GO Enrichment Analysis of Co-expressed Genes with
AT2G44860
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 2 | GO:0006337: nucleosome disassembly | 0.00E+00 |
| 3 | GO:0010162: seed dormancy process | 6.33E-06 |
| 4 | GO:0006364: rRNA processing | 7.19E-06 |
| 5 | GO:0006626: protein targeting to mitochondrion | 1.08E-05 |
| 6 | GO:0000494: box C/D snoRNA 3'-end processing | 1.39E-05 |
| 7 | GO:1990258: histone glutamine methylation | 1.39E-05 |
| 8 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.91E-05 |
| 9 | GO:0000027: ribosomal large subunit assembly | 1.91E-05 |
| 10 | GO:0009294: DNA mediated transformation | 3.02E-05 |
| 11 | GO:1902626: assembly of large subunit precursor of preribosome | 6.55E-05 |
| 12 | GO:0043044: ATP-dependent chromatin remodeling | 6.55E-05 |
| 13 | GO:0045039: protein import into mitochondrial inner membrane | 6.55E-05 |
| 14 | GO:0031365: N-terminal protein amino acid modification | 1.78E-04 |
| 15 | GO:0031167: rRNA methylation | 1.78E-04 |
| 16 | GO:0009423: chorismate biosynthetic process | 2.68E-04 |
| 17 | GO:0016569: covalent chromatin modification | 3.59E-04 |
| 18 | GO:0001510: RNA methylation | 4.16E-04 |
| 19 | GO:0016573: histone acetylation | 5.23E-04 |
| 20 | GO:0009073: aromatic amino acid family biosynthetic process | 6.34E-04 |
| 21 | GO:0016485: protein processing | 6.34E-04 |
| 22 | GO:0048467: gynoecium development | 8.13E-04 |
| 23 | GO:0046688: response to copper ion | 8.75E-04 |
| 24 | GO:0042254: ribosome biogenesis | 9.96E-04 |
| 25 | GO:0006338: chromatin remodeling | 1.00E-03 |
| 26 | GO:0006825: copper ion transport | 1.07E-03 |
| 27 | GO:0006334: nucleosome assembly | 1.13E-03 |
| 28 | GO:0007005: mitochondrion organization | 1.20E-03 |
| 29 | GO:0008033: tRNA processing | 1.49E-03 |
| 30 | GO:0006357: regulation of transcription from RNA polymerase II promoter | 2.30E-03 |
| 31 | GO:0000154: rRNA modification | 4.15E-03 |
| 32 | GO:0006412: translation | 6.29E-03 |
| 33 | GO:0006413: translational initiation | 8.32E-03 |
| 34 | GO:0046686: response to cadmium ion | 9.59E-03 |
| 35 | GO:0009617: response to bacterium | 9.90E-03 |
| 36 | GO:0007049: cell cycle | 1.28E-02 |
| 37 | GO:0006351: transcription, DNA-templated | 1.28E-02 |
| 38 | GO:0009793: embryo development ending in seed dormancy | 1.43E-02 |
| 39 | GO:0045892: negative regulation of transcription, DNA-templated | 1.59E-02 |
| 40 | GO:0006281: DNA repair | 1.82E-02 |
| 41 | GO:0009734: auxin-activated signaling pathway | 2.33E-02 |
| 42 | GO:0006414: translational elongation | 3.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004107: chorismate synthase activity | 0.00E+00 |
| 2 | GO:0030515: snoRNA binding | 3.27E-09 |
| 3 | GO:1990259: histone-glutamine methyltransferase activity | 1.39E-05 |
| 4 | GO:0042134: rRNA primary transcript binding | 1.39E-05 |
| 5 | GO:0004407: histone deacetylase activity | 1.91E-05 |
| 6 | GO:0008649: rRNA methyltransferase activity | 6.55E-05 |
| 7 | GO:0016531: copper chaperone activity | 6.55E-05 |
| 8 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.16E-04 |
| 9 | GO:0008235: metalloexopeptidase activity | 3.15E-04 |
| 10 | GO:0001055: RNA polymerase II activity | 5.23E-04 |
| 11 | GO:0001054: RNA polymerase I activity | 6.34E-04 |
| 12 | GO:0004177: aminopeptidase activity | 6.34E-04 |
| 13 | GO:0001056: RNA polymerase III activity | 6.93E-04 |
| 14 | GO:0005528: FK506 binding | 1.00E-03 |
| 15 | GO:0010181: FMN binding | 1.64E-03 |
| 16 | GO:0003735: structural constituent of ribosome | 1.86E-03 |
| 17 | GO:0003723: RNA binding | 2.12E-03 |
| 18 | GO:0050897: cobalt ion binding | 3.03E-03 |
| 19 | GO:0003746: translation elongation factor activity | 3.22E-03 |
| 20 | GO:0042393: histone binding | 3.52E-03 |
| 21 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.26E-03 |
| 22 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.69E-03 |
| 23 | GO:0008565: protein transporter activity | 7.91E-03 |
| 24 | GO:0003743: translation initiation factor activity | 9.75E-03 |
| 25 | GO:0003682: chromatin binding | 1.24E-02 |
| 26 | GO:0003924: GTPase activity | 1.82E-02 |
| 27 | GO:0003676: nucleic acid binding | 2.55E-02 |
| 28 | GO:0000166: nucleotide binding | 2.74E-02 |
| 29 | GO:0005507: copper ion binding | 3.53E-02 |
| 30 | GO:0005525: GTP binding | 3.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 3 | GO:0005730: nucleolus | 1.10E-16 |
| 4 | GO:0032040: small-subunit processome | 3.57E-08 |
| 5 | GO:0005758: mitochondrial intermembrane space | 1.07E-07 |
| 6 | GO:0031428: box C/D snoRNP complex | 8.71E-07 |
| 7 | GO:0015030: Cajal body | 5.15E-06 |
| 8 | GO:0035267: NuA4 histone acetyltransferase complex | 3.65E-05 |
| 9 | GO:0000228: nuclear chromosome | 1.78E-04 |
| 10 | GO:0016363: nuclear matrix | 2.68E-04 |
| 11 | GO:0005736: DNA-directed RNA polymerase I complex | 4.68E-04 |
| 12 | GO:0005666: DNA-directed RNA polymerase III complex | 5.23E-04 |
| 13 | GO:0000418: DNA-directed RNA polymerase IV complex | 5.78E-04 |
| 14 | GO:0005852: eukaryotic translation initiation factor 3 complex | 6.34E-04 |
| 15 | GO:0005665: DNA-directed RNA polymerase II, core complex | 6.93E-04 |
| 16 | GO:0019013: viral nucleocapsid | 7.52E-04 |
| 17 | GO:0005840: ribosome | 8.44E-04 |
| 18 | GO:0005829: cytosol | 1.13E-03 |
| 19 | GO:0005743: mitochondrial inner membrane | 1.63E-03 |
| 20 | GO:0016592: mediator complex | 1.88E-03 |
| 21 | GO:0005618: cell wall | 4.45E-03 |
| 22 | GO:0005732: small nucleolar ribonucleoprotein complex | 6.35E-03 |
| 23 | GO:0005759: mitochondrial matrix | 8.19E-03 |
| 24 | GO:0022627: cytosolic small ribosomal subunit | 1.06E-02 |
| 25 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.27E-02 |
| 26 | GO:0022625: cytosolic large ribosomal subunit | 1.43E-02 |
| 27 | GO:0005634: nucleus | 4.80E-02 |