co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G43550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
2	GO:0070125: mitochondrial translational elongation	0.00E+00
3	GO:0006223: uracil salvage	0.00E+00
4	GO:0042407: cristae formation	0.00E+00
5	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
6	GO:0010037: response to carbon dioxide	2.11E-05
7	GO:0015976: carbon utilization	2.11E-05
8	GO:2000122: negative regulation of stomatal complex development	2.11E-05
9	GO:0006546: glycine catabolic process	2.11E-05
10	GO:0016117: carotenoid biosynthetic process	6.96E-05
11	GO:0042547: cell wall modification involved in multidimensional cell growth	1.64E-04
12	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.64E-04
13	GO:0010442: guard cell morphogenesis	1.64E-04
14	GO:0010480: microsporocyte differentiation	1.64E-04
15	GO:0045454: cell redox homeostasis	2.54E-04
16	GO:0006412: translation	3.49E-04
17	GO:0080183: response to photooxidative stress	3.73E-04
18	GO:2000123: positive regulation of stomatal complex development	3.73E-04
19	GO:0043039: tRNA aminoacylation	3.73E-04
20	GO:0052541: plant-type cell wall cellulose metabolic process	3.73E-04
21	GO:0006423: cysteinyl-tRNA aminoacylation	3.73E-04
22	GO:0044208: 'de novo' AMP biosynthetic process	3.73E-04
23	GO:0009934: regulation of meristem structural organization	4.55E-04
24	GO:0006696: ergosterol biosynthetic process	6.11E-04
25	GO:2001295: malonyl-CoA biosynthetic process	6.11E-04
26	GO:0090506: axillary shoot meristem initiation	6.11E-04
27	GO:0061077: chaperone-mediated protein folding	7.57E-04
28	GO:0042254: ribosome biogenesis	7.91E-04
29	GO:0055114: oxidation-reduction process	8.61E-04
30	GO:0051085: chaperone mediated protein folding requiring cofactor	8.73E-04
31	GO:0019048: modulation by virus of host morphology or physiology	8.73E-04
32	GO:0051016: barbed-end actin filament capping	8.73E-04
33	GO:0031048: chromatin silencing by small RNA	8.73E-04
34	GO:0010088: phloem development	8.73E-04
35	GO:0042742: defense response to bacterium	9.33E-04
36	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.12E-03
37	GO:0000413: protein peptidyl-prolyl isomerization	1.13E-03
38	GO:0009956: radial pattern formation	1.16E-03
39	GO:0006808: regulation of nitrogen utilization	1.16E-03
40	GO:0051322: anaphase	1.16E-03
41	GO:0019464: glycine decarboxylation via glycine cleavage system	1.16E-03
42	GO:0009765: photosynthesis, light harvesting	1.16E-03
43	GO:2000038: regulation of stomatal complex development	1.16E-03
44	GO:0051567: histone H3-K9 methylation	1.16E-03
45	GO:0044206: UMP salvage	1.16E-03
46	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.16E-03
47	GO:0015979: photosynthesis	1.29E-03
48	GO:0016123: xanthophyll biosynthetic process	1.47E-03
49	GO:0010375: stomatal complex patterning	1.47E-03
50	GO:0048359: mucilage metabolic process involved in seed coat development	1.47E-03
51	GO:0016120: carotene biosynthetic process	1.47E-03
52	GO:0043097: pyrimidine nucleoside salvage	1.47E-03
53	GO:0032502: developmental process	1.59E-03
54	GO:0009409: response to cold	1.69E-03
55	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.80E-03
56	GO:0006555: methionine metabolic process	1.80E-03
57	GO:0006206: pyrimidine nucleobase metabolic process	1.80E-03
58	GO:0032973: amino acid export	1.80E-03
59	GO:0016458: gene silencing	1.80E-03
60	GO:0007267: cell-cell signaling	1.91E-03
61	GO:0048444: floral organ morphogenesis	2.17E-03
62	GO:0010555: response to mannitol	2.17E-03
63	GO:0009955: adaxial/abaxial pattern specification	2.17E-03
64	GO:0010067: procambium histogenesis	2.17E-03
65	GO:0042026: protein refolding	2.17E-03
66	GO:0006694: steroid biosynthetic process	2.17E-03
67	GO:1901259: chloroplast rRNA processing	2.17E-03
68	GO:0006633: fatty acid biosynthetic process	2.20E-03
69	GO:0045490: pectin catabolic process	2.48E-03
70	GO:0006955: immune response	2.55E-03
71	GO:0048528: post-embryonic root development	2.55E-03
72	GO:0043090: amino acid import	2.55E-03
73	GO:0051693: actin filament capping	2.55E-03
74	GO:0048437: floral organ development	2.55E-03
75	GO:0010196: nonphotochemical quenching	2.55E-03
76	GO:0048564: photosystem I assembly	2.95E-03
77	GO:0009819: drought recovery	2.95E-03
78	GO:0009642: response to light intensity	2.95E-03
79	GO:0042255: ribosome assembly	2.95E-03
80	GO:0006353: DNA-templated transcription, termination	2.95E-03
81	GO:0010119: regulation of stomatal movement	3.21E-03
82	GO:0009808: lignin metabolic process	3.37E-03
83	GO:0032544: plastid translation	3.37E-03
84	GO:0006189: 'de novo' IMP biosynthetic process	3.81E-03
85	GO:0000902: cell morphogenesis	3.81E-03
86	GO:0015780: nucleotide-sugar transport	3.81E-03
87	GO:0010206: photosystem II repair	3.81E-03
88	GO:0080144: amino acid homeostasis	3.81E-03
89	GO:0009735: response to cytokinin	3.98E-03
90	GO:0043067: regulation of programmed cell death	4.27E-03
91	GO:0035999: tetrahydrofolate interconversion	4.27E-03
92	GO:0009658: chloroplast organization	4.31E-03
93	GO:0030422: production of siRNA involved in RNA interference	4.75E-03
94	GO:0009793: embryo development ending in seed dormancy	4.87E-03
95	GO:0018119: peptidyl-cysteine S-nitrosylation	5.25E-03
96	GO:0048229: gametophyte development	5.25E-03
97	GO:0010015: root morphogenesis	5.25E-03
98	GO:0009773: photosynthetic electron transport in photosystem I	5.25E-03
99	GO:0043085: positive regulation of catalytic activity	5.25E-03
100	GO:0045037: protein import into chloroplast stroma	5.77E-03
101	GO:0030036: actin cytoskeleton organization	6.30E-03
102	GO:0010075: regulation of meristem growth	6.30E-03
103	GO:0010223: secondary shoot formation	6.85E-03
104	GO:0048768: root hair cell tip growth	6.85E-03
105	GO:0009933: meristem structural organization	6.85E-03
106	GO:0007015: actin filament organization	6.85E-03
107	GO:0006071: glycerol metabolic process	8.00E-03
108	GO:0006636: unsaturated fatty acid biosynthetic process	8.00E-03
109	GO:0019344: cysteine biosynthetic process	8.59E-03
110	GO:0009116: nucleoside metabolic process	8.59E-03
111	GO:0051302: regulation of cell division	9.21E-03
112	GO:0006418: tRNA aminoacylation for protein translation	9.21E-03
113	GO:0010026: trichome differentiation	9.21E-03
114	GO:0016998: cell wall macromolecule catabolic process	9.84E-03
115	GO:0006306: DNA methylation	9.84E-03
116	GO:0007005: mitochondrion organization	1.05E-02
117	GO:0080092: regulation of pollen tube growth	1.05E-02
118	GO:0009814: defense response, incompatible interaction	1.05E-02
119	GO:0006730: one-carbon metabolic process	1.05E-02
120	GO:0001944: vasculature development	1.11E-02
121	GO:0010089: xylem development	1.18E-02
122	GO:0019722: calcium-mediated signaling	1.18E-02
123	GO:0008033: tRNA processing	1.32E-02
124	GO:0010087: phloem or xylem histogenesis	1.32E-02
125	GO:0048653: anther development	1.32E-02
126	GO:0000226: microtubule cytoskeleton organization	1.32E-02
127	GO:0010197: polar nucleus fusion	1.39E-02
128	GO:0006342: chromatin silencing	1.39E-02
129	GO:0010305: leaf vascular tissue pattern formation	1.39E-02
130	GO:0006662: glycerol ether metabolic process	1.39E-02
131	GO:0007018: microtubule-based movement	1.47E-02
132	GO:0016132: brassinosteroid biosynthetic process	1.62E-02
133	GO:0071554: cell wall organization or biogenesis	1.62E-02
134	GO:0002229: defense response to oomycetes	1.62E-02
135	GO:0007264: small GTPase mediated signal transduction	1.70E-02
136	GO:0016125: sterol metabolic process	1.86E-02
137	GO:0010286: heat acclimation	1.94E-02
138	GO:0051607: defense response to virus	2.02E-02
139	GO:0000910: cytokinesis	2.02E-02
140	GO:0016126: sterol biosynthetic process	2.10E-02
141	GO:0051301: cell division	2.14E-02
142	GO:0009816: defense response to bacterium, incompatible interaction	2.19E-02
143	GO:0009627: systemic acquired resistance	2.27E-02
144	GO:0006810: transport	2.36E-02
145	GO:0015995: chlorophyll biosynthetic process	2.36E-02
146	GO:0010411: xyloglucan metabolic process	2.36E-02
147	GO:0008219: cell death	2.54E-02
148	GO:0009817: defense response to fungus, incompatible interaction	2.54E-02
149	GO:0006457: protein folding	2.66E-02
150	GO:0009834: plant-type secondary cell wall biogenesis	2.72E-02
151	GO:0009407: toxin catabolic process	2.72E-02
152	GO:0007568: aging	2.82E-02
153	GO:0034599: cellular response to oxidative stress	3.10E-02
154	GO:0006839: mitochondrial transport	3.30E-02
155	GO:0051707: response to other organism	3.60E-02
156	GO:0008283: cell proliferation	3.60E-02
157	GO:0042546: cell wall biogenesis	3.70E-02
158	GO:0008643: carbohydrate transport	3.81E-02
159	GO:0009636: response to toxic substance	3.91E-02
160	GO:0042538: hyperosmotic salinity response	4.23E-02
161	GO:0006629: lipid metabolic process	4.26E-02
162	GO:0071555: cell wall organization	4.62E-02
163	GO:0006417: regulation of translation	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
7	GO:0004496: mevalonate kinase activity	0.00E+00
8	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
9	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
10	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
11	GO:0046905: phytoene synthase activity	0.00E+00
12	GO:0019843: rRNA binding	1.69E-09
13	GO:0051920: peroxiredoxin activity	3.27E-09
14	GO:0016209: antioxidant activity	1.17E-08
15	GO:0030570: pectate lyase activity	5.39E-05
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.51E-05
17	GO:0003735: structural constituent of ribosome	6.66E-05
18	GO:0004018: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	1.64E-04
19	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.64E-04
20	GO:0070626: (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity	1.64E-04
21	GO:0042834: peptidoglycan binding	1.64E-04
22	GO:0004831: tyrosine-tRNA ligase activity	1.64E-04
23	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	1.64E-04
24	GO:0051996: squalene synthase activity	1.64E-04
25	GO:0042389: omega-3 fatty acid desaturase activity	3.73E-04
26	GO:0004047: aminomethyltransferase activity	3.73E-04
27	GO:0004817: cysteine-tRNA ligase activity	3.73E-04
28	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	3.73E-04
29	GO:0004089: carbonate dehydratase activity	4.03E-04
30	GO:0030267: glyoxylate reductase (NADP) activity	6.11E-04
31	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	6.11E-04
32	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	6.11E-04
33	GO:0017150: tRNA dihydrouridine synthase activity	6.11E-04
34	GO:0004148: dihydrolipoyl dehydrogenase activity	6.11E-04
35	GO:0004075: biotin carboxylase activity	6.11E-04
36	GO:0005528: FK506 binding	6.27E-04
37	GO:0033612: receptor serine/threonine kinase binding	7.57E-04
38	GO:0004601: peroxidase activity	7.69E-04
39	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	8.73E-04
40	GO:0004375: glycine dehydrogenase (decarboxylating) activity	8.73E-04
41	GO:0035197: siRNA binding	8.73E-04
42	GO:0004845: uracil phosphoribosyltransferase activity	1.16E-03
43	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.16E-03
44	GO:1990137: plant seed peroxidase activity	1.16E-03
45	GO:0003989: acetyl-CoA carboxylase activity	1.47E-03
46	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.47E-03
47	GO:0004849: uridine kinase activity	2.17E-03
48	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.17E-03
49	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.37E-03
50	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.81E-03
51	GO:0047617: acyl-CoA hydrolase activity	4.27E-03
52	GO:0008047: enzyme activator activity	4.75E-03
53	GO:0043621: protein self-association	4.90E-03
54	GO:0044183: protein binding involved in protein folding	5.25E-03
55	GO:0005089: Rho guanyl-nucleotide exchange factor activity	5.25E-03
56	GO:0004521: endoribonuclease activity	5.77E-03
57	GO:0004565: beta-galactosidase activity	6.30E-03
58	GO:0019706: protein-cysteine S-palmitoyltransferase activity	9.84E-03
59	GO:0003727: single-stranded RNA binding	1.18E-02
60	GO:0008514: organic anion transmembrane transporter activity	1.18E-02
61	GO:0016829: lyase activity	1.18E-02
62	GO:0047134: protein-disulfide reductase activity	1.25E-02
63	GO:0004812: aminoacyl-tRNA ligase activity	1.25E-02
64	GO:0005102: receptor binding	1.25E-02
65	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.39E-02
66	GO:0008080: N-acetyltransferase activity	1.39E-02
67	GO:0004791: thioredoxin-disulfide reductase activity	1.47E-02
68	GO:0019901: protein kinase binding	1.54E-02
69	GO:0008017: microtubule binding	1.58E-02
70	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.62E-02
71	GO:0004518: nuclease activity	1.70E-02
72	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.77E-02
73	GO:0051015: actin filament binding	1.77E-02
74	GO:0016759: cellulose synthase activity	1.86E-02
75	GO:0008483: transaminase activity	1.94E-02
76	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.94E-02
77	GO:0016491: oxidoreductase activity	2.01E-02
78	GO:0016413: O-acetyltransferase activity	2.02E-02
79	GO:0005515: protein binding	2.17E-02
80	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.36E-02
81	GO:0008236: serine-type peptidase activity	2.45E-02
82	GO:0050660: flavin adenine dinucleotide binding	2.70E-02
83	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.72E-02
84	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.82E-02
85	GO:0003746: translation elongation factor activity	3.01E-02
86	GO:0005516: calmodulin binding	3.21E-02
87	GO:0004364: glutathione transferase activity	3.50E-02
88	GO:0051537: 2 iron, 2 sulfur cluster binding	3.81E-02
89	GO:0005509: calcium ion binding	4.19E-02
90	GO:0003690: double-stranded DNA binding	4.56E-02
91	GO:0009055: electron carrier activity	4.56E-02
92	GO:0003777: microtubule motor activity	4.78E-02
93	GO:0015171: amino acid transmembrane transporter activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009507: chloroplast	2.02E-26
3	GO:0009570: chloroplast stroma	2.39E-22
4	GO:0009941: chloroplast envelope	7.46E-22
5	GO:0009579: thylakoid	1.50E-15
6	GO:0009543: chloroplast thylakoid lumen	5.12E-11
7	GO:0031977: thylakoid lumen	1.40E-09
8	GO:0009535: chloroplast thylakoid membrane	3.94E-08
9	GO:0048046: apoplast	8.00E-08
10	GO:0010319: stromule	8.16E-06
11	GO:0000311: plastid large ribosomal subunit	1.10E-05
12	GO:0005840: ribosome	4.69E-05
13	GO:0009534: chloroplast thylakoid	5.68E-05
14	GO:0015934: large ribosomal subunit	3.55E-04
15	GO:0008290: F-actin capping protein complex	3.73E-04
16	GO:0042170: plastid membrane	3.73E-04
17	GO:0030095: chloroplast photosystem II	4.55E-04
18	GO:0031225: anchored component of membrane	5.55E-04
19	GO:0005875: microtubule associated complex	5.67E-04
20	GO:0046658: anchored component of plasma membrane	6.07E-04
21	GO:0009654: photosystem II oxygen evolving complex	6.90E-04
22	GO:0005960: glycine cleavage complex	8.73E-04
23	GO:0005719: nuclear euchromatin	8.73E-04
24	GO:0022626: cytosolic ribosome	9.64E-04
25	GO:0019898: extrinsic component of membrane	1.40E-03
26	GO:0009505: plant-type cell wall	1.45E-03
27	GO:0072686: mitotic spindle	1.47E-03
28	GO:0010287: plastoglobule	1.54E-03
29	GO:0009533: chloroplast stromal thylakoid	2.55E-03
30	GO:0005811: lipid particle	3.37E-03
31	GO:0005763: mitochondrial small ribosomal subunit	3.81E-03
32	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.81E-03
33	GO:0000922: spindle pole	3.81E-03
34	GO:0015030: Cajal body	4.27E-03
35	GO:0055028: cortical microtubule	4.75E-03
36	GO:0016324: apical plasma membrane	4.75E-03
37	GO:0009536: plastid	5.12E-03
38	GO:0005884: actin filament	5.25E-03
39	GO:0009574: preprophase band	6.30E-03
40	GO:0030659: cytoplasmic vesicle membrane	6.85E-03
41	GO:0009706: chloroplast inner membrane	8.68E-03
42	GO:0042651: thylakoid membrane	9.21E-03
43	GO:0005871: kinesin complex	1.25E-02
44	GO:0005618: cell wall	1.39E-02
45	GO:0016592: mediator complex	1.70E-02
46	GO:0030529: intracellular ribonucleoprotein complex	2.10E-02
47	GO:0005874: microtubule	2.80E-02
48	GO:0031969: chloroplast membrane	2.89E-02
49	GO:0005819: spindle	3.20E-02