Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G42770

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042821: pyridoxal biosynthetic process0.00E+00
2GO:0005996: monosaccharide metabolic process0.00E+00
3GO:0007638: mechanosensory behavior0.00E+00
4GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
5GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0090042: tubulin deacetylation0.00E+00
8GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
9GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
10GO:0061635: regulation of protein complex stability0.00E+00
11GO:0006223: uracil salvage0.00E+00
12GO:0015979: photosynthesis3.31E-13
13GO:0009773: photosynthetic electron transport in photosystem I7.00E-13
14GO:0009735: response to cytokinin9.51E-08
15GO:0006412: translation2.07E-07
16GO:0030388: fructose 1,6-bisphosphate metabolic process4.28E-06
17GO:0018298: protein-chromophore linkage6.28E-06
18GO:0032544: plastid translation1.20E-05
19GO:0042254: ribosome biogenesis1.49E-05
20GO:0006000: fructose metabolic process1.52E-05
21GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.40E-05
22GO:0006546: glycine catabolic process6.10E-05
23GO:0010027: thylakoid membrane organization6.13E-05
24GO:0016123: xanthophyll biosynthetic process9.62E-05
25GO:0006810: transport1.13E-04
26GO:0009658: chloroplast organization1.14E-04
27GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.39E-04
28GO:0010196: nonphotochemical quenching2.48E-04
29GO:0016117: carotenoid biosynthetic process2.49E-04
30GO:1904966: positive regulation of vitamin E biosynthetic process3.07E-04
31GO:1904964: positive regulation of phytol biosynthetic process3.07E-04
32GO:1902458: positive regulation of stomatal opening3.07E-04
33GO:0071588: hydrogen peroxide mediated signaling pathway3.07E-04
34GO:0009443: pyridoxal 5'-phosphate salvage3.07E-04
35GO:0006002: fructose 6-phosphate metabolic process3.84E-04
36GO:0034755: iron ion transmembrane transport6.71E-04
37GO:0097054: L-glutamate biosynthetic process6.71E-04
38GO:0006729: tetrahydrobiopterin biosynthetic process6.71E-04
39GO:1903426: regulation of reactive oxygen species biosynthetic process6.71E-04
40GO:1902326: positive regulation of chlorophyll biosynthetic process6.71E-04
41GO:0043085: positive regulation of catalytic activity7.36E-04
42GO:0055114: oxidation-reduction process7.50E-04
43GO:0045037: protein import into chloroplast stroma8.40E-04
44GO:0006094: gluconeogenesis9.50E-04
45GO:0005986: sucrose biosynthetic process9.50E-04
46GO:0010020: chloroplast fission1.07E-03
47GO:0019253: reductive pentose-phosphate cycle1.07E-03
48GO:0010207: photosystem II assembly1.07E-03
49GO:0006518: peptide metabolic process1.09E-03
50GO:0071492: cellular response to UV-A1.09E-03
51GO:0006696: ergosterol biosynthetic process1.09E-03
52GO:2001295: malonyl-CoA biosynthetic process1.09E-03
53GO:0090506: axillary shoot meristem initiation1.09E-03
54GO:0009853: photorespiration1.22E-03
55GO:0045454: cell redox homeostasis1.27E-03
56GO:0034599: cellular response to oxidative stress1.29E-03
57GO:0006633: fatty acid biosynthetic process1.32E-03
58GO:0006636: unsaturated fatty acid biosynthetic process1.33E-03
59GO:0010731: protein glutathionylation1.56E-03
60GO:0006424: glutamyl-tRNA aminoacylation1.56E-03
61GO:0043572: plastid fission1.56E-03
62GO:0007231: osmosensory signaling pathway1.56E-03
63GO:0006537: glutamate biosynthetic process1.56E-03
64GO:0009768: photosynthesis, light harvesting in photosystem I1.62E-03
65GO:0061077: chaperone-mediated protein folding1.78E-03
66GO:0009644: response to high light intensity1.86E-03
67GO:0044206: UMP salvage2.09E-03
68GO:0010037: response to carbon dioxide2.09E-03
69GO:0006808: regulation of nitrogen utilization2.09E-03
70GO:0019676: ammonia assimilation cycle2.09E-03
71GO:0015976: carbon utilization2.09E-03
72GO:0071486: cellular response to high light intensity2.09E-03
73GO:0019464: glycine decarboxylation via glycine cleavage system2.09E-03
74GO:0009765: photosynthesis, light harvesting2.09E-03
75GO:0045727: positive regulation of translation2.09E-03
76GO:2000122: negative regulation of stomatal complex development2.09E-03
77GO:0033500: carbohydrate homeostasis2.09E-03
78GO:0016120: carotene biosynthetic process2.67E-03
79GO:0032543: mitochondrial translation2.67E-03
80GO:0006656: phosphatidylcholine biosynthetic process2.67E-03
81GO:0006564: L-serine biosynthetic process2.67E-03
82GO:0043097: pyrimidine nucleoside salvage2.67E-03
83GO:0010236: plastoquinone biosynthetic process2.67E-03
84GO:0045038: protein import into chloroplast thylakoid membrane2.67E-03
85GO:0006461: protein complex assembly2.67E-03
86GO:0000413: protein peptidyl-prolyl isomerization2.70E-03
87GO:0010087: phloem or xylem histogenesis2.70E-03
88GO:0006662: glycerol ether metabolic process2.91E-03
89GO:0010190: cytochrome b6f complex assembly3.30E-03
90GO:0006206: pyrimidine nucleobase metabolic process3.30E-03
91GO:0006596: polyamine biosynthetic process3.30E-03
92GO:0032973: amino acid export3.30E-03
93GO:0006014: D-ribose metabolic process3.30E-03
94GO:0048759: xylem vessel member cell differentiation3.30E-03
95GO:0019252: starch biosynthetic process3.35E-03
96GO:1901259: chloroplast rRNA processing3.97E-03
97GO:0010189: vitamin E biosynthetic process3.97E-03
98GO:0009854: oxidative photosynthetic carbon pathway3.97E-03
99GO:0010019: chloroplast-nucleus signaling pathway3.97E-03
100GO:0010555: response to mannitol3.97E-03
101GO:0009955: adaxial/abaxial pattern specification3.97E-03
102GO:0010067: procambium histogenesis3.97E-03
103GO:0009645: response to low light intensity stimulus4.68E-03
104GO:0006400: tRNA modification4.68E-03
105GO:0009395: phospholipid catabolic process4.68E-03
106GO:0043090: amino acid import4.68E-03
107GO:0006605: protein targeting5.44E-03
108GO:0006875: cellular metal ion homeostasis5.44E-03
109GO:2000070: regulation of response to water deprivation5.44E-03
110GO:0009819: drought recovery5.44E-03
111GO:0009642: response to light intensity5.44E-03
112GO:0042742: defense response to bacterium5.54E-03
113GO:0009657: plastid organization6.23E-03
114GO:0017004: cytochrome complex assembly6.23E-03
115GO:0015996: chlorophyll catabolic process6.23E-03
116GO:0007186: G-protein coupled receptor signaling pathway6.23E-03
117GO:0010206: photosystem II repair7.07E-03
118GO:0080144: amino acid homeostasis7.07E-03
119GO:0090305: nucleic acid phosphodiester bond hydrolysis7.07E-03
120GO:0010205: photoinhibition7.94E-03
121GO:0006779: porphyrin-containing compound biosynthetic process7.94E-03
122GO:0016051: carbohydrate biosynthetic process8.59E-03
123GO:0006782: protoporphyrinogen IX biosynthetic process8.84E-03
124GO:0019538: protein metabolic process8.84E-03
125GO:0006879: cellular iron ion homeostasis9.79E-03
126GO:0000272: polysaccharide catabolic process9.79E-03
127GO:0018119: peptidyl-cysteine S-nitrosylation9.79E-03
128GO:0006816: calcium ion transport9.79E-03
129GO:0019684: photosynthesis, light reaction9.79E-03
130GO:0009089: lysine biosynthetic process via diaminopimelate9.79E-03
131GO:0009409: response to cold1.00E-02
132GO:0009767: photosynthetic electron transport chain1.18E-02
133GO:0010223: secondary shoot formation1.28E-02
134GO:0005985: sucrose metabolic process1.39E-02
135GO:0090351: seedling development1.39E-02
136GO:0070588: calcium ion transmembrane transport1.39E-02
137GO:0019344: cysteine biosynthetic process1.62E-02
138GO:0009116: nucleoside metabolic process1.62E-02
139GO:0000027: ribosomal large subunit assembly1.62E-02
140GO:0016575: histone deacetylation1.74E-02
141GO:0016114: terpenoid biosynthetic process1.86E-02
142GO:0006730: one-carbon metabolic process1.98E-02
143GO:0016226: iron-sulfur cluster assembly1.98E-02
144GO:0001944: vasculature development2.11E-02
145GO:0009561: megagametogenesis2.24E-02
146GO:0009306: protein secretion2.24E-02
147GO:0010089: xylem development2.24E-02
148GO:0042631: cellular response to water deprivation2.50E-02
149GO:0055085: transmembrane transport2.54E-02
150GO:0006457: protein folding2.61E-02
151GO:0010182: sugar mediated signaling pathway2.64E-02
152GO:0032259: methylation2.74E-02
153GO:0015986: ATP synthesis coupled proton transport2.78E-02
154GO:0009791: post-embryonic development2.92E-02
155GO:0000302: response to reactive oxygen species3.07E-02
156GO:0032502: developmental process3.21E-02
157GO:0007264: small GTPase mediated signal transduction3.21E-02
158GO:1901657: glycosyl compound metabolic process3.36E-02
159GO:0006413: translational initiation3.45E-02
160GO:0007623: circadian rhythm3.69E-02
161GO:0015995: chlorophyll biosynthetic process4.48E-02
162GO:0006508: proteolysis4.64E-02
163GO:0009817: defense response to fungus, incompatible interaction4.81E-02
164GO:0000160: phosphorelay signal transduction system4.98E-02
RankGO TermAdjusted P value
1GO:0008887: glycerate kinase activity0.00E+00
2GO:0051721: protein phosphatase 2A binding0.00E+00
3GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
4GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
5GO:0042903: tubulin deacetylase activity0.00E+00
6GO:0010487: thermospermine synthase activity0.00E+00
7GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0043014: alpha-tubulin binding0.00E+00
10GO:0046905: phytoene synthase activity0.00E+00
11GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
12GO:0051738: xanthophyll binding0.00E+00
13GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
14GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
15GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
16GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
17GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
18GO:0019843: rRNA binding4.77E-15
19GO:0003735: structural constituent of ribosome1.01E-08
20GO:0016168: chlorophyll binding1.26E-07
21GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.28E-06
22GO:0004033: aldo-keto reductase (NADP) activity8.33E-06
23GO:0022891: substrate-specific transmembrane transporter activity9.73E-06
24GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.10E-05
25GO:0031072: heat shock protein binding5.74E-05
26GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor6.10E-05
27GO:0051920: peroxiredoxin activity1.90E-04
28GO:0051996: squalene synthase activity3.07E-04
29GO:0045485: omega-6 fatty acid desaturase activity3.07E-04
30GO:0016768: spermine synthase activity3.07E-04
31GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.07E-04
32GO:0005080: protein kinase C binding3.07E-04
33GO:0015088: copper uptake transmembrane transporter activity3.07E-04
34GO:0016041: glutamate synthase (ferredoxin) activity3.07E-04
35GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.07E-04
36GO:0016209: antioxidant activity3.13E-04
37GO:0005381: iron ion transmembrane transporter activity5.47E-04
38GO:0008047: enzyme activator activity6.38E-04
39GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.71E-04
40GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.71E-04
41GO:0008967: phosphoglycolate phosphatase activity6.71E-04
42GO:0000234: phosphoethanolamine N-methyltransferase activity6.71E-04
43GO:0010291: carotene beta-ring hydroxylase activity6.71E-04
44GO:0042389: omega-3 fatty acid desaturase activity6.71E-04
45GO:0010297: heteropolysaccharide binding6.71E-04
46GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.71E-04
47GO:0004617: phosphoglycerate dehydrogenase activity6.71E-04
48GO:0004047: aminomethyltransferase activity6.71E-04
49GO:0004222: metalloendopeptidase activity1.03E-03
50GO:0004148: dihydrolipoyl dehydrogenase activity1.09E-03
51GO:0004075: biotin carboxylase activity1.09E-03
52GO:0045174: glutathione dehydrogenase (ascorbate) activity1.09E-03
53GO:0070402: NADPH binding1.09E-03
54GO:0017150: tRNA dihydrouridine synthase activity1.09E-03
55GO:0003913: DNA photolyase activity1.09E-03
56GO:0031409: pigment binding1.33E-03
57GO:0005528: FK506 binding1.47E-03
58GO:0048487: beta-tubulin binding1.56E-03
59GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.56E-03
60GO:0004375: glycine dehydrogenase (decarboxylating) activity1.56E-03
61GO:0004176: ATP-dependent peptidase activity1.78E-03
62GO:0043495: protein anchor2.09E-03
63GO:0004659: prenyltransferase activity2.09E-03
64GO:0004845: uracil phosphoribosyltransferase activity2.09E-03
65GO:1990137: plant seed peroxidase activity2.09E-03
66GO:0047134: protein-disulfide reductase activity2.50E-03
67GO:0016773: phosphotransferase activity, alcohol group as acceptor2.67E-03
68GO:0004040: amidase activity2.67E-03
69GO:0051538: 3 iron, 4 sulfur cluster binding2.67E-03
70GO:0003989: acetyl-CoA carboxylase activity2.67E-03
71GO:0004791: thioredoxin-disulfide reductase activity3.13E-03
72GO:0004130: cytochrome-c peroxidase activity3.30E-03
73GO:0042578: phosphoric ester hydrolase activity3.30E-03
74GO:0016688: L-ascorbate peroxidase activity3.30E-03
75GO:0048038: quinone binding3.59E-03
76GO:0051082: unfolded protein binding3.85E-03
77GO:0004747: ribokinase activity3.97E-03
78GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.97E-03
79GO:0004849: uridine kinase activity3.97E-03
80GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.09E-03
81GO:0008237: metallopeptidase activity4.62E-03
82GO:0019899: enzyme binding4.68E-03
83GO:0009881: photoreceptor activity4.68E-03
84GO:0005509: calcium ion binding4.72E-03
85GO:0008865: fructokinase activity5.44E-03
86GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.23E-03
87GO:0008135: translation factor activity, RNA binding6.23E-03
88GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.23E-03
89GO:0015078: hydrogen ion transmembrane transporter activity6.23E-03
90GO:0015386: potassium:proton antiporter activity9.79E-03
91GO:0004364: glutathione transferase activity1.07E-02
92GO:0004022: alcohol dehydrogenase (NAD) activity1.18E-02
93GO:0004089: carbonate dehydratase activity1.18E-02
94GO:0005262: calcium channel activity1.18E-02
95GO:0008266: poly(U) RNA binding1.28E-02
96GO:0051536: iron-sulfur cluster binding1.62E-02
97GO:0004407: histone deacetylase activity1.62E-02
98GO:0015079: potassium ion transmembrane transporter activity1.74E-02
99GO:0043424: protein histidine kinase binding1.74E-02
100GO:0033612: receptor serine/threonine kinase binding1.86E-02
101GO:0046872: metal ion binding2.10E-02
102GO:0015035: protein disulfide oxidoreductase activity2.20E-02
103GO:0005102: receptor binding2.37E-02
104GO:0008080: N-acetyltransferase activity2.64E-02
105GO:0016491: oxidoreductase activity2.73E-02
106GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.75E-02
107GO:0050662: coenzyme binding2.78E-02
108GO:0003924: GTPase activity2.89E-02
109GO:0004518: nuclease activity3.21E-02
110GO:0000156: phosphorelay response regulator activity3.36E-02
111GO:0016759: cellulose synthase activity3.52E-02
112GO:0008483: transaminase activity3.67E-02
113GO:0016722: oxidoreductase activity, oxidizing metal ions3.67E-02
114GO:0005525: GTP binding3.70E-02
115GO:0016597: amino acid binding3.83E-02
116GO:0003743: translation initiation factor activity4.31E-02
117GO:0102483: scopolin beta-glucosidase activity4.48E-02
118GO:0008236: serine-type peptidase activity4.64E-02
119GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.64E-02
120GO:0042802: identical protein binding4.68E-02
121GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.81E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0009507: chloroplast1.63E-98
4GO:0009570: chloroplast stroma5.59E-48
5GO:0009535: chloroplast thylakoid membrane1.68E-45
6GO:0009941: chloroplast envelope1.31E-43
7GO:0009579: thylakoid1.14E-22
8GO:0009543: chloroplast thylakoid lumen3.38E-18
9GO:0009534: chloroplast thylakoid4.25E-16
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.18E-14
11GO:0031977: thylakoid lumen8.22E-13
12GO:0005840: ribosome1.13E-09
13GO:0009654: photosystem II oxygen evolving complex1.92E-09
14GO:0009523: photosystem II9.52E-07
15GO:0019898: extrinsic component of membrane9.52E-07
16GO:0030095: chloroplast photosystem II1.99E-06
17GO:0042651: thylakoid membrane5.32E-06
18GO:0009706: chloroplast inner membrane8.40E-06
19GO:0010287: plastoglobule1.37E-05
20GO:0031969: chloroplast membrane2.73E-05
21GO:0000311: plastid large ribosomal subunit4.68E-05
22GO:0010319: stromule4.89E-05
23GO:0015934: large ribosomal subunit1.31E-04
24GO:0009532: plastid stroma1.53E-04
25GO:0048046: apoplast2.13E-04
26GO:0009533: chloroplast stromal thylakoid2.48E-04
27GO:0009344: nitrite reductase complex [NAD(P)H]3.07E-04
28GO:0009547: plastid ribosome3.07E-04
29GO:0009782: photosystem I antenna complex3.07E-04
30GO:0042170: plastid membrane6.71E-04
31GO:0000427: plastid-encoded plastid RNA polymerase complex6.71E-04
32GO:0009528: plastid inner membrane1.09E-03
33GO:0030076: light-harvesting complex1.19E-03
34GO:0022626: cytosolic ribosome1.26E-03
35GO:0005960: glycine cleavage complex1.56E-03
36GO:0015935: small ribosomal subunit1.78E-03
37GO:0009517: PSII associated light-harvesting complex II2.09E-03
38GO:0031897: Tic complex2.09E-03
39GO:0009527: plastid outer membrane2.09E-03
40GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.30E-03
41GO:0016020: membrane4.23E-03
42GO:0009539: photosystem II reaction center6.23E-03
43GO:0005811: lipid particle6.23E-03
44GO:0005763: mitochondrial small ribosomal subunit7.07E-03
45GO:0009536: plastid2.42E-02
46GO:0009522: photosystem I2.78E-02
47GO:0005759: mitochondrial matrix3.36E-02
48GO:0009707: chloroplast outer membrane4.81E-02
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Gene type



Gene DE type