Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G42790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010111: glyoxysome organization0.00E+00
2GO:0070482: response to oxygen levels0.00E+00
3GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
4GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
5GO:0010793: regulation of mRNA export from nucleus0.00E+00
6GO:0016559: peroxisome fission3.18E-05
7GO:0007292: female gamete generation6.91E-05
8GO:1902265: abscisic acid homeostasis6.91E-05
9GO:0035494: SNARE complex disassembly6.91E-05
10GO:0035266: meristem growth6.91E-05
11GO:0050684: regulation of mRNA processing1.66E-04
12GO:0006212: uracil catabolic process1.66E-04
13GO:0007584: response to nutrient1.66E-04
14GO:0051788: response to misfolded protein1.66E-04
15GO:0019483: beta-alanine biosynthetic process1.66E-04
16GO:0009308: amine metabolic process1.66E-04
17GO:0019395: fatty acid oxidation1.66E-04
18GO:0060968: regulation of gene silencing2.81E-04
19GO:0032784: regulation of DNA-templated transcription, elongation2.81E-04
20GO:0030029: actin filament-based process2.81E-04
21GO:2001289: lipid X metabolic process4.06E-04
22GO:0072334: UDP-galactose transmembrane transport4.06E-04
23GO:0006809: nitric oxide biosynthetic process4.06E-04
24GO:0006624: vacuolar protein processing4.06E-04
25GO:0006635: fatty acid beta-oxidation4.85E-04
26GO:0010107: potassium ion import5.42E-04
27GO:0009687: abscisic acid metabolic process5.42E-04
28GO:0043097: pyrimidine nucleoside salvage6.87E-04
29GO:0006090: pyruvate metabolic process6.87E-04
30GO:0048232: male gamete generation8.40E-04
31GO:0043248: proteasome assembly8.40E-04
32GO:0006206: pyrimidine nucleobase metabolic process8.40E-04
33GO:0006014: D-ribose metabolic process8.40E-04
34GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly8.40E-04
35GO:0048827: phyllome development8.40E-04
36GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation8.40E-04
37GO:0019509: L-methionine salvage from methylthioadenosine9.99E-04
38GO:0009395: phospholipid catabolic process1.17E-03
39GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process1.17E-03
40GO:0006333: chromatin assembly or disassembly1.17E-03
41GO:0009723: response to ethylene1.17E-03
42GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.17E-03
43GO:0098869: cellular oxidant detoxification1.17E-03
44GO:0009819: drought recovery1.34E-03
45GO:0010078: maintenance of root meristem identity1.34E-03
46GO:0030968: endoplasmic reticulum unfolded protein response1.53E-03
47GO:0043562: cellular response to nitrogen levels1.53E-03
48GO:0009808: lignin metabolic process1.53E-03
49GO:0009051: pentose-phosphate shunt, oxidative branch1.73E-03
50GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.93E-03
51GO:0008202: steroid metabolic process1.93E-03
52GO:0007064: mitotic sister chromatid cohesion2.14E-03
53GO:0048829: root cap development2.14E-03
54GO:0048367: shoot system development2.32E-03
55GO:0010015: root morphogenesis2.36E-03
56GO:0010105: negative regulation of ethylene-activated signaling pathway2.58E-03
57GO:0000266: mitochondrial fission2.58E-03
58GO:0006829: zinc II ion transport2.82E-03
59GO:0006108: malate metabolic process2.82E-03
60GO:0009933: meristem structural organization3.06E-03
61GO:0007034: vacuolar transport3.06E-03
62GO:0006446: regulation of translational initiation3.06E-03
63GO:0007031: peroxisome organization3.30E-03
64GO:0071732: cellular response to nitric oxide3.30E-03
65GO:0090351: seedling development3.30E-03
66GO:0010030: positive regulation of seed germination3.30E-03
67GO:0009695: jasmonic acid biosynthetic process4.08E-03
68GO:0006825: copper ion transport4.08E-03
69GO:0031408: oxylipin biosynthetic process4.35E-03
70GO:0051260: protein homooligomerization4.35E-03
71GO:0010150: leaf senescence4.62E-03
72GO:0030433: ubiquitin-dependent ERAD pathway4.63E-03
73GO:0007005: mitochondrion organization4.63E-03
74GO:0071369: cellular response to ethylene stimulus4.91E-03
75GO:0009789: positive regulation of abscisic acid-activated signaling pathway5.50E-03
76GO:0010468: regulation of gene expression5.51E-03
77GO:0010118: stomatal movement5.80E-03
78GO:0061025: membrane fusion6.42E-03
79GO:0019252: starch biosynthetic process6.74E-03
80GO:0071281: cellular response to iron ion7.73E-03
81GO:0006914: autophagy8.08E-03
82GO:0001666: response to hypoxia9.13E-03
83GO:0010200: response to chitin9.15E-03
84GO:0016192: vesicle-mediated transport9.31E-03
85GO:0009816: defense response to bacterium, incompatible interaction9.50E-03
86GO:0006950: response to stress1.02E-02
87GO:0045892: negative regulation of transcription, DNA-templated1.08E-02
88GO:0010311: lateral root formation1.14E-02
89GO:0006499: N-terminal protein myristoylation1.18E-02
90GO:0010119: regulation of stomatal movement1.22E-02
91GO:0009751: response to salicylic acid1.29E-02
92GO:0045087: innate immune response1.30E-02
93GO:0048364: root development1.37E-02
94GO:0030001: metal ion transport1.43E-02
95GO:0042542: response to hydrogen peroxide1.51E-02
96GO:0009636: response to toxic substance1.69E-02
97GO:0009965: leaf morphogenesis1.69E-02
98GO:0009873: ethylene-activated signaling pathway1.69E-02
99GO:0000165: MAPK cascade1.78E-02
100GO:0046686: response to cadmium ion1.84E-02
101GO:0051603: proteolysis involved in cellular protein catabolic process1.97E-02
102GO:0009626: plant-type hypersensitive response2.27E-02
103GO:0009611: response to wounding2.38E-02
104GO:0035556: intracellular signal transduction2.46E-02
105GO:0009742: brassinosteroid mediated signaling pathway2.58E-02
106GO:0055114: oxidation-reduction process2.80E-02
107GO:0009058: biosynthetic process3.01E-02
108GO:0009790: embryo development3.24E-02
109GO:0016310: phosphorylation3.25E-02
110GO:0006413: translational initiation3.47E-02
111GO:0007623: circadian rhythm3.65E-02
112GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.95E-02
113GO:0008380: RNA splicing4.14E-02
114GO:0006508: proteolysis4.28E-02
115GO:0006979: response to oxidative stress4.73E-02
116GO:0009826: unidimensional cell growth4.84E-02
RankGO TermAdjusted P value
1GO:0008901: ferredoxin hydrogenase activity0.00E+00
2GO:0017113: dihydropyrimidine dehydrogenase (NADP+) activity0.00E+00
3GO:0046522: S-methyl-5-thioribose kinase activity0.00E+00
4GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity6.91E-05
5GO:0004112: cyclic-nucleotide phosphodiesterase activity6.91E-05
6GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity6.91E-05
7GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity6.91E-05
8GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity6.91E-05
9GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity6.91E-05
10GO:0052595: aliphatic-amine oxidase activity6.91E-05
11GO:0003988: acetyl-CoA C-acyltransferase activity1.66E-04
12GO:0047209: coniferyl-alcohol glucosyltransferase activity1.66E-04
13GO:0004566: beta-glucuronidase activity1.66E-04
14GO:0019829: cation-transporting ATPase activity2.81E-04
15GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity2.81E-04
16GO:0005483: soluble NSF attachment protein activity2.81E-04
17GO:0030527: structural constituent of chromatin4.06E-04
18GO:0004300: enoyl-CoA hydratase activity4.06E-04
19GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity5.42E-04
20GO:0004470: malic enzyme activity5.42E-04
21GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor5.42E-04
22GO:0004737: pyruvate decarboxylase activity5.42E-04
23GO:0019905: syntaxin binding5.42E-04
24GO:0010294: abscisic acid glucosyltransferase activity6.87E-04
25GO:0005459: UDP-galactose transmembrane transporter activity6.87E-04
26GO:0008948: oxaloacetate decarboxylase activity6.87E-04
27GO:0042802: identical protein binding7.68E-04
28GO:0036402: proteasome-activating ATPase activity8.40E-04
29GO:0030976: thiamine pyrophosphate binding8.40E-04
30GO:0004747: ribokinase activity9.99E-04
31GO:0004849: uridine kinase activity9.99E-04
32GO:0004602: glutathione peroxidase activity9.99E-04
33GO:0016831: carboxy-lyase activity1.17E-03
34GO:0008865: fructokinase activity1.34E-03
35GO:0008142: oxysterol binding1.53E-03
36GO:0005267: potassium channel activity1.53E-03
37GO:0005375: copper ion transmembrane transporter activity1.53E-03
38GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors1.73E-03
39GO:0004177: aminopeptidase activity2.36E-03
40GO:0080044: quercetin 7-O-glucosyltransferase activity2.46E-03
41GO:0080043: quercetin 3-O-glucosyltransferase activity2.46E-03
42GO:0004521: endoribonuclease activity2.58E-03
43GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.82E-03
44GO:0004175: endopeptidase activity3.06E-03
45GO:0008131: primary amine oxidase activity3.06E-03
46GO:0017025: TBP-class protein binding3.30E-03
47GO:0043424: protein histidine kinase binding4.08E-03
48GO:0004707: MAP kinase activity4.35E-03
49GO:0016779: nucleotidyltransferase activity4.63E-03
50GO:0008194: UDP-glycosyltransferase activity5.16E-03
51GO:0046873: metal ion transmembrane transporter activity6.11E-03
52GO:0048038: quinone binding7.07E-03
53GO:0004197: cysteine-type endopeptidase activity7.40E-03
54GO:0003682: chromatin binding7.54E-03
55GO:0016301: kinase activity7.97E-03
56GO:0005200: structural constituent of cytoskeleton8.42E-03
57GO:0003993: acid phosphatase activity1.34E-02
58GO:0051539: 4 iron, 4 sulfur cluster binding1.43E-02
59GO:0051287: NAD binding1.78E-02
60GO:0005524: ATP binding2.37E-02
61GO:0015144: carbohydrate transmembrane transporter activity3.30E-02
62GO:0005507: copper ion binding3.31E-02
63GO:0005351: sugar:proton symporter activity3.59E-02
64GO:0003743: translation initiation factor activity4.07E-02
65GO:0005515: protein binding4.83E-02
66GO:0000287: magnesium ion binding4.91E-02
RankGO TermAdjusted P value
1GO:0032777: Piccolo NuA4 histone acetyltransferase complex1.66E-04
2GO:0042406: extrinsic component of endoplasmic reticulum membrane2.81E-04
3GO:0000323: lytic vacuole4.06E-04
4GO:0005778: peroxisomal membrane6.19E-04
5GO:0005777: peroxisome9.34E-04
6GO:0031597: cytosolic proteasome complex9.99E-04
7GO:0000815: ESCRT III complex9.99E-04
8GO:0030173: integral component of Golgi membrane9.99E-04
9GO:0031595: nuclear proteasome complex1.17E-03
10GO:0009514: glyoxysome1.53E-03
11GO:0005779: integral component of peroxisomal membrane1.53E-03
12GO:0005829: cytosol1.60E-03
13GO:0016604: nuclear body1.93E-03
14GO:0008540: proteasome regulatory particle, base subcomplex1.93E-03
15GO:0043231: intracellular membrane-bounded organelle2.35E-03
16GO:0005765: lysosomal membrane2.36E-03
17GO:0005886: plasma membrane3.00E-03
18GO:0030176: integral component of endoplasmic reticulum membrane3.30E-03
19GO:0005741: mitochondrial outer membrane4.35E-03
20GO:0000785: chromatin7.40E-03
21GO:0005768: endosome9.17E-03
22GO:0005783: endoplasmic reticulum1.32E-02
23GO:0005774: vacuolar membrane1.44E-02
24GO:0031201: SNARE complex1.47E-02
25GO:0000502: proteasome complex1.92E-02
26GO:0005773: vacuole2.71E-02
27GO:0005623: cell2.96E-02
28GO:0005802: trans-Golgi network3.72E-02
29GO:0016020: membrane3.89E-02
30GO:0009507: chloroplast4.46E-02
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Gene type



Gene DE type