GO Enrichment Analysis of Co-expressed Genes with
AT2G43750
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070455: positive regulation of heme biosynthetic process | 0.00E+00 |
| 2 | GO:1900000: regulation of anthocyanin catabolic process | 0.00E+00 |
| 3 | GO:0035674: tricarboxylic acid transmembrane transport | 0.00E+00 |
| 4 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 5 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 6 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 7 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 8 | GO:0042425: choline biosynthetic process | 0.00E+00 |
| 9 | GO:0006412: translation | 5.70E-12 |
| 10 | GO:0090391: granum assembly | 1.77E-08 |
| 11 | GO:0015995: chlorophyll biosynthetic process | 6.48E-08 |
| 12 | GO:0032544: plastid translation | 7.32E-08 |
| 13 | GO:0015979: photosynthesis | 1.00E-07 |
| 14 | GO:0042254: ribosome biogenesis | 3.88E-07 |
| 15 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.12E-06 |
| 16 | GO:0010027: thylakoid membrane organization | 1.35E-06 |
| 17 | GO:0010206: photosystem II repair | 9.75E-06 |
| 18 | GO:0016024: CDP-diacylglycerol biosynthetic process | 2.81E-05 |
| 19 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.26E-04 |
| 20 | GO:0009735: response to cytokinin | 1.28E-04 |
| 21 | GO:1901259: chloroplast rRNA processing | 1.34E-04 |
| 22 | GO:0010196: nonphotochemical quenching | 1.77E-04 |
| 23 | GO:0009772: photosynthetic electron transport in photosystem II | 1.77E-04 |
| 24 | GO:0008610: lipid biosynthetic process | 2.25E-04 |
| 25 | GO:0042371: vitamin K biosynthetic process | 2.46E-04 |
| 26 | GO:0043686: co-translational protein modification | 2.46E-04 |
| 27 | GO:0034337: RNA folding | 2.46E-04 |
| 28 | GO:0006835: dicarboxylic acid transport | 2.46E-04 |
| 29 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.46E-04 |
| 30 | GO:0042759: long-chain fatty acid biosynthetic process | 2.46E-04 |
| 31 | GO:0009828: plant-type cell wall loosening | 3.44E-04 |
| 32 | GO:0009773: photosynthetic electron transport in photosystem I | 5.39E-04 |
| 33 | GO:0006729: tetrahydrobiopterin biosynthetic process | 5.44E-04 |
| 34 | GO:0010289: homogalacturonan biosynthetic process | 5.44E-04 |
| 35 | GO:0006568: tryptophan metabolic process | 5.44E-04 |
| 36 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 5.44E-04 |
| 37 | GO:0010541: acropetal auxin transport | 5.44E-04 |
| 38 | GO:0010207: photosystem II assembly | 7.88E-04 |
| 39 | GO:0010581: regulation of starch biosynthetic process | 8.83E-04 |
| 40 | GO:0010160: formation of animal organ boundary | 8.83E-04 |
| 41 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 8.83E-04 |
| 42 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 8.83E-04 |
| 43 | GO:0010025: wax biosynthetic process | 9.77E-04 |
| 44 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.26E-03 |
| 45 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.26E-03 |
| 46 | GO:0033014: tetrapyrrole biosynthetic process | 1.26E-03 |
| 47 | GO:0071484: cellular response to light intensity | 1.26E-03 |
| 48 | GO:0006166: purine ribonucleoside salvage | 1.26E-03 |
| 49 | GO:0009102: biotin biosynthetic process | 1.26E-03 |
| 50 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.26E-03 |
| 51 | GO:0010239: chloroplast mRNA processing | 1.26E-03 |
| 52 | GO:0006168: adenine salvage | 1.26E-03 |
| 53 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 1.26E-03 |
| 54 | GO:0006986: response to unfolded protein | 1.26E-03 |
| 55 | GO:0009664: plant-type cell wall organization | 1.49E-03 |
| 56 | GO:0006661: phosphatidylinositol biosynthetic process | 1.68E-03 |
| 57 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 1.68E-03 |
| 58 | GO:0048443: stamen development | 1.68E-03 |
| 59 | GO:0009826: unidimensional cell growth | 1.72E-03 |
| 60 | GO:0009658: chloroplast organization | 1.82E-03 |
| 61 | GO:0000413: protein peptidyl-prolyl isomerization | 1.97E-03 |
| 62 | GO:0031365: N-terminal protein amino acid modification | 2.15E-03 |
| 63 | GO:0006656: phosphatidylcholine biosynthetic process | 2.15E-03 |
| 64 | GO:0044209: AMP salvage | 2.15E-03 |
| 65 | GO:0010236: plastoquinone biosynthetic process | 2.15E-03 |
| 66 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.15E-03 |
| 67 | GO:0000302: response to reactive oxygen species | 2.61E-03 |
| 68 | GO:0006751: glutathione catabolic process | 2.65E-03 |
| 69 | GO:0035435: phosphate ion transmembrane transport | 2.65E-03 |
| 70 | GO:0060918: auxin transport | 2.65E-03 |
| 71 | GO:0010019: chloroplast-nucleus signaling pathway | 3.18E-03 |
| 72 | GO:0042372: phylloquinone biosynthetic process | 3.18E-03 |
| 73 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.18E-03 |
| 74 | GO:0017148: negative regulation of translation | 3.18E-03 |
| 75 | GO:0048528: post-embryonic root development | 3.75E-03 |
| 76 | GO:1900057: positive regulation of leaf senescence | 3.75E-03 |
| 77 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.75E-03 |
| 78 | GO:0042744: hydrogen peroxide catabolic process | 4.01E-03 |
| 79 | GO:0006353: DNA-templated transcription, termination | 4.35E-03 |
| 80 | GO:0048564: photosystem I assembly | 4.35E-03 |
| 81 | GO:0009690: cytokinin metabolic process | 4.35E-03 |
| 82 | GO:0006605: protein targeting | 4.35E-03 |
| 83 | GO:0006457: protein folding | 4.49E-03 |
| 84 | GO:0019430: removal of superoxide radicals | 4.98E-03 |
| 85 | GO:0006526: arginine biosynthetic process | 4.98E-03 |
| 86 | GO:0048589: developmental growth | 5.65E-03 |
| 87 | GO:0006783: heme biosynthetic process | 5.65E-03 |
| 88 | GO:0016051: carbohydrate biosynthetic process | 6.21E-03 |
| 89 | GO:0010380: regulation of chlorophyll biosynthetic process | 6.33E-03 |
| 90 | GO:0042761: very long-chain fatty acid biosynthetic process | 6.33E-03 |
| 91 | GO:0006779: porphyrin-containing compound biosynthetic process | 6.33E-03 |
| 92 | GO:0034599: cellular response to oxidative stress | 6.50E-03 |
| 93 | GO:0006782: protoporphyrinogen IX biosynthetic process | 7.06E-03 |
| 94 | GO:0045036: protein targeting to chloroplast | 7.06E-03 |
| 95 | GO:0006949: syncytium formation | 7.06E-03 |
| 96 | GO:0030001: metal ion transport | 7.08E-03 |
| 97 | GO:0009073: aromatic amino acid family biosynthetic process | 7.80E-03 |
| 98 | GO:0043085: positive regulation of catalytic activity | 7.80E-03 |
| 99 | GO:1903507: negative regulation of nucleic acid-templated transcription | 7.80E-03 |
| 100 | GO:0018119: peptidyl-cysteine S-nitrosylation | 7.80E-03 |
| 101 | GO:0010152: pollen maturation | 8.58E-03 |
| 102 | GO:0008361: regulation of cell size | 8.58E-03 |
| 103 | GO:0009718: anthocyanin-containing compound biosynthetic process | 9.38E-03 |
| 104 | GO:0009767: photosynthetic electron transport chain | 9.38E-03 |
| 105 | GO:0010540: basipetal auxin transport | 1.02E-02 |
| 106 | GO:0010143: cutin biosynthetic process | 1.02E-02 |
| 107 | GO:0006833: water transport | 1.20E-02 |
| 108 | GO:0000027: ribosomal large subunit assembly | 1.29E-02 |
| 109 | GO:0030245: cellulose catabolic process | 1.57E-02 |
| 110 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.57E-02 |
| 111 | GO:0071369: cellular response to ethylene stimulus | 1.67E-02 |
| 112 | GO:0009306: protein secretion | 1.77E-02 |
| 113 | GO:0032259: methylation | 1.82E-02 |
| 114 | GO:0016117: carotenoid biosynthetic process | 1.88E-02 |
| 115 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.88E-02 |
| 116 | GO:0042335: cuticle development | 1.99E-02 |
| 117 | GO:0042631: cellular response to water deprivation | 1.99E-02 |
| 118 | GO:0080022: primary root development | 1.99E-02 |
| 119 | GO:0034220: ion transmembrane transport | 1.99E-02 |
| 120 | GO:0009958: positive gravitropism | 2.09E-02 |
| 121 | GO:0006520: cellular amino acid metabolic process | 2.09E-02 |
| 122 | GO:0015986: ATP synthesis coupled proton transport | 2.21E-02 |
| 123 | GO:0009790: embryo development | 2.26E-02 |
| 124 | GO:0008654: phospholipid biosynthetic process | 2.32E-02 |
| 125 | GO:0009791: post-embryonic development | 2.32E-02 |
| 126 | GO:0010183: pollen tube guidance | 2.32E-02 |
| 127 | GO:0006633: fatty acid biosynthetic process | 2.43E-02 |
| 128 | GO:0030163: protein catabolic process | 2.67E-02 |
| 129 | GO:0009639: response to red or far red light | 2.79E-02 |
| 130 | GO:0051607: defense response to virus | 3.04E-02 |
| 131 | GO:0007166: cell surface receptor signaling pathway | 3.06E-02 |
| 132 | GO:0071555: cell wall organization | 3.12E-02 |
| 133 | GO:0016126: sterol biosynthetic process | 3.16E-02 |
| 134 | GO:0008380: RNA splicing | 3.19E-02 |
| 135 | GO:0009627: systemic acquired resistance | 3.42E-02 |
| 136 | GO:0009737: response to abscisic acid | 3.54E-02 |
| 137 | GO:0009817: defense response to fungus, incompatible interaction | 3.82E-02 |
| 138 | GO:0009793: embryo development ending in seed dormancy | 4.04E-02 |
| 139 | GO:0010218: response to far red light | 4.10E-02 |
| 140 | GO:0009631: cold acclimation | 4.24E-02 |
| 141 | GO:0048527: lateral root development | 4.24E-02 |
| 142 | GO:0009637: response to blue light | 4.52E-02 |
| 143 | GO:0006839: mitochondrial transport | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 2 | GO:0015142: tricarboxylic acid transmembrane transporter activity | 0.00E+00 |
| 3 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 4 | GO:0005048: signal sequence binding | 0.00E+00 |
| 5 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 6 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 7 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 8 | GO:0019843: rRNA binding | 1.38E-17 |
| 9 | GO:0003735: structural constituent of ribosome | 1.03E-10 |
| 10 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.53E-10 |
| 11 | GO:0005528: FK506 binding | 3.65E-08 |
| 12 | GO:0043023: ribosomal large subunit binding | 2.31E-05 |
| 13 | GO:0016851: magnesium chelatase activity | 2.31E-05 |
| 14 | GO:0004045: aminoacyl-tRNA hydrolase activity | 4.19E-05 |
| 15 | GO:0004130: cytochrome-c peroxidase activity | 9.77E-05 |
| 16 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 9.77E-05 |
| 17 | GO:0042586: peptide deformylase activity | 2.46E-04 |
| 18 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 2.46E-04 |
| 19 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 2.46E-04 |
| 20 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.46E-04 |
| 21 | GO:0080062: cytokinin 9-beta-glucosyltransferase activity | 2.46E-04 |
| 22 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.46E-04 |
| 23 | GO:0047807: cytokinin 7-beta-glucosyltransferase activity | 2.46E-04 |
| 24 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.46E-04 |
| 25 | GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity | 2.46E-04 |
| 26 | GO:0004163: diphosphomevalonate decarboxylase activity | 2.46E-04 |
| 27 | GO:0017169: CDP-alcohol phosphatidyltransferase activity | 2.46E-04 |
| 28 | GO:0003839: gamma-glutamylcyclotransferase activity | 5.44E-04 |
| 29 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 5.44E-04 |
| 30 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 5.44E-04 |
| 31 | GO:0004565: beta-galactosidase activity | 7.00E-04 |
| 32 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 8.83E-04 |
| 33 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 8.83E-04 |
| 34 | GO:0004751: ribose-5-phosphate isomerase activity | 8.83E-04 |
| 35 | GO:0005310: dicarboxylic acid transmembrane transporter activity | 8.83E-04 |
| 36 | GO:0051087: chaperone binding | 1.19E-03 |
| 37 | GO:0008097: 5S rRNA binding | 1.26E-03 |
| 38 | GO:0017077: oxidative phosphorylation uncoupler activity | 1.26E-03 |
| 39 | GO:0003999: adenine phosphoribosyltransferase activity | 1.26E-03 |
| 40 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.68E-03 |
| 41 | GO:0052793: pectin acetylesterase activity | 1.68E-03 |
| 42 | GO:0004659: prenyltransferase activity | 1.68E-03 |
| 43 | GO:0043495: protein anchor | 1.68E-03 |
| 44 | GO:0010011: auxin binding | 1.68E-03 |
| 45 | GO:0016836: hydro-lyase activity | 1.68E-03 |
| 46 | GO:0004040: amidase activity | 2.15E-03 |
| 47 | GO:0010181: FMN binding | 2.27E-03 |
| 48 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.65E-03 |
| 49 | GO:0016688: L-ascorbate peroxidase activity | 2.65E-03 |
| 50 | GO:0015631: tubulin binding | 3.18E-03 |
| 51 | GO:0004620: phospholipase activity | 3.75E-03 |
| 52 | GO:0004252: serine-type endopeptidase activity | 3.88E-03 |
| 53 | GO:0008312: 7S RNA binding | 4.35E-03 |
| 54 | GO:0008236: serine-type peptidase activity | 4.66E-03 |
| 55 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.90E-03 |
| 56 | GO:0016491: oxidoreductase activity | 5.01E-03 |
| 57 | GO:0005525: GTP binding | 6.82E-03 |
| 58 | GO:0042802: identical protein binding | 6.94E-03 |
| 59 | GO:0008047: enzyme activator activity | 7.06E-03 |
| 60 | GO:0015020: glucuronosyltransferase activity | 7.06E-03 |
| 61 | GO:0016788: hydrolase activity, acting on ester bonds | 9.14E-03 |
| 62 | GO:0010329: auxin efflux transmembrane transporter activity | 9.38E-03 |
| 63 | GO:0031072: heat shock protein binding | 9.38E-03 |
| 64 | GO:0009982: pseudouridine synthase activity | 9.38E-03 |
| 65 | GO:0015114: phosphate ion transmembrane transporter activity | 9.38E-03 |
| 66 | GO:0008266: poly(U) RNA binding | 1.02E-02 |
| 67 | GO:0003714: transcription corepressor activity | 1.29E-02 |
| 68 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.32E-02 |
| 69 | GO:0052689: carboxylic ester hydrolase activity | 1.33E-02 |
| 70 | GO:0043424: protein histidine kinase binding | 1.38E-02 |
| 71 | GO:0004707: MAP kinase activity | 1.47E-02 |
| 72 | GO:0051082: unfolded protein binding | 1.54E-02 |
| 73 | GO:0042803: protein homodimerization activity | 1.57E-02 |
| 74 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.57E-02 |
| 75 | GO:0016746: transferase activity, transferring acyl groups | 1.59E-02 |
| 76 | GO:0030570: pectate lyase activity | 1.67E-02 |
| 77 | GO:0008810: cellulase activity | 1.67E-02 |
| 78 | GO:0003756: protein disulfide isomerase activity | 1.77E-02 |
| 79 | GO:0005507: copper ion binding | 1.86E-02 |
| 80 | GO:0003924: GTPase activity | 1.92E-02 |
| 81 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 2.09E-02 |
| 82 | GO:0016829: lyase activity | 2.10E-02 |
| 83 | GO:0004791: thioredoxin-disulfide reductase activity | 2.21E-02 |
| 84 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 2.49E-02 |
| 85 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.67E-02 |
| 86 | GO:0005509: calcium ion binding | 2.77E-02 |
| 87 | GO:0016791: phosphatase activity | 2.79E-02 |
| 88 | GO:0008483: transaminase activity | 2.91E-02 |
| 89 | GO:0015250: water channel activity | 3.16E-02 |
| 90 | GO:0016168: chlorophyll binding | 3.29E-02 |
| 91 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 3.40E-02 |
| 92 | GO:0008375: acetylglucosaminyltransferase activity | 3.42E-02 |
| 93 | GO:0008168: methyltransferase activity | 3.98E-02 |
| 94 | GO:0030145: manganese ion binding | 4.24E-02 |
| 95 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043224: nuclear SCF ubiquitin ligase complex | 0.00E+00 |
| 2 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.28E-43 |
| 4 | GO:0009570: chloroplast stroma | 1.27E-42 |
| 5 | GO:0009941: chloroplast envelope | 8.34E-29 |
| 6 | GO:0009579: thylakoid | 9.22E-29 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 1.09E-22 |
| 8 | GO:0009534: chloroplast thylakoid | 1.87E-21 |
| 9 | GO:0009535: chloroplast thylakoid membrane | 4.03E-20 |
| 10 | GO:0031977: thylakoid lumen | 4.96E-17 |
| 11 | GO:0005840: ribosome | 7.33E-13 |
| 12 | GO:0030095: chloroplast photosystem II | 9.77E-07 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 2.65E-06 |
| 14 | GO:0010007: magnesium chelatase complex | 1.02E-05 |
| 15 | GO:0019898: extrinsic component of membrane | 1.34E-05 |
| 16 | GO:0009533: chloroplast stromal thylakoid | 1.77E-04 |
| 17 | GO:0009547: plastid ribosome | 2.46E-04 |
| 18 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.46E-04 |
| 19 | GO:0031969: chloroplast membrane | 5.26E-04 |
| 20 | GO:0030093: chloroplast photosystem I | 5.44E-04 |
| 21 | GO:0080085: signal recognition particle, chloroplast targeting | 5.44E-04 |
| 22 | GO:0000311: plastid large ribosomal subunit | 6.18E-04 |
| 23 | GO:0000312: plastid small ribosomal subunit | 7.88E-04 |
| 24 | GO:0005618: cell wall | 8.52E-04 |
| 25 | GO:0016020: membrane | 9.56E-04 |
| 26 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.65E-03 |
| 27 | GO:0030529: intracellular ribonucleoprotein complex | 3.76E-03 |
| 28 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 4.98E-03 |
| 29 | GO:0008180: COP9 signalosome | 5.65E-03 |
| 30 | GO:0055028: cortical microtubule | 7.06E-03 |
| 31 | GO:0032040: small-subunit processome | 8.58E-03 |
| 32 | GO:0009508: plastid chromosome | 9.38E-03 |
| 33 | GO:0043234: protein complex | 1.20E-02 |
| 34 | GO:0009505: plant-type cell wall | 1.45E-02 |
| 35 | GO:0015935: small ribosomal subunit | 1.47E-02 |
| 36 | GO:0009522: photosystem I | 2.21E-02 |
| 37 | GO:0009523: photosystem II | 2.32E-02 |
| 38 | GO:0005759: mitochondrial matrix | 2.43E-02 |
| 39 | GO:0009295: nucleoid | 2.91E-02 |
| 40 | GO:0010319: stromule | 2.91E-02 |
| 41 | GO:0022627: cytosolic small ribosomal subunit | 3.54E-02 |
| 42 | GO:0019005: SCF ubiquitin ligase complex | 3.82E-02 |
| 43 | GO:0009707: chloroplast outer membrane | 3.82E-02 |
| 44 | GO:0009536: plastid | 4.20E-02 |
| 45 | GO:0015934: large ribosomal subunit | 4.24E-02 |