Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G42880

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000505: regulation of energy homeostasis0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0045014: negative regulation of transcription by glucose0.00E+00
4GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
5GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0090071: negative regulation of ribosome biogenesis0.00E+00
8GO:0042493: response to drug0.00E+00
9GO:0042371: vitamin K biosynthetic process0.00E+00
10GO:1900000: regulation of anthocyanin catabolic process0.00E+00
11GO:0006412: translation1.33E-10
12GO:0032544: plastid translation3.50E-09
13GO:0015995: chlorophyll biosynthetic process2.08E-08
14GO:0042254: ribosome biogenesis3.88E-08
15GO:0015979: photosynthesis2.01E-06
16GO:0009735: response to cytokinin5.29E-06
17GO:0010027: thylakoid membrane organization8.23E-06
18GO:0010206: photosystem II repair3.10E-05
19GO:0016024: CDP-diacylglycerol biosynthetic process8.34E-05
20GO:0006183: GTP biosynthetic process9.42E-05
21GO:0010207: photosystem II assembly1.22E-04
22GO:0009825: multidimensional cell growth1.45E-04
23GO:0006833: water transport1.70E-04
24GO:0006655: phosphatidylglycerol biosynthetic process2.10E-04
25GO:0042372: phylloquinone biosynthetic process2.83E-04
26GO:1901259: chloroplast rRNA processing2.83E-04
27GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.31E-04
28GO:0009772: photosynthetic electron transport in photosystem II3.65E-04
29GO:0060627: regulation of vesicle-mediated transport3.97E-04
30GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process3.97E-04
31GO:0043489: RNA stabilization3.97E-04
32GO:1904966: positive regulation of vitamin E biosynthetic process3.97E-04
33GO:0000481: maturation of 5S rRNA3.97E-04
34GO:1904964: positive regulation of phytol biosynthetic process3.97E-04
35GO:0042759: long-chain fatty acid biosynthetic process3.97E-04
36GO:1902458: positive regulation of stomatal opening3.97E-04
37GO:0034337: RNA folding3.97E-04
38GO:0071588: hydrogen peroxide mediated signaling pathway3.97E-04
39GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.97E-04
40GO:0042335: cuticle development4.56E-04
41GO:0034220: ion transmembrane transport4.56E-04
42GO:0006353: DNA-templated transcription, termination4.58E-04
43GO:0009828: plant-type cell wall loosening8.40E-04
44GO:0043255: regulation of carbohydrate biosynthetic process8.60E-04
45GO:1902326: positive regulation of chlorophyll biosynthetic process8.60E-04
46GO:0010541: acropetal auxin transport8.60E-04
47GO:0001736: establishment of planar polarity8.60E-04
48GO:1903426: regulation of reactive oxygen species biosynthetic process8.60E-04
49GO:0010289: homogalacturonan biosynthetic process8.60E-04
50GO:0009773: photosynthetic electron transport in photosystem I1.06E-03
51GO:0018119: peptidyl-cysteine S-nitrosylation1.06E-03
52GO:0071555: cell wall organization1.32E-03
53GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement1.40E-03
54GO:0090391: granum assembly1.40E-03
55GO:0006518: peptide metabolic process1.40E-03
56GO:0080055: low-affinity nitrate transport1.40E-03
57GO:0010160: formation of animal organ boundary1.40E-03
58GO:0015840: urea transport1.40E-03
59GO:0010025: wax biosynthetic process1.93E-03
60GO:0051639: actin filament network formation2.02E-03
61GO:0010239: chloroplast mRNA processing2.02E-03
62GO:0009650: UV protection2.02E-03
63GO:0010306: rhamnogalacturonan II biosynthetic process2.02E-03
64GO:0006241: CTP biosynthetic process2.02E-03
65GO:0080170: hydrogen peroxide transmembrane transport2.02E-03
66GO:0043481: anthocyanin accumulation in tissues in response to UV light2.02E-03
67GO:1901332: negative regulation of lateral root development2.02E-03
68GO:0051016: barbed-end actin filament capping2.02E-03
69GO:0006168: adenine salvage2.02E-03
70GO:0006165: nucleoside diphosphate phosphorylation2.02E-03
71GO:0006228: UTP biosynthetic process2.02E-03
72GO:0006166: purine ribonucleoside salvage2.02E-03
73GO:0051513: regulation of monopolar cell growth2.02E-03
74GO:0071484: cellular response to light intensity2.02E-03
75GO:0009102: biotin biosynthetic process2.02E-03
76GO:0034599: cellular response to oxidative stress2.09E-03
77GO:0051017: actin filament bundle assembly2.14E-03
78GO:0051764: actin crosslink formation2.71E-03
79GO:0030104: water homeostasis2.71E-03
80GO:0045727: positive regulation of translation2.71E-03
81GO:0030245: cellulose catabolic process2.84E-03
82GO:0006869: lipid transport2.95E-03
83GO:0009411: response to UV3.10E-03
84GO:0048443: stamen development3.37E-03
85GO:0009306: protein secretion3.37E-03
86GO:0048359: mucilage metabolic process involved in seed coat development3.47E-03
87GO:0010236: plastoquinone biosynthetic process3.47E-03
88GO:0045038: protein import into chloroplast thylakoid membrane3.47E-03
89GO:0044209: AMP salvage3.47E-03
90GO:0042538: hyperosmotic salinity response3.65E-03
91GO:0009664: plant-type cell wall organization3.65E-03
92GO:0009958: positive gravitropism4.26E-03
93GO:0060918: auxin transport4.29E-03
94GO:0010337: regulation of salicylic acid metabolic process4.29E-03
95GO:0035435: phosphate ion transmembrane transport4.29E-03
96GO:0006751: glutathione catabolic process4.29E-03
97GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.29E-03
98GO:0055085: transmembrane transport4.72E-03
99GO:0009826: unidimensional cell growth5.05E-03
100GO:0009733: response to auxin5.15E-03
101GO:0009955: adaxial/abaxial pattern specification5.17E-03
102GO:0017148: negative regulation of translation5.17E-03
103GO:0006694: steroid biosynthetic process5.17E-03
104GO:0010019: chloroplast-nucleus signaling pathway5.17E-03
105GO:0000302: response to reactive oxygen species5.26E-03
106GO:0009658: chloroplast organization5.35E-03
107GO:0051693: actin filament capping6.11E-03
108GO:1900057: positive regulation of leaf senescence6.11E-03
109GO:0010196: nonphotochemical quenching6.11E-03
110GO:0019745: pentacyclic triterpenoid biosynthetic process6.11E-03
111GO:0009734: auxin-activated signaling pathway6.61E-03
112GO:0048564: photosystem I assembly7.10E-03
113GO:0008610: lipid biosynthetic process7.10E-03
114GO:0009690: cytokinin metabolic process7.10E-03
115GO:0006605: protein targeting7.10E-03
116GO:0032508: DNA duplex unwinding7.10E-03
117GO:0042255: ribosome assembly7.10E-03
118GO:2000070: regulation of response to water deprivation7.10E-03
119GO:0009409: response to cold7.71E-03
120GO:0015996: chlorophyll catabolic process8.15E-03
121GO:0007186: G-protein coupled receptor signaling pathway8.15E-03
122GO:0006526: arginine biosynthetic process8.15E-03
123GO:0009808: lignin metabolic process8.15E-03
124GO:0048589: developmental growth9.25E-03
125GO:0000902: cell morphogenesis9.25E-03
126GO:0015780: nucleotide-sugar transport9.25E-03
127GO:0045454: cell redox homeostasis9.76E-03
128GO:0030244: cellulose biosynthetic process9.96E-03
129GO:0010205: photoinhibition1.04E-02
130GO:0006779: porphyrin-containing compound biosynthetic process1.04E-02
131GO:0010311: lateral root formation1.05E-02
132GO:0009631: cold acclimation1.15E-02
133GO:0006535: cysteine biosynthetic process from serine1.16E-02
134GO:0006032: chitin catabolic process1.16E-02
135GO:0006782: protoporphyrinogen IX biosynthetic process1.16E-02
136GO:0048829: root cap development1.16E-02
137GO:0006949: syncytium formation1.16E-02
138GO:0010215: cellulose microfibril organization1.16E-02
139GO:0045490: pectin catabolic process1.26E-02
140GO:0016051: carbohydrate biosynthetic process1.27E-02
141GO:0016042: lipid catabolic process1.28E-02
142GO:0043085: positive regulation of catalytic activity1.29E-02
143GO:0048765: root hair cell differentiation1.29E-02
144GO:0010152: pollen maturation1.42E-02
145GO:0045037: protein import into chloroplast stroma1.42E-02
146GO:0008361: regulation of cell size1.42E-02
147GO:0030001: metal ion transport1.44E-02
148GO:0010102: lateral root morphogenesis1.55E-02
149GO:0006006: glucose metabolic process1.55E-02
150GO:0030036: actin cytoskeleton organization1.55E-02
151GO:0009718: anthocyanin-containing compound biosynthetic process1.55E-02
152GO:0009926: auxin polar transport1.64E-02
153GO:0010143: cutin biosynthetic process1.69E-02
154GO:0007015: actin filament organization1.69E-02
155GO:0019253: reductive pentose-phosphate cycle1.69E-02
156GO:0010540: basipetal auxin transport1.69E-02
157GO:0010167: response to nitrate1.83E-02
158GO:0010053: root epidermal cell differentiation1.83E-02
159GO:0006636: unsaturated fatty acid biosynthetic process1.98E-02
160GO:0009833: plant-type primary cell wall biogenesis1.98E-02
161GO:0009737: response to abscisic acid2.01E-02
162GO:0000027: ribosomal large subunit assembly2.13E-02
163GO:0019344: cysteine biosynthetic process2.13E-02
164GO:0061077: chaperone-mediated protein folding2.44E-02
165GO:0003333: amino acid transmembrane transport2.44E-02
166GO:0016998: cell wall macromolecule catabolic process2.44E-02
167GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.00E-02
168GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.12E-02
169GO:0009624: response to nematode3.14E-02
170GO:0009416: response to light stimulus3.15E-02
171GO:0042631: cellular response to water deprivation3.29E-02
172GO:0080022: primary root development3.29E-02
173GO:0008033: tRNA processing3.29E-02
174GO:0000413: protein peptidyl-prolyl isomerization3.29E-02
175GO:0009742: brassinosteroid mediated signaling pathway3.33E-02
176GO:0006520: cellular amino acid metabolic process3.48E-02
177GO:0006662: glycerol ether metabolic process3.48E-02
178GO:0010182: sugar mediated signaling pathway3.48E-02
179GO:0048868: pollen tube development3.48E-02
180GO:0015986: ATP synthesis coupled proton transport3.66E-02
181GO:0007018: microtubule-based movement3.66E-02
182GO:0002229: defense response to oomycetes4.04E-02
183GO:0016132: brassinosteroid biosynthetic process4.04E-02
184GO:0032502: developmental process4.23E-02
185GO:0030163: protein catabolic process4.43E-02
186GO:0042744: hydrogen peroxide catabolic process4.47E-02
187GO:0009790: embryo development4.58E-02
188GO:0009639: response to red or far red light4.63E-02
189GO:0009567: double fertilization forming a zygote and endosperm4.63E-02
190GO:0009408: response to heat4.65E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
4GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
5GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
6GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
7GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
8GO:0102245: lupan-3beta,20-diol synthase activity0.00E+00
9GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
10GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
11GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
12GO:0050614: delta24-sterol reductase activity0.00E+00
13GO:0004076: biotin synthase activity0.00E+00
14GO:0019843: rRNA binding4.43E-20
15GO:0003735: structural constituent of ribosome5.86E-12
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.50E-08
17GO:0005528: FK506 binding2.48E-07
18GO:0016851: magnesium chelatase activity3.11E-07
19GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor2.45E-05
20GO:0043023: ribosomal large subunit binding5.35E-05
21GO:0001872: (1->3)-beta-D-glucan binding5.35E-05
22GO:0010011: auxin binding9.42E-05
23GO:0008266: poly(U) RNA binding1.22E-04
24GO:0015250: water channel activity1.23E-04
25GO:0004130: cytochrome-c peroxidase activity2.10E-04
26GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.10E-04
27GO:0051920: peroxiredoxin activity2.83E-04
28GO:0016788: hydrolase activity, acting on ester bonds2.85E-04
29GO:0047807: cytokinin 7-beta-glucosyltransferase activity3.97E-04
30GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.97E-04
31GO:0080062: cytokinin 9-beta-glucosyltransferase activity3.97E-04
32GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity3.97E-04
33GO:0015200: methylammonium transmembrane transporter activity3.97E-04
34GO:0004163: diphosphomevalonate decarboxylase activity3.97E-04
35GO:0045485: omega-6 fatty acid desaturase activity3.97E-04
36GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.97E-04
37GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.97E-04
38GO:0016209: antioxidant activity4.58E-04
39GO:0052689: carboxylic ester hydrolase activity5.31E-04
40GO:0051015: actin filament binding7.77E-04
41GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.60E-04
42GO:0003839: gamma-glutamylcyclotransferase activity8.60E-04
43GO:0003938: IMP dehydrogenase activity8.60E-04
44GO:0030247: polysaccharide binding1.28E-03
45GO:0004565: beta-galactosidase activity1.37E-03
46GO:0042300: beta-amyrin synthase activity1.40E-03
47GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.40E-03
48GO:0080054: low-affinity nitrate transmembrane transporter activity1.40E-03
49GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.40E-03
50GO:0003999: adenine phosphoribosyltransferase activity2.02E-03
51GO:0004550: nucleoside diphosphate kinase activity2.02E-03
52GO:0042299: lupeol synthase activity2.02E-03
53GO:0008097: 5S rRNA binding2.02E-03
54GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.71E-03
55GO:0010328: auxin influx transmembrane transporter activity2.71E-03
56GO:0052793: pectin acetylesterase activity2.71E-03
57GO:0004506: squalene monooxygenase activity2.71E-03
58GO:0043495: protein anchor2.71E-03
59GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.71E-03
60GO:0015204: urea transmembrane transporter activity2.71E-03
61GO:0004659: prenyltransferase activity2.71E-03
62GO:0030570: pectate lyase activity3.10E-03
63GO:0008810: cellulase activity3.10E-03
64GO:0004040: amidase activity3.47E-03
65GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.96E-03
66GO:0016208: AMP binding4.29E-03
67GO:0016688: L-ascorbate peroxidase activity4.29E-03
68GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.29E-03
69GO:0008519: ammonium transmembrane transporter activity4.29E-03
70GO:0004017: adenylate kinase activity5.17E-03
71GO:0015631: tubulin binding5.17E-03
72GO:0004124: cysteine synthase activity5.17E-03
73GO:0019899: enzyme binding6.11E-03
74GO:0004620: phospholipase activity6.11E-03
75GO:0004714: transmembrane receptor protein tyrosine kinase activity7.10E-03
76GO:0016168: chlorophyll binding8.06E-03
77GO:0016829: lyase activity9.25E-03
78GO:0008236: serine-type peptidase activity9.46E-03
79GO:0004252: serine-type endopeptidase activity9.56E-03
80GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.96E-03
81GO:0047617: acyl-CoA hydrolase activity1.04E-02
82GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.15E-02
83GO:0008047: enzyme activator activity1.16E-02
84GO:0015020: glucuronosyltransferase activity1.16E-02
85GO:0004568: chitinase activity1.16E-02
86GO:0015114: phosphate ion transmembrane transporter activity1.55E-02
87GO:0008081: phosphoric diester hydrolase activity1.55E-02
88GO:0010329: auxin efflux transmembrane transporter activity1.55E-02
89GO:0031072: heat shock protein binding1.55E-02
90GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.60E-02
91GO:0051287: NAD binding1.98E-02
92GO:0008289: lipid binding2.20E-02
93GO:0004601: peroxidase activity2.20E-02
94GO:0003690: double-stranded DNA binding2.29E-02
95GO:0003777: microtubule motor activity2.45E-02
96GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.61E-02
97GO:0016760: cellulose synthase (UDP-forming) activity2.77E-02
98GO:0022891: substrate-specific transmembrane transporter activity2.77E-02
99GO:0004650: polygalacturonase activity2.87E-02
100GO:0003756: protein disulfide isomerase activity2.94E-02
101GO:0003727: single-stranded RNA binding2.94E-02
102GO:0008514: organic anion transmembrane transporter activity2.94E-02
103GO:0047134: protein-disulfide reductase activity3.12E-02
104GO:0016746: transferase activity, transferring acyl groups3.24E-02
105GO:0008080: N-acetyltransferase activity3.48E-02
106GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.48E-02
107GO:0050662: coenzyme binding3.66E-02
108GO:0004791: thioredoxin-disulfide reductase activity3.66E-02
109GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.43E-02
110GO:0016791: phosphatase activity4.63E-02
111GO:0016759: cellulose synthase activity4.63E-02
RankGO TermAdjusted P value
1GO:0009930: longitudinal side of cell surface0.00E+00
2GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
3GO:0009507: chloroplast2.15E-34
4GO:0009570: chloroplast stroma1.26E-33
5GO:0009941: chloroplast envelope1.70E-26
6GO:0009535: chloroplast thylakoid membrane5.79E-24
7GO:0009579: thylakoid5.13E-22
8GO:0009534: chloroplast thylakoid5.79E-22
9GO:0009543: chloroplast thylakoid lumen1.91E-15
10GO:0005840: ribosome1.88E-12
11GO:0031977: thylakoid lumen5.71E-12
12GO:0010007: magnesium chelatase complex6.47E-08
13GO:0016020: membrane1.96E-06
14GO:0030095: chloroplast photosystem II4.56E-06
15GO:0005618: cell wall4.19E-05
16GO:0000311: plastid large ribosomal subunit8.34E-05
17GO:0046658: anchored component of plasma membrane1.93E-04
18GO:0009505: plant-type cell wall2.40E-04
19GO:0009533: chloroplast stromal thylakoid3.65E-04
20GO:0042807: central vacuole3.65E-04
21GO:0043674: columella3.97E-04
22GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.97E-04
23GO:0009515: granal stacked thylakoid3.97E-04
24GO:0009547: plastid ribosome3.97E-04
25GO:0031225: anchored component of membrane7.07E-04
26GO:0048046: apoplast7.84E-04
27GO:0030093: chloroplast photosystem I8.60E-04
28GO:0008290: F-actin capping protein complex8.60E-04
29GO:0010319: stromule9.06E-04
30GO:0005884: actin filament1.06E-03
31GO:0009528: plastid inner membrane1.40E-03
32GO:0009897: external side of plasma membrane1.40E-03
33GO:0009509: chromoplast1.40E-03
34GO:0016328: lateral plasma membrane1.40E-03
35GO:0005576: extracellular region1.58E-03
36GO:0015934: large ribosomal subunit1.76E-03
37GO:0032432: actin filament bundle2.02E-03
38GO:0009536: plastid2.15E-03
39GO:0009654: photosystem II oxygen evolving complex2.36E-03
40GO:0042651: thylakoid membrane2.36E-03
41GO:0009527: plastid outer membrane2.71E-03
42GO:0005768: endosome3.18E-03
43GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.29E-03
44GO:0009523: photosystem II4.91E-03
45GO:0019898: extrinsic component of membrane4.91E-03
46GO:0005886: plasma membrane5.26E-03
47GO:0009986: cell surface6.11E-03
48GO:0009295: nucleoid6.78E-03
49GO:0009538: photosystem I reaction center7.10E-03
50GO:0031969: chloroplast membrane7.42E-03
51GO:0005802: trans-Golgi network7.46E-03
52GO:0010287: plastoglobule7.80E-03
53GO:0000326: protein storage vacuole8.15E-03
54GO:0008180: COP9 signalosome9.25E-03
55GO:0005763: mitochondrial small ribosomal subunit9.25E-03
56GO:0032040: small-subunit processome1.42E-02
57GO:0009508: plastid chromosome1.55E-02
58GO:0005887: integral component of plasma membrane2.12E-02
59GO:0015935: small ribosomal subunit2.44E-02
60GO:0009532: plastid stroma2.44E-02
61GO:0005794: Golgi apparatus2.55E-02
62GO:0015629: actin cytoskeleton2.77E-02
63GO:0022626: cytosolic ribosome2.95E-02
64GO:0005871: kinesin complex3.12E-02
65GO:0009706: chloroplast inner membrane3.14E-02
66GO:0009522: photosystem I3.66E-02
67GO:0005778: peroxisomal membrane4.83E-02
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Gene type



Gene DE type