GO Enrichment Analysis of Co-expressed Genes with
AT2G44640
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006223: uracil salvage | 0.00E+00 |
| 2 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 3 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 4 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0032544: plastid translation | 2.83E-07 |
| 6 | GO:0032502: developmental process | 1.97E-05 |
| 7 | GO:0042255: ribosome assembly | 2.95E-05 |
| 8 | GO:0006353: DNA-templated transcription, termination | 2.95E-05 |
| 9 | GO:0006633: fatty acid biosynthetic process | 3.75E-05 |
| 10 | GO:1904966: positive regulation of vitamin E biosynthetic process | 6.58E-05 |
| 11 | GO:1904964: positive regulation of phytol biosynthetic process | 6.58E-05 |
| 12 | GO:0060627: regulation of vesicle-mediated transport | 6.58E-05 |
| 13 | GO:0006412: translation | 1.25E-04 |
| 14 | GO:0008616: queuosine biosynthetic process | 1.59E-04 |
| 15 | GO:0006729: tetrahydrobiopterin biosynthetic process | 1.59E-04 |
| 16 | GO:0010086: embryonic root morphogenesis | 1.59E-04 |
| 17 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.59E-04 |
| 18 | GO:0009116: nucleoside metabolic process | 1.81E-04 |
| 19 | GO:0009062: fatty acid catabolic process | 2.69E-04 |
| 20 | GO:0006424: glutamyl-tRNA aminoacylation | 3.90E-04 |
| 21 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 3.90E-04 |
| 22 | GO:0007231: osmosensory signaling pathway | 3.90E-04 |
| 23 | GO:0006241: CTP biosynthetic process | 3.90E-04 |
| 24 | GO:0071329: cellular response to sucrose stimulus | 3.90E-04 |
| 25 | GO:0006165: nucleoside diphosphate phosphorylation | 3.90E-04 |
| 26 | GO:0006228: UTP biosynthetic process | 3.90E-04 |
| 27 | GO:0033500: carbohydrate homeostasis | 5.20E-04 |
| 28 | GO:0009956: radial pattern formation | 5.20E-04 |
| 29 | GO:0006183: GTP biosynthetic process | 5.20E-04 |
| 30 | GO:0044206: UMP salvage | 5.20E-04 |
| 31 | GO:0032543: mitochondrial translation | 6.60E-04 |
| 32 | GO:0010236: plastoquinone biosynthetic process | 6.60E-04 |
| 33 | GO:0043097: pyrimidine nucleoside salvage | 6.60E-04 |
| 34 | GO:0048831: regulation of shoot system development | 8.06E-04 |
| 35 | GO:0010190: cytochrome b6f complex assembly | 8.06E-04 |
| 36 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 8.06E-04 |
| 37 | GO:0006206: pyrimidine nucleobase metabolic process | 8.06E-04 |
| 38 | GO:0009658: chloroplast organization | 9.04E-04 |
| 39 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 9.59E-04 |
| 40 | GO:0006694: steroid biosynthetic process | 9.59E-04 |
| 41 | GO:0048509: regulation of meristem development | 9.59E-04 |
| 42 | GO:0030488: tRNA methylation | 9.59E-04 |
| 43 | GO:0010189: vitamin E biosynthetic process | 9.59E-04 |
| 44 | GO:0009955: adaxial/abaxial pattern specification | 9.59E-04 |
| 45 | GO:1901259: chloroplast rRNA processing | 9.59E-04 |
| 46 | GO:0006400: tRNA modification | 1.12E-03 |
| 47 | GO:0008272: sulfate transport | 1.12E-03 |
| 48 | GO:0006839: mitochondrial transport | 1.19E-03 |
| 49 | GO:0045010: actin nucleation | 1.29E-03 |
| 50 | GO:0006526: arginine biosynthetic process | 1.47E-03 |
| 51 | GO:0009808: lignin metabolic process | 1.47E-03 |
| 52 | GO:0009657: plastid organization | 1.47E-03 |
| 53 | GO:0009073: aromatic amino acid family biosynthetic process | 2.26E-03 |
| 54 | GO:0010015: root morphogenesis | 2.26E-03 |
| 55 | GO:0030036: actin cytoskeleton organization | 2.70E-03 |
| 56 | GO:0010207: photosystem II assembly | 2.93E-03 |
| 57 | GO:0009933: meristem structural organization | 2.93E-03 |
| 58 | GO:0007010: cytoskeleton organization | 3.65E-03 |
| 59 | GO:0006418: tRNA aminoacylation for protein translation | 3.90E-03 |
| 60 | GO:0016036: cellular response to phosphate starvation | 4.05E-03 |
| 61 | GO:0009411: response to UV | 4.70E-03 |
| 62 | GO:0008380: RNA splicing | 5.17E-03 |
| 63 | GO:0008033: tRNA processing | 5.55E-03 |
| 64 | GO:0042335: cuticle development | 5.55E-03 |
| 65 | GO:0006520: cellular amino acid metabolic process | 5.85E-03 |
| 66 | GO:0010305: leaf vascular tissue pattern formation | 5.85E-03 |
| 67 | GO:0007018: microtubule-based movement | 6.15E-03 |
| 68 | GO:0006635: fatty acid beta-oxidation | 6.76E-03 |
| 69 | GO:0016132: brassinosteroid biosynthetic process | 6.76E-03 |
| 70 | GO:0042254: ribosome biogenesis | 6.82E-03 |
| 71 | GO:0010090: trichome morphogenesis | 7.40E-03 |
| 72 | GO:0010029: regulation of seed germination | 9.08E-03 |
| 73 | GO:0015995: chlorophyll biosynthetic process | 9.79E-03 |
| 74 | GO:0048481: plant ovule development | 1.05E-02 |
| 75 | GO:0018298: protein-chromophore linkage | 1.05E-02 |
| 76 | GO:0009817: defense response to fungus, incompatible interaction | 1.05E-02 |
| 77 | GO:0000160: phosphorelay signal transduction system | 1.09E-02 |
| 78 | GO:0009834: plant-type secondary cell wall biogenesis | 1.13E-02 |
| 79 | GO:0007568: aging | 1.17E-02 |
| 80 | GO:0008152: metabolic process | 1.35E-02 |
| 81 | GO:0042542: response to hydrogen peroxide | 1.45E-02 |
| 82 | GO:0051707: response to other organism | 1.49E-02 |
| 83 | GO:0046686: response to cadmium ion | 1.70E-02 |
| 84 | GO:0042538: hyperosmotic salinity response | 1.75E-02 |
| 85 | GO:0009736: cytokinin-activated signaling pathway | 1.84E-02 |
| 86 | GO:0009585: red, far-red light phototransduction | 1.84E-02 |
| 87 | GO:0006096: glycolytic process | 2.07E-02 |
| 88 | GO:0009742: brassinosteroid mediated signaling pathway | 2.46E-02 |
| 89 | GO:0055085: transmembrane transport | 2.77E-02 |
| 90 | GO:0009790: embryo development | 3.09E-02 |
| 91 | GO:0007166: cell surface receptor signaling pathway | 3.83E-02 |
| 92 | GO:0006508: proteolysis | 3.96E-02 |
| 93 | GO:0071555: cell wall organization | 4.41E-02 |
| 94 | GO:0009826: unidimensional cell growth | 4.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 2 | GO:0009885: transmembrane histidine kinase cytokinin receptor activity | 0.00E+00 |
| 3 | GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity | 0.00E+00 |
| 4 | GO:0050614: delta24-sterol reductase activity | 0.00E+00 |
| 5 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 6 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 7 | GO:0016631: enoyl-[acyl-carrier-protein] reductase activity | 0.00E+00 |
| 8 | GO:0019955: cytokine binding | 0.00E+00 |
| 9 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 10 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 11 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 12 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 13 | GO:0019843: rRNA binding | 2.09E-15 |
| 14 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 2.47E-07 |
| 15 | GO:0019899: enzyme binding | 2.24E-05 |
| 16 | GO:0003735: structural constituent of ribosome | 4.74E-05 |
| 17 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 6.58E-05 |
| 18 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 6.58E-05 |
| 19 | GO:0008809: carnitine racemase activity | 6.58E-05 |
| 20 | GO:0004560: alpha-L-fucosidase activity | 6.58E-05 |
| 21 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 6.58E-05 |
| 22 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 6.58E-05 |
| 23 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 1.59E-04 |
| 24 | GO:0008479: queuine tRNA-ribosyltransferase activity | 1.59E-04 |
| 25 | GO:0009884: cytokinin receptor activity | 1.59E-04 |
| 26 | GO:0004176: ATP-dependent peptidase activity | 2.23E-04 |
| 27 | GO:0030267: glyoxylate reductase (NADP) activity | 2.69E-04 |
| 28 | GO:0005034: osmosensor activity | 2.69E-04 |
| 29 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 2.69E-04 |
| 30 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 2.69E-04 |
| 31 | GO:0002161: aminoacyl-tRNA editing activity | 2.69E-04 |
| 32 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.69E-04 |
| 33 | GO:0003727: single-stranded RNA binding | 2.92E-04 |
| 34 | GO:0004550: nucleoside diphosphate kinase activity | 3.90E-04 |
| 35 | GO:0004165: dodecenoyl-CoA delta-isomerase activity | 3.90E-04 |
| 36 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 3.90E-04 |
| 37 | GO:0004845: uracil phosphoribosyltransferase activity | 5.20E-04 |
| 38 | GO:0016836: hydro-lyase activity | 5.20E-04 |
| 39 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 5.20E-04 |
| 40 | GO:0043495: protein anchor | 5.20E-04 |
| 41 | GO:0008237: metallopeptidase activity | 5.82E-04 |
| 42 | GO:0004017: adenylate kinase activity | 9.59E-04 |
| 43 | GO:0004849: uridine kinase activity | 9.59E-04 |
| 44 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 9.59E-04 |
| 45 | GO:0004033: aldo-keto reductase (NADP) activity | 1.29E-03 |
| 46 | GO:0003690: double-stranded DNA binding | 1.85E-03 |
| 47 | GO:0003777: microtubule motor activity | 1.98E-03 |
| 48 | GO:0004673: protein histidine kinase activity | 2.05E-03 |
| 49 | GO:0000049: tRNA binding | 2.48E-03 |
| 50 | GO:0000155: phosphorelay sensor kinase activity | 2.70E-03 |
| 51 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 2.93E-03 |
| 52 | GO:0008266: poly(U) RNA binding | 2.93E-03 |
| 53 | GO:0051536: iron-sulfur cluster binding | 3.65E-03 |
| 54 | GO:0043424: protein histidine kinase binding | 3.90E-03 |
| 55 | GO:0008017: microtubule binding | 4.54E-03 |
| 56 | GO:0022891: substrate-specific transmembrane transporter activity | 4.70E-03 |
| 57 | GO:0004812: aminoacyl-tRNA ligase activity | 5.26E-03 |
| 58 | GO:0005507: copper ion binding | 6.18E-03 |
| 59 | GO:0019901: protein kinase binding | 6.45E-03 |
| 60 | GO:0016168: chlorophyll binding | 9.08E-03 |
| 61 | GO:0052689: carboxylic ester hydrolase activity | 9.17E-03 |
| 62 | GO:0004721: phosphoprotein phosphatase activity | 9.79E-03 |
| 63 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.02E-02 |
| 64 | GO:0030145: manganese ion binding | 1.17E-02 |
| 65 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.17E-02 |
| 66 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.36E-02 |
| 67 | GO:0005198: structural molecule activity | 1.62E-02 |
| 68 | GO:0051287: NAD binding | 1.70E-02 |
| 69 | GO:0016887: ATPase activity | 1.91E-02 |
| 70 | GO:0045735: nutrient reservoir activity | 2.07E-02 |
| 71 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 2.21E-02 |
| 72 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 2.21E-02 |
| 73 | GO:0016740: transferase activity | 2.67E-02 |
| 74 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.32E-02 |
| 75 | GO:0005525: GTP binding | 3.59E-02 |
| 76 | GO:0008194: UDP-glycosyltransferase activity | 3.78E-02 |
| 77 | GO:0042802: identical protein binding | 4.13E-02 |
| 78 | GO:0008168: methyltransferase activity | 4.63E-02 |
| 79 | GO:0000287: magnesium ion binding | 4.69E-02 |
| 80 | GO:0004601: peroxidase activity | 4.75E-02 |
| 81 | GO:0016788: hydrolase activity, acting on ester bonds | 4.82E-02 |
| 82 | GO:0003824: catalytic activity | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005835: fatty acid synthase complex | 0.00E+00 |
| 2 | GO:0009570: chloroplast stroma | 3.18E-18 |
| 3 | GO:0009941: chloroplast envelope | 6.29E-17 |
| 4 | GO:0009507: chloroplast | 2.16E-16 |
| 5 | GO:0005840: ribosome | 6.73E-06 |
| 6 | GO:0009547: plastid ribosome | 6.58E-05 |
| 7 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 6.58E-05 |
| 8 | GO:0000311: plastid large ribosomal subunit | 9.59E-05 |
| 9 | GO:0000312: plastid small ribosomal subunit | 1.27E-04 |
| 10 | GO:0009579: thylakoid | 1.42E-04 |
| 11 | GO:0009534: chloroplast thylakoid | 1.45E-04 |
| 12 | GO:0042651: thylakoid membrane | 2.02E-04 |
| 13 | GO:0009535: chloroplast thylakoid membrane | 3.71E-04 |
| 14 | GO:0009536: plastid | 5.67E-04 |
| 15 | GO:0031209: SCAR complex | 8.06E-04 |
| 16 | GO:0005763: mitochondrial small ribosomal subunit | 1.65E-03 |
| 17 | GO:0045298: tubulin complex | 1.65E-03 |
| 18 | GO:0009508: plastid chromosome | 2.70E-03 |
| 19 | GO:0022626: cytosolic ribosome | 3.73E-03 |
| 20 | GO:0015935: small ribosomal subunit | 4.17E-03 |
| 21 | GO:0005618: cell wall | 4.40E-03 |
| 22 | GO:0005871: kinesin complex | 5.26E-03 |
| 23 | GO:0046658: anchored component of plasma membrane | 5.73E-03 |
| 24 | GO:0022627: cytosolic small ribosomal subunit | 5.73E-03 |
| 25 | GO:0009523: photosystem II | 6.45E-03 |
| 26 | GO:0031225: anchored component of membrane | 6.94E-03 |
| 27 | GO:0005874: microtubule | 8.02E-03 |
| 28 | GO:0009295: nucleoid | 8.06E-03 |
| 29 | GO:0005743: mitochondrial inner membrane | 1.14E-02 |
| 30 | GO:0009505: plant-type cell wall | 1.29E-02 |
| 31 | GO:0009706: chloroplast inner membrane | 2.36E-02 |
| 32 | GO:0016020: membrane | 3.37E-02 |
| 33 | GO:0005802: trans-Golgi network | 3.50E-02 |
| 34 | GO:0005768: endosome | 3.97E-02 |
| 35 | GO:0005774: vacuolar membrane | 4.58E-02 |