co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G43360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0006412: translation	7.37E-15
5	GO:0042254: ribosome biogenesis	3.61E-10
6	GO:0032544: plastid translation	1.42E-09
7	GO:0009735: response to cytokinin	2.76E-08
8	GO:0015979: photosynthesis	1.02E-06
9	GO:0090391: granum assembly	1.08E-06
10	GO:0015995: chlorophyll biosynthetic process	1.26E-06
11	GO:0009772: photosynthetic electron transport in photosystem II	2.51E-05
12	GO:0042371: vitamin K biosynthetic process	7.07E-05
13	GO:0009773: photosynthetic electron transport in photosystem I	9.12E-05
14	GO:0010541: acropetal auxin transport	1.70E-04
15	GO:0006729: tetrahydrobiopterin biosynthetic process	1.70E-04
16	GO:0010160: formation of animal organ boundary	2.86E-04
17	GO:0006986: response to unfolded protein	4.15E-04
18	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	4.15E-04
19	GO:0071484: cellular response to light intensity	4.15E-04
20	GO:0051085: chaperone mediated protein folding requiring cofactor	4.15E-04
21	GO:0006241: CTP biosynthetic process	4.15E-04
22	GO:0043481: anthocyanin accumulation in tissues in response to UV light	4.15E-04
23	GO:0006165: nucleoside diphosphate phosphorylation	4.15E-04
24	GO:0006228: UTP biosynthetic process	4.15E-04
25	GO:0009790: embryo development	4.79E-04
26	GO:0006183: GTP biosynthetic process	5.53E-04
27	GO:0010236: plastoquinone biosynthetic process	7.00E-04
28	GO:0010027: thylakoid membrane organization	7.13E-04
29	GO:0060918: auxin transport	8.57E-04
30	GO:0042372: phylloquinone biosynthetic process	1.02E-03
31	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.02E-03
32	GO:0017148: negative regulation of translation	1.02E-03
33	GO:0010196: nonphotochemical quenching	1.19E-03
34	GO:0048564: photosystem I assembly	1.37E-03
35	GO:0010206: photosystem II repair	1.76E-03
36	GO:0006779: porphyrin-containing compound biosynthetic process	1.97E-03
37	GO:0006535: cysteine biosynthetic process from serine	2.19E-03
38	GO:0006949: syncytium formation	2.19E-03
39	GO:0006782: protoporphyrinogen IX biosynthetic process	2.19E-03
40	GO:0018119: peptidyl-cysteine S-nitrosylation	2.41E-03
41	GO:0008361: regulation of cell size	2.64E-03
42	GO:0010207: photosystem II assembly	3.12E-03
43	GO:0010540: basipetal auxin transport	3.12E-03
44	GO:0006508: proteolysis	3.33E-03
45	GO:0019344: cysteine biosynthetic process	3.89E-03
46	GO:0000027: ribosomal large subunit assembly	3.89E-03
47	GO:0030245: cellulose catabolic process	4.73E-03
48	GO:0009411: response to UV	5.02E-03
49	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.02E-03
50	GO:0048443: stamen development	5.32E-03
51	GO:0009958: positive gravitropism	6.24E-03
52	GO:0015986: ATP synthesis coupled proton transport	6.56E-03
53	GO:0009658: chloroplast organization	7.36E-03
54	GO:0009639: response to red or far red light	8.25E-03
55	GO:0009828: plant-type cell wall loosening	8.25E-03
56	GO:0009567: double fertilization forming a zygote and endosperm	8.25E-03
57	GO:0009627: systemic acquired resistance	1.01E-02
58	GO:0042742: defense response to bacterium	1.09E-02
59	GO:0009817: defense response to fungus, incompatible interaction	1.13E-02
60	GO:0010218: response to far red light	1.21E-02
61	GO:0048527: lateral root development	1.25E-02
62	GO:0009637: response to blue light	1.33E-02
63	GO:0030001: metal ion transport	1.46E-02
64	GO:0042542: response to hydrogen peroxide	1.55E-02
65	GO:0009640: photomorphogenesis	1.59E-02
66	GO:0010114: response to red light	1.59E-02
67	GO:0009926: auxin polar transport	1.59E-02
68	GO:0009664: plant-type cell wall organization	1.87E-02
69	GO:0009734: auxin-activated signaling pathway	1.91E-02
70	GO:0009585: red, far-red light phototransduction	1.97E-02
71	GO:0051603: proteolysis involved in cellular protein catabolic process	2.01E-02
72	GO:0009742: brassinosteroid mediated signaling pathway	2.63E-02
73	GO:0006457: protein folding	3.11E-02
74	GO:0006633: fatty acid biosynthetic process	3.49E-02
75	GO:0045490: pectin catabolic process	3.73E-02
76	GO:0009739: response to gibberellin	4.04E-02
77	GO:0007166: cell surface receptor signaling pathway	4.10E-02
78	GO:0010468: regulation of gene expression	4.23E-02
79	GO:0009826: unidimensional cell growth	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
5	GO:0019843: rRNA binding	4.51E-17
6	GO:0003735: structural constituent of ribosome	3.35E-14
7	GO:0043023: ribosomal large subunit binding	2.59E-06
8	GO:0016851: magnesium chelatase activity	2.59E-06
9	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	7.07E-05
10	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	7.07E-05
11	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	7.07E-05
12	GO:0005528: FK506 binding	2.00E-04
13	GO:0051087: chaperone binding	2.22E-04
14	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	2.86E-04
15	GO:0004550: nucleoside diphosphate kinase activity	4.15E-04
16	GO:0008097: 5S rRNA binding	4.15E-04
17	GO:0001872: (1->3)-beta-D-glucan binding	4.15E-04
18	GO:0004659: prenyltransferase activity	5.53E-04
19	GO:0004040: amidase activity	7.00E-04
20	GO:0004124: cysteine synthase activity	1.02E-03
21	GO:0015631: tubulin binding	1.02E-03
22	GO:0005507: copper ion binding	1.35E-03
23	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.37E-03
24	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.70E-03
25	GO:0010329: auxin efflux transmembrane transporter activity	2.88E-03
26	GO:0008266: poly(U) RNA binding	3.12E-03
27	GO:0030170: pyridoxal phosphate binding	3.84E-03
28	GO:0004252: serine-type endopeptidase activity	3.84E-03
29	GO:0004176: ATP-dependent peptidase activity	4.44E-03
30	GO:0004707: MAP kinase activity	4.44E-03
31	GO:0030570: pectate lyase activity	5.02E-03
32	GO:0008810: cellulase activity	5.02E-03
33	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	6.24E-03
34	GO:0008483: transaminase activity	8.61E-03
35	GO:0008237: metallopeptidase activity	8.61E-03
36	GO:0005509: calcium ion binding	9.85E-03
37	GO:0030247: polysaccharide binding	1.05E-02
38	GO:0008236: serine-type peptidase activity	1.09E-02
39	GO:0003746: translation elongation factor activity	1.33E-02
40	GO:0004185: serine-type carboxypeptidase activity	1.59E-02
41	GO:0016887: ATPase activity	2.10E-02
42	GO:0051082: unfolded protein binding	2.53E-02
43	GO:0016829: lyase activity	3.14E-02
44	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.17E-02
45	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.55E-02
46	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.42E-02
47	GO:0008168: methyltransferase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	4.37E-40
2	GO:0009507: chloroplast	2.10E-29
3	GO:0009941: chloroplast envelope	7.97E-28
4	GO:0009579: thylakoid	1.68E-26
5	GO:0005840: ribosome	3.31E-16
6	GO:0009535: chloroplast thylakoid membrane	7.78E-14
7	GO:0009543: chloroplast thylakoid lumen	1.41E-11
8	GO:0009534: chloroplast thylakoid	1.74E-10
9	GO:0030095: chloroplast photosystem II	1.99E-08
10	GO:0031977: thylakoid lumen	8.56E-08
11	GO:0010007: magnesium chelatase complex	1.08E-06
12	GO:0009654: photosystem II oxygen evolving complex	5.22E-06
13	GO:0019898: extrinsic component of membrane	1.85E-05
14	GO:0009515: granal stacked thylakoid	7.07E-05
15	GO:0009547: plastid ribosome	7.07E-05
16	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	7.07E-05
17	GO:0000311: plastid large ribosomal subunit	1.07E-04
18	GO:0000312: plastid small ribosomal subunit	1.41E-04
19	GO:0030093: chloroplast photosystem I	1.70E-04
20	GO:0009509: chromoplast	2.86E-04
21	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	8.57E-04
22	GO:0016020: membrane	1.30E-03
23	GO:0005618: cell wall	1.40E-03
24	GO:0009508: plastid chromosome	2.88E-03
25	GO:0009536: plastid	3.13E-03
26	GO:0005759: mitochondrial matrix	4.34E-03
27	GO:0015935: small ribosomal subunit	4.44E-03
28	GO:0022627: cytosolic small ribosomal subunit	6.30E-03
29	GO:0009523: photosystem II	6.89E-03
30	GO:0010319: stromule	8.61E-03
31	GO:0009295: nucleoid	8.61E-03
32	GO:0022626: cytosolic ribosome	2.30E-02
33	GO:0009706: chloroplast inner membrane	2.53E-02
34	GO:0010287: plastoglobule	2.85E-02
35	GO:0005802: trans-Golgi network	3.84E-02
36	GO:0005768: endosome	4.36E-02
37	GO:0046658: anchored component of plasma membrane	4.55E-02