GO:0030060: L-malate dehydrogenase activity2.71E-03
69GO:0005261: cation channel activity2.71E-03
70GO:0019899: enzyme binding3.20E-03
71GO:0052747: sinapyl alcohol dehydrogenase activity3.71E-03
72GO:0004033: aldo-keto reductase (NADP) activity3.71E-03
73GO:0043022: ribosome binding3.71E-03
74GO:0008135: translation factor activity, RNA binding4.24E-03
75GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors4.80E-03
76GO:0008138: protein tyrosine/serine/threonine phosphatase activity4.80E-03
77GO:0042626: ATPase activity, coupled to transmembrane movement of substances5.14E-03
78GO:0005381: iron ion transmembrane transporter activity5.38E-03
79GO:0016844: strictosidine synthase activity5.38E-03
80GO:0008047: enzyme activator activity5.99E-03
81GO:0047372: acylglycerol lipase activity6.62E-03
82GO:0045551: cinnamyl-alcohol dehydrogenase activity7.28E-03
83GO:0051287: NAD binding7.66E-03
84GO:0005215: transporter activity7.72E-03
85GO:0005262: calcium channel activity7.96E-03
86GO:0004565: beta-galactosidase activity7.96E-03
87GO:0016787: hydrolase activity8.15E-03
88GO:0008266: poly(U) RNA binding8.66E-03
89GO:0008131: primary amine oxidase activity8.66E-03
90GO:0030552: cAMP binding9.37E-03
91GO:0030553: cGMP binding9.37E-03
92GO:0003777: microtubule motor activity9.46E-03
93GO:0031409: pigment binding1.01E-02
94GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.01E-02
95GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.01E-02
96GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.01E-02
97GO:0004857: enzyme inhibitor activity1.09E-02
98GO:0043424: protein histidine kinase binding1.17E-02
99GO:0005216: ion channel activity1.17E-02
100GO:0015035: protein disulfide oxidoreductase activity1.25E-02
101GO:0005249: voltage-gated potassium channel activity1.68E-02
102GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.97E-02
103GO:0015297: antiporter activity2.01E-02
104GO:0000156: phosphorelay response regulator activity2.25E-02
105GO:0016791: phosphatase activity2.36E-02
106GO:0008483: transaminase activity2.46E-02
107GO:0016887: ATPase activity2.48E-02
108GO:0016597: amino acid binding2.57E-02
109GO:0042802: identical protein binding2.68E-02
110GO:0008168: methyltransferase activity3.15E-02
111GO:0016788: hydrolase activity, acting on ester bonds3.33E-02
112GO:0015238: drug transmembrane transporter activity3.34E-02
113GO:0003746: translation elongation factor activity3.82E-02
114GO:0004672: protein kinase activity3.87E-02
115GO:0030246: carbohydrate binding4.23E-02
116GO:0005198: structural molecule activity4.97E-02
117GO:0015293: symporter activity4.97E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009575: chromoplast stroma0.00E+00
4GO:0009507: chloroplast2.76E-33
5GO:0009535: chloroplast thylakoid membrane5.68E-19
6GO:0009570: chloroplast stroma5.88E-14
7GO:0009941: chloroplast envelope1.98E-13
8GO:0009534: chloroplast thylakoid4.24E-13
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.77E-10
10GO:0009579: thylakoid1.58E-09
11GO:0016021: integral component of membrane2.75E-06
12GO:0031977: thylakoid lumen7.79E-05
13GO:0009523: photosystem II1.75E-04
14GO:0009501: amyloplast1.76E-04
15GO:0031361: integral component of thylakoid membrane2.09E-04
16GO:0009782: photosystem I antenna complex2.09E-04
17GO:0009706: chloroplast inner membrane2.80E-04
18GO:0048046: apoplast3.33E-04
19GO:0010287: plastoglobule3.69E-04
20GO:0009897: external side of plasma membrane7.59E-04
21GO:0033281: TAT protein transport complex7.59E-04
22GO:0042651: thylakoid membrane9.49E-04
23GO:0030286: dynein complex1.44E-03
24GO:0009517: PSII associated light-harvesting complex II1.44E-03
25GO:0009543: chloroplast thylakoid lumen2.52E-03
26GO:0010319: stromule2.66E-03
27GO:0009508: plastid chromosome7.96E-03
28GO:0030076: light-harvesting complex9.37E-03
29GO:0005875: microtubule associated complex1.01E-02
30GO:0009654: photosystem II oxygen evolving complex1.17E-02
31GO:0005623: cell1.57E-02
32GO:0005871: kinesin complex1.59E-02
33GO:0019898: extrinsic component of membrane1.96E-02
34GO:0016020: membrane1.99E-02
35GO:0009295: nucleoid2.46E-02
36GO:0005778: peroxisomal membrane2.46E-02
37GO:0030529: intracellular ribonucleoprotein complex2.67E-02
38GO:0009536: plastid2.98E-02
39GO:0009707: chloroplast outer membrane3.23E-02
40GO:0031969: chloroplast membrane4.04E-02
41GO:0005773: vacuole4.50E-02
42GO:0005886: plasma membrane4.72E-02
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Gene type



Gene DE type