co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G45240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042430: indole-containing compound metabolic process	0.00E+00
2	GO:0006337: nucleosome disassembly	0.00E+00
3	GO:0090069: regulation of ribosome biogenesis	0.00E+00
4	GO:0006364: rRNA processing	4.25E-07
5	GO:0010162: seed dormancy process	1.50E-05
6	GO:0000494: box C/D snoRNA 3'-end processing	2.41E-05
7	GO:2000232: regulation of rRNA processing	2.41E-05
8	GO:1990258: histone glutamine methylation	2.41E-05
9	GO:0009944: polarity specification of adaxial/abaxial axis	4.33E-05
10	GO:0000027: ribosomal large subunit assembly	4.33E-05
11	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.16E-05
12	GO:0009294: DNA mediated transformation	6.70E-05
13	GO:1902626: assembly of large subunit precursor of preribosome	1.09E-04
14	GO:0043044: ATP-dependent chromatin remodeling	1.09E-04
15	GO:0006515: misfolded or incompletely synthesized protein catabolic process	1.62E-04
16	GO:0009855: determination of bilateral symmetry	1.62E-04
17	GO:0042254: ribosome biogenesis	1.74E-04
18	GO:0010188: response to microbial phytotoxin	2.21E-04
19	GO:0042273: ribosomal large subunit biogenesis	2.21E-04
20	GO:0000956: nuclear-transcribed mRNA catabolic process	2.21E-04
21	GO:0031167: rRNA methylation	2.84E-04
22	GO:0016554: cytidine to uridine editing	3.51E-04
23	GO:0080186: developmental vegetative growth	4.92E-04
24	GO:0046686: response to cadmium ion	5.42E-04
25	GO:0001510: RNA methylation	6.45E-04
26	GO:0016569: covalent chromatin modification	6.95E-04
27	GO:0006412: translation	7.06E-04
28	GO:0006189: 'de novo' IMP biosynthetic process	7.25E-04
29	GO:0048467: gynoecium development	1.25E-03
30	GO:0046688: response to copper ion	1.35E-03
31	GO:0006338: chromatin remodeling	1.55E-03
32	GO:0006825: copper ion transport	1.65E-03
33	GO:0006334: nucleosome assembly	1.76E-03
34	GO:0007005: mitochondrion organization	1.87E-03
35	GO:0008033: tRNA processing	2.33E-03
36	GO:0006662: glycerol ether metabolic process	2.45E-03
37	GO:0010197: polar nucleus fusion	2.45E-03
38	GO:0009960: endosperm development	2.45E-03
39	GO:0006635: fatty acid beta-oxidation	2.82E-03
40	GO:0080156: mitochondrial mRNA modification	2.82E-03
41	GO:0034599: cellular response to oxidative stress	5.26E-03
42	GO:0000154: rRNA modification	6.59E-03
43	GO:0009553: embryo sac development	9.36E-03
44	GO:0000398: mRNA splicing, via spliceosome	1.06E-02
45	GO:0006413: translational initiation	1.34E-02
46	GO:0009451: RNA modification	1.43E-02
47	GO:0009617: response to bacterium	1.59E-02
48	GO:0007049: cell cycle	2.07E-02
49	GO:0044550: secondary metabolite biosynthetic process	2.37E-02
50	GO:0045454: cell redox homeostasis	2.54E-02
51	GO:0045892: negative regulation of transcription, DNA-templated	2.57E-02
52	GO:0006629: lipid metabolic process	2.95E-02
53	GO:0006281: DNA repair	2.95E-02
54	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.60E-02
55	GO:0009734: auxin-activated signaling pathway	3.76E-02
56	GO:0009651: response to salt stress	4.10E-02
57	GO:0009735: response to cytokinin	4.16E-02
58	GO:0006351: transcription, DNA-templated	4.26E-02
59	GO:0009555: pollen development	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0030515: snoRNA binding	1.16E-08
2	GO:1990259: histone-glutamine methyltransferase activity	2.41E-05
3	GO:0042134: rRNA primary transcript binding	2.41E-05
4	GO:0004638: phosphoribosylaminoimidazole carboxylase activity	2.41E-05
5	GO:0004407: histone deacetylase activity	4.33E-05
6	GO:0070361: mitochondrial light strand promoter anti-sense binding	6.16E-05
7	GO:0008649: rRNA methyltransferase activity	1.09E-04
8	GO:0016531: copper chaperone activity	1.09E-04
9	GO:0050897: cobalt ion binding	2.78E-04
10	GO:0003746: translation elongation factor activity	3.05E-04
11	GO:0003723: RNA binding	3.09E-04
12	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	3.51E-04
13	GO:0003735: structural constituent of ribosome	7.85E-04
14	GO:0001055: RNA polymerase II activity	8.07E-04
15	GO:0001054: RNA polymerase I activity	9.78E-04
16	GO:0001056: RNA polymerase III activity	1.07E-03
17	GO:0005528: FK506 binding	1.55E-03
18	GO:0004176: ATP-dependent peptidase activity	1.76E-03
19	GO:0047134: protein-disulfide reductase activity	2.21E-03
20	GO:0003713: transcription coactivator activity	2.45E-03
21	GO:0004791: thioredoxin-disulfide reductase activity	2.57E-03
22	GO:0005515: protein binding	2.96E-03
23	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.08E-03
24	GO:0008236: serine-type peptidase activity	4.20E-03
25	GO:0042393: histone binding	5.59E-03
26	GO:0000166: nucleotide binding	6.02E-03
27	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.76E-03
28	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	7.47E-03
29	GO:0016298: lipase activity	7.65E-03
30	GO:0051082: unfolded protein binding	9.56E-03
31	GO:0015035: protein disulfide oxidoreductase activity	9.75E-03
32	GO:0005525: GTP binding	9.90E-03
33	GO:0008026: ATP-dependent helicase activity	9.96E-03
34	GO:0004252: serine-type endopeptidase activity	1.20E-02
35	GO:0005524: ATP binding	1.20E-02
36	GO:0003743: translation initiation factor activity	1.57E-02
37	GO:0003682: chromatin binding	1.99E-02
38	GO:0004497: monooxygenase activity	2.23E-02
39	GO:0016787: hydrolase activity	2.62E-02
40	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.68E-02
41	GO:0003924: GTPase activity	2.95E-02
42	GO:0016887: ATPase activity	4.03E-02

Rank	GO Term	Adjusted P value
1	GO:0034457: Mpp10 complex	0.00E+00
2	GO:0005730: nucleolus	3.11E-16
3	GO:0032040: small-subunit processome	1.26E-07
4	GO:0031428: box C/D snoRNP complex	2.16E-06
5	GO:0015030: Cajal body	1.23E-05
6	GO:0070545: PeBoW complex	6.16E-05
7	GO:1990726: Lsm1-7-Pat1 complex	1.62E-04
8	GO:0022625: cytosolic large ribosomal subunit	2.44E-04
9	GO:0000228: nuclear chromosome	2.84E-04
10	GO:0005840: ribosome	2.92E-04
11	GO:0016363: nuclear matrix	4.20E-04
12	GO:0005688: U6 snRNP	5.68E-04
13	GO:0046540: U4/U6 x U5 tri-snRNP complex	6.45E-04
14	GO:0005736: DNA-directed RNA polymerase I complex	7.25E-04
15	GO:0005732: small nucleolar ribonucleoprotein complex	8.00E-04
16	GO:0005666: DNA-directed RNA polymerase III complex	8.07E-04
17	GO:0000418: DNA-directed RNA polymerase IV complex	8.92E-04
18	GO:0005852: eukaryotic translation initiation factor 3 complex	9.78E-04
19	GO:0005665: DNA-directed RNA polymerase II, core complex	1.07E-03
20	GO:0005759: mitochondrial matrix	1.13E-03
21	GO:0019013: viral nucleocapsid	1.16E-03
22	GO:0005758: mitochondrial intermembrane space	1.55E-03
23	GO:0005739: mitochondrion	1.94E-03
24	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.06E-03
25	GO:0005618: cell wall	2.21E-03
26	GO:0005681: spliceosomal complex	8.40E-03
27	GO:0005834: heterotrimeric G-protein complex	8.77E-03
28	GO:0005774: vacuolar membrane	9.02E-03
29	GO:0005654: nucleoplasm	1.10E-02
30	GO:0005829: cytosol	1.67E-02
31	GO:0022627: cytosolic small ribosomal subunit	1.71E-02
32	GO:0005783: endoplasmic reticulum	2.19E-02
33	GO:0022626: cytosolic ribosome	4.30E-02
34	GO:0009506: plasmodesma	4.84E-02