co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G43560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0034337: RNA folding	0.00E+00
5	GO:2000505: regulation of energy homeostasis	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0045014: negative regulation of transcription by glucose	0.00E+00
8	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
9	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
10	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
11	GO:0061635: regulation of protein complex stability	0.00E+00
12	GO:0016553: base conversion or substitution editing	0.00E+00
13	GO:0090627: plant epidermal cell differentiation	0.00E+00
14	GO:0015979: photosynthesis	4.26E-14
15	GO:0006412: translation	3.78E-13
16	GO:0042254: ribosome biogenesis	3.96E-10
17	GO:0009735: response to cytokinin	1.65E-09
18	GO:0032544: plastid translation	5.35E-09
19	GO:0015995: chlorophyll biosynthetic process	3.62E-08
20	GO:0010207: photosystem II assembly	1.42E-07
21	GO:0090391: granum assembly	2.96E-05
22	GO:0010206: photosystem II repair	3.95E-05
23	GO:0010205: photoinhibition	5.23E-05
24	GO:0051513: regulation of monopolar cell growth	6.40E-05
25	GO:0010027: thylakoid membrane organization	1.61E-04
26	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.05E-04
27	GO:0009772: photosynthetic electron transport in photosystem II	4.25E-04
28	GO:0010196: nonphotochemical quenching	4.25E-04
29	GO:1904966: positive regulation of vitamin E biosynthetic process	4.40E-04
30	GO:0043266: regulation of potassium ion transport	4.40E-04
31	GO:0000481: maturation of 5S rRNA	4.40E-04
32	GO:1904964: positive regulation of phytol biosynthetic process	4.40E-04
33	GO:0042759: long-chain fatty acid biosynthetic process	4.40E-04
34	GO:0042371: vitamin K biosynthetic process	4.40E-04
35	GO:2000021: regulation of ion homeostasis	4.40E-04
36	GO:0071588: hydrogen peroxide mediated signaling pathway	4.40E-04
37	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	4.40E-04
38	GO:0009090: homoserine biosynthetic process	4.40E-04
39	GO:0043489: RNA stabilization	4.40E-04
40	GO:0009306: protein secretion	4.52E-04
41	GO:0046620: regulation of organ growth	5.32E-04
42	GO:0042335: cuticle development	5.54E-04
43	GO:0009664: plant-type cell wall organization	7.94E-04
44	GO:0006779: porphyrin-containing compound biosynthetic process	9.15E-04
45	GO:0010541: acropetal auxin transport	9.50E-04
46	GO:0001736: establishment of planar polarity	9.50E-04
47	GO:0006729: tetrahydrobiopterin biosynthetic process	9.50E-04
48	GO:0006568: tryptophan metabolic process	9.50E-04
49	GO:0010024: phytochromobilin biosynthetic process	9.50E-04
50	GO:1902326: positive regulation of chlorophyll biosynthetic process	9.50E-04
51	GO:0009828: plant-type cell wall loosening	1.02E-03
52	GO:0006782: protoporphyrinogen IX biosynthetic process	1.06E-03
53	GO:0009773: photosynthetic electron transport in photosystem I	1.23E-03
54	GO:0016024: CDP-diacylglycerol biosynthetic process	1.40E-03
55	GO:0010160: formation of animal organ boundary	1.55E-03
56	GO:0080055: low-affinity nitrate transport	1.55E-03
57	GO:0045493: xylan catabolic process	1.55E-03
58	GO:1902448: positive regulation of shade avoidance	1.55E-03
59	GO:0015714: phosphoenolpyruvate transport	1.55E-03
60	GO:0006518: peptide metabolic process	1.55E-03
61	GO:0006788: heme oxidation	1.55E-03
62	GO:0006006: glucose metabolic process	1.59E-03
63	GO:0009658: chloroplast organization	1.64E-03
64	GO:1901332: negative regulation of lateral root development	2.24E-03
65	GO:0006986: response to unfolded protein	2.24E-03
66	GO:0055070: copper ion homeostasis	2.24E-03
67	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	2.24E-03
68	GO:2001141: regulation of RNA biosynthetic process	2.24E-03
69	GO:0009067: aspartate family amino acid biosynthetic process	2.24E-03
70	GO:0071484: cellular response to light intensity	2.24E-03
71	GO:0009102: biotin biosynthetic process	2.24E-03
72	GO:0051085: chaperone mediated protein folding requiring cofactor	2.24E-03
73	GO:0051639: actin filament network formation	2.24E-03
74	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.24E-03
75	GO:0080170: hydrogen peroxide transmembrane transport	2.24E-03
76	GO:0009650: UV protection	2.24E-03
77	GO:0043481: anthocyanin accumulation in tissues in response to UV light	2.24E-03
78	GO:0010306: rhamnogalacturonan II biosynthetic process	2.24E-03
79	GO:0006636: unsaturated fatty acid biosynthetic process	2.25E-03
80	GO:0009733: response to auxin	2.53E-03
81	GO:0034599: cellular response to oxidative stress	2.55E-03
82	GO:0030001: metal ion transport	2.84E-03
83	GO:0015713: phosphoglycerate transport	3.01E-03
84	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	3.01E-03
85	GO:0051764: actin crosslink formation	3.01E-03
86	GO:0045727: positive regulation of translation	3.01E-03
87	GO:0030104: water homeostasis	3.01E-03
88	GO:0009926: auxin polar transport	3.33E-03
89	GO:0045490: pectin catabolic process	3.48E-03
90	GO:0010236: plastoquinone biosynthetic process	3.85E-03
91	GO:0035434: copper ion transmembrane transport	3.85E-03
92	GO:0048443: stamen development	3.93E-03
93	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.26E-03
94	GO:0080022: primary root development	4.60E-03
95	GO:0000413: protein peptidyl-prolyl isomerization	4.60E-03
96	GO:0006751: glutathione catabolic process	4.77E-03
97	GO:0042549: photosystem II stabilization	4.77E-03
98	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.77E-03
99	GO:0009913: epidermal cell differentiation	4.77E-03
100	GO:0006655: phosphatidylglycerol biosynthetic process	4.77E-03
101	GO:0060918: auxin transport	4.77E-03
102	GO:0009958: positive gravitropism	4.97E-03
103	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.75E-03
104	GO:0017148: negative regulation of translation	5.75E-03
105	GO:1901259: chloroplast rRNA processing	5.75E-03
106	GO:0009854: oxidative photosynthetic carbon pathway	5.75E-03
107	GO:0009088: threonine biosynthetic process	5.75E-03
108	GO:0010019: chloroplast-nucleus signaling pathway	5.75E-03
109	GO:0042372: phylloquinone biosynthetic process	5.75E-03
110	GO:0000302: response to reactive oxygen species	6.14E-03
111	GO:1900057: positive regulation of leaf senescence	6.80E-03
112	GO:0006605: protein targeting	7.91E-03
113	GO:0032508: DNA duplex unwinding	7.91E-03
114	GO:0048564: photosystem I assembly	7.91E-03
115	GO:0030091: protein repair	7.91E-03
116	GO:0008610: lipid biosynthetic process	7.91E-03
117	GO:0009734: auxin-activated signaling pathway	8.67E-03
118	GO:0071482: cellular response to light stimulus	9.09E-03
119	GO:0048589: developmental growth	1.03E-02
120	GO:0009051: pentose-phosphate shunt, oxidative branch	1.03E-02
121	GO:0009245: lipid A biosynthetic process	1.03E-02
122	GO:0009086: methionine biosynthetic process	1.16E-02
123	GO:0010311: lateral root formation	1.22E-02
124	GO:0045454: cell redox homeostasis	1.24E-02
125	GO:0009416: response to light stimulus	1.29E-02
126	GO:0006535: cysteine biosynthetic process from serine	1.30E-02
127	GO:0048829: root cap development	1.30E-02
128	GO:0006949: syncytium formation	1.30E-02
129	GO:0009631: cold acclimation	1.35E-02
130	GO:0009793: embryo development ending in seed dormancy	1.38E-02
131	GO:1903507: negative regulation of nucleic acid-templated transcription	1.44E-02
132	GO:0006352: DNA-templated transcription, initiation	1.44E-02
133	GO:0018119: peptidyl-cysteine S-nitrosylation	1.44E-02
134	GO:0048765: root hair cell differentiation	1.44E-02
135	GO:0010015: root morphogenesis	1.44E-02
136	GO:0009089: lysine biosynthetic process via diaminopimelate	1.44E-02
137	GO:0043085: positive regulation of catalytic activity	1.44E-02
138	GO:0009637: response to blue light	1.48E-02
139	GO:0009451: RNA modification	1.58E-02
140	GO:0008361: regulation of cell size	1.58E-02
141	GO:0010152: pollen maturation	1.58E-02
142	GO:0016042: lipid catabolic process	1.62E-02
143	GO:0009718: anthocyanin-containing compound biosynthetic process	1.73E-02
144	GO:0009767: photosynthetic electron transport chain	1.73E-02
145	GO:0010588: cotyledon vascular tissue pattern formation	1.73E-02
146	GO:0019253: reductive pentose-phosphate cycle	1.89E-02
147	GO:0010540: basipetal auxin transport	1.89E-02
148	GO:0010143: cutin biosynthetic process	1.89E-02
149	GO:0010114: response to red light	1.91E-02
150	GO:0008152: metabolic process	1.96E-02
151	GO:0006457: protein folding	2.02E-02
152	GO:0010030: positive regulation of seed germination	2.05E-02
153	GO:0010025: wax biosynthetic process	2.21E-02
154	GO:0051017: actin filament bundle assembly	2.38E-02
155	GO:0019344: cysteine biosynthetic process	2.38E-02
156	GO:0000027: ribosomal large subunit assembly	2.38E-02
157	GO:0009826: unidimensional cell growth	2.54E-02
158	GO:0016114: terpenoid biosynthetic process	2.73E-02
159	GO:0003333: amino acid transmembrane transport	2.73E-02
160	GO:0031408: oxylipin biosynthetic process	2.73E-02
161	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.91E-02
162	GO:0035428: hexose transmembrane transport	2.91E-02
163	GO:0009411: response to UV	3.10E-02
164	GO:0071369: cellular response to ethylene stimulus	3.10E-02
165	GO:0080167: response to karrikin	3.49E-02
166	GO:0009624: response to nematode	3.67E-02
167	GO:0034220: ion transmembrane transport	3.68E-02
168	GO:0010087: phloem or xylem histogenesis	3.68E-02
169	GO:0042631: cellular response to water deprivation	3.68E-02
170	GO:0010305: leaf vascular tissue pattern formation	3.88E-02
171	GO:0006662: glycerol ether metabolic process	3.88E-02
172	GO:0048868: pollen tube development	3.88E-02
173	GO:0046323: glucose import	3.88E-02
174	GO:0009742: brassinosteroid mediated signaling pathway	3.89E-02
175	GO:0015986: ATP synthesis coupled proton transport	4.09E-02
176	GO:0048825: cotyledon development	4.30E-02
177	GO:0030163: protein catabolic process	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0004076: biotin synthase activity	0.00E+00
4	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
5	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
6	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
7	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
8	GO:0008887: glycerate kinase activity	0.00E+00
9	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
10	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
11	GO:0019843: rRNA binding	1.62E-19
12	GO:0003735: structural constituent of ribosome	3.83E-16
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.78E-08
14	GO:0005528: FK506 binding	3.75E-07
15	GO:0016851: magnesium chelatase activity	4.12E-07
16	GO:0043023: ribosomal large subunit binding	6.40E-05
17	GO:0010011: auxin binding	1.12E-04
18	GO:0008266: poly(U) RNA binding	1.53E-04
19	GO:0004130: cytochrome-c peroxidase activity	2.46E-04
20	GO:0030570: pectate lyase activity	4.05E-04
21	GO:0045485: omega-6 fatty acid desaturase activity	4.40E-04
22	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	4.40E-04
23	GO:0004163: diphosphomevalonate decarboxylase activity	4.40E-04
24	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	4.40E-04
25	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	4.40E-04
26	GO:0004425: indole-3-glycerol-phosphate synthase activity	4.40E-04
27	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	4.40E-04
28	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	4.40E-04
29	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	4.40E-04
30	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	9.50E-04
31	GO:0003839: gamma-glutamylcyclotransferase activity	9.50E-04
32	GO:0004412: homoserine dehydrogenase activity	9.50E-04
33	GO:0004751: ribose-5-phosphate isomerase activity	1.55E-03
34	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.55E-03
35	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.55E-03
36	GO:0016531: copper chaperone activity	1.55E-03
37	GO:0019829: cation-transporting ATPase activity	1.55E-03
38	GO:0016788: hydrolase activity, acting on ester bonds	1.69E-03
39	GO:0008097: 5S rRNA binding	2.24E-03
40	GO:0004072: aspartate kinase activity	2.24E-03
41	GO:0016829: lyase activity	2.40E-03
42	GO:0051087: chaperone binding	2.75E-03
43	GO:0050661: NADP binding	2.84E-03
44	GO:0052689: carboxylic ester hydrolase activity	2.86E-03
45	GO:0043495: protein anchor	3.01E-03
46	GO:0004392: heme oxygenase (decyclizing) activity	3.01E-03
47	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	3.01E-03
48	GO:0046556: alpha-L-arabinofuranosidase activity	3.01E-03
49	GO:0015120: phosphoglycerate transmembrane transporter activity	3.01E-03
50	GO:0004659: prenyltransferase activity	3.01E-03
51	GO:0001053: plastid sigma factor activity	3.01E-03
52	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.01E-03
53	GO:0016987: sigma factor activity	3.01E-03
54	GO:0010328: auxin influx transmembrane transporter activity	3.01E-03
55	GO:0009044: xylan 1,4-beta-xylosidase activity	3.01E-03
56	GO:0052793: pectin acetylesterase activity	3.01E-03
57	GO:0004040: amidase activity	3.85E-03
58	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.77E-03
59	GO:0016688: L-ascorbate peroxidase activity	4.77E-03
60	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.77E-03
61	GO:0031177: phosphopantetheine binding	4.77E-03
62	GO:0000035: acyl binding	5.75E-03
63	GO:0004124: cysteine synthase activity	5.75E-03
64	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.75E-03
65	GO:0015631: tubulin binding	5.75E-03
66	GO:0004017: adenylate kinase activity	5.75E-03
67	GO:0019899: enzyme binding	6.80E-03
68	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	7.91E-03
69	GO:0005375: copper ion transmembrane transporter activity	9.09E-03
70	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	9.09E-03
71	GO:0016168: chlorophyll binding	9.42E-03
72	GO:0008236: serine-type peptidase activity	1.11E-02
73	GO:0016787: hydrolase activity	1.15E-02
74	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.17E-02
75	GO:0008047: enzyme activator activity	1.30E-02
76	GO:0015020: glucuronosyltransferase activity	1.30E-02
77	GO:0003993: acid phosphatase activity	1.55E-02
78	GO:0008378: galactosyltransferase activity	1.58E-02
79	GO:0010329: auxin efflux transmembrane transporter activity	1.73E-02
80	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.73E-02
81	GO:0031072: heat shock protein binding	1.73E-02
82	GO:0009982: pseudouridine synthase activity	1.73E-02
83	GO:0004565: beta-galactosidase activity	1.73E-02
84	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.08E-02
85	GO:0042802: identical protein binding	2.08E-02
86	GO:0003714: transcription corepressor activity	2.38E-02
87	GO:0004707: MAP kinase activity	2.73E-02
88	GO:0022891: substrate-specific transmembrane transporter activity	3.10E-02
89	GO:0003756: protein disulfide isomerase activity	3.29E-02
90	GO:0047134: protein-disulfide reductase activity	3.48E-02
91	GO:0051082: unfolded protein binding	3.67E-02
92	GO:0005509: calcium ion binding	3.72E-02
93	GO:0016746: transferase activity, transferring acyl groups	3.78E-02
94	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.88E-02
95	GO:0008080: N-acetyltransferase activity	3.88E-02
96	GO:0004791: thioredoxin-disulfide reductase activity	4.09E-02
97	GO:0005355: glucose transmembrane transporter activity	4.09E-02
98	GO:0050662: coenzyme binding	4.09E-02
99	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.94E-02
100	GO:0051015: actin filament binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
4	GO:0009507: chloroplast	3.11E-57
5	GO:0009570: chloroplast stroma	6.70E-51
6	GO:0009941: chloroplast envelope	9.29E-39
7	GO:0009535: chloroplast thylakoid membrane	1.16E-28
8	GO:0009579: thylakoid	8.99E-28
9	GO:0009534: chloroplast thylakoid	1.02E-23
10	GO:0009543: chloroplast thylakoid lumen	1.06E-22
11	GO:0005840: ribosome	3.69E-17
12	GO:0031977: thylakoid lumen	9.12E-15
13	GO:0010007: magnesium chelatase complex	8.58E-08
14	GO:0030095: chloroplast photosystem II	1.42E-07
15	GO:0009654: photosystem II oxygen evolving complex	1.63E-05
16	GO:0031969: chloroplast membrane	1.91E-05
17	GO:0019898: extrinsic component of membrane	7.21E-05
18	GO:0000311: plastid large ribosomal subunit	1.05E-04
19	GO:0016020: membrane	1.31E-04
20	GO:0009533: chloroplast stromal thylakoid	4.25E-04
21	GO:0009515: granal stacked thylakoid	4.40E-04
22	GO:0009547: plastid ribosome	4.40E-04
23	GO:0043674: columella	4.40E-04
24	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	4.40E-04
25	GO:0009538: photosystem I reaction center	5.32E-04
26	GO:0009523: photosystem II	7.33E-04
27	GO:0030093: chloroplast photosystem I	9.50E-04
28	GO:0009295: nucleoid	1.10E-03
29	GO:0032040: small-subunit processome	1.40E-03
30	GO:0009509: chromoplast	1.55E-03
31	GO:0033281: TAT protein transport complex	1.55E-03
32	GO:0009508: plastid chromosome	1.59E-03
33	GO:0009531: secondary cell wall	2.24E-03
34	GO:0032432: actin filament bundle	2.24E-03
35	GO:0042651: thylakoid membrane	2.75E-03
36	GO:0015935: small ribosomal subunit	3.03E-03
37	GO:0005618: cell wall	4.00E-03
38	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	4.77E-03
39	GO:0009522: photosystem I	5.34E-03
40	GO:0009986: cell surface	6.80E-03
41	GO:0042807: central vacuole	6.80E-03
42	GO:0009505: plant-type cell wall	9.13E-03
43	GO:0010287: plastoglobule	9.51E-03
44	GO:0042644: chloroplast nucleoid	1.03E-02
45	GO:0008180: COP9 signalosome	1.03E-02
46	GO:0055028: cortical microtubule	1.30E-02
47	GO:0015934: large ribosomal subunit	1.35E-02
48	GO:0005884: actin filament	1.44E-02
49	GO:0000312: plastid small ribosomal subunit	1.89E-02
50	GO:0009536: plastid	2.34E-02
51	GO:0005768: endosome	3.57E-02
52	GO:0009706: chloroplast inner membrane	3.67E-02
53	GO:0022625: cytosolic large ribosomal subunit	3.71E-02
54	GO:0005576: extracellular region	3.81E-02