Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G42360

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043201: response to leucine0.00E+00
2GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
3GO:0046109: uridine biosynthetic process0.00E+00
4GO:0080053: response to phenylalanine0.00E+00
5GO:0080052: response to histidine0.00E+00
6GO:0046865: terpenoid transport0.00E+00
7GO:0006793: phosphorus metabolic process0.00E+00
8GO:0051238: sequestering of metal ion0.00E+00
9GO:0006182: cGMP biosynthetic process0.00E+00
10GO:0006592: ornithine biosynthetic process0.00E+00
11GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
12GO:0010055: atrichoblast differentiation0.00E+00
13GO:0009617: response to bacterium5.82E-08
14GO:0009620: response to fungus3.38E-07
15GO:0042742: defense response to bacterium8.34E-07
16GO:0006874: cellular calcium ion homeostasis8.81E-07
17GO:0006468: protein phosphorylation3.01E-06
18GO:0006952: defense response3.84E-06
19GO:0002238: response to molecule of fungal origin7.29E-06
20GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response1.24E-05
21GO:0071456: cellular response to hypoxia3.67E-05
22GO:0010120: camalexin biosynthetic process4.05E-05
23GO:0010200: response to chitin4.32E-05
24GO:0006032: chitin catabolic process9.27E-05
25GO:0009751: response to salicylic acid1.23E-04
26GO:0006536: glutamate metabolic process1.41E-04
27GO:0009817: defense response to fungus, incompatible interaction3.59E-04
28GO:0016998: cell wall macromolecule catabolic process4.21E-04
29GO:0099132: ATP hydrolysis coupled cation transmembrane transport5.06E-04
30GO:0010726: positive regulation of hydrogen peroxide metabolic process5.06E-04
31GO:0010421: hydrogen peroxide-mediated programmed cell death5.06E-04
32GO:1901183: positive regulation of camalexin biosynthetic process5.06E-04
33GO:0032491: detection of molecule of fungal origin5.06E-04
34GO:0042759: long-chain fatty acid biosynthetic process5.06E-04
35GO:0032107: regulation of response to nutrient levels5.06E-04
36GO:0048455: stamen formation5.06E-04
37GO:0046167: glycerol-3-phosphate biosynthetic process5.06E-04
38GO:0051938: L-glutamate import5.06E-04
39GO:0030091: protein repair6.54E-04
40GO:0010204: defense response signaling pathway, resistance gene-independent7.96E-04
41GO:0009636: response to toxic substance9.23E-04
42GO:0009056: catabolic process9.51E-04
43GO:0006855: drug transmembrane transport9.78E-04
44GO:0009866: induced systemic resistance, ethylene mediated signaling pathway1.09E-03
45GO:0002240: response to molecule of oomycetes origin1.09E-03
46GO:0051788: response to misfolded protein1.09E-03
47GO:0044419: interspecies interaction between organisms1.09E-03
48GO:0043066: negative regulation of apoptotic process1.09E-03
49GO:0042939: tripeptide transport1.09E-03
50GO:0030003: cellular cation homeostasis1.09E-03
51GO:0042325: regulation of phosphorylation1.09E-03
52GO:0043091: L-arginine import1.09E-03
53GO:0051592: response to calcium ion1.09E-03
54GO:0080183: response to photooxidative stress1.09E-03
55GO:0015802: basic amino acid transport1.09E-03
56GO:0009805: coumarin biosynthetic process1.09E-03
57GO:0006641: triglyceride metabolic process1.09E-03
58GO:0010150: leaf senescence1.10E-03
59GO:0007165: signal transduction1.14E-03
60GO:0009688: abscisic acid biosynthetic process1.31E-03
61GO:0050832: defense response to fungus1.33E-03
62GO:0009682: induced systemic resistance1.51E-03
63GO:0000272: polysaccharide catabolic process1.51E-03
64GO:0006790: sulfur compound metabolic process1.73E-03
65GO:0012501: programmed cell death1.73E-03
66GO:0080168: abscisic acid transport1.78E-03
67GO:0019563: glycerol catabolic process1.78E-03
68GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.78E-03
69GO:0034051: negative regulation of plant-type hypersensitive response1.78E-03
70GO:0006556: S-adenosylmethionine biosynthetic process1.78E-03
71GO:0010351: lithium ion transport1.78E-03
72GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1.78E-03
73GO:0015692: lead ion transport1.78E-03
74GO:0032259: methylation1.80E-03
75GO:0002237: response to molecule of bacterial origin2.22E-03
76GO:0046854: phosphatidylinositol phosphorylation2.49E-03
77GO:0006072: glycerol-3-phosphate metabolic process2.58E-03
78GO:0030100: regulation of endocytosis2.58E-03
79GO:0009052: pentose-phosphate shunt, non-oxidative branch2.58E-03
80GO:0006882: cellular zinc ion homeostasis2.58E-03
81GO:0046513: ceramide biosynthetic process2.58E-03
82GO:0046836: glycolipid transport2.58E-03
83GO:0019438: aromatic compound biosynthetic process2.58E-03
84GO:0033169: histone H3-K9 demethylation2.58E-03
85GO:0070301: cellular response to hydrogen peroxide2.58E-03
86GO:0009407: toxin catabolic process2.64E-03
87GO:0033358: UDP-L-arabinose biosynthetic process3.48E-03
88GO:1901002: positive regulation of response to salt stress3.48E-03
89GO:0010188: response to microbial phytotoxin3.48E-03
90GO:0042938: dipeptide transport3.48E-03
91GO:0045227: capsule polysaccharide biosynthetic process3.48E-03
92GO:0003333: amino acid transmembrane transport3.74E-03
93GO:0000304: response to singlet oxygen4.46E-03
94GO:0034052: positive regulation of plant-type hypersensitive response4.46E-03
95GO:0006561: proline biosynthetic process5.53E-03
96GO:0010942: positive regulation of cell death5.53E-03
97GO:0015691: cadmium ion transport5.53E-03
98GO:0010256: endomembrane system organization5.53E-03
99GO:0006555: methionine metabolic process5.53E-03
100GO:0043248: proteasome assembly5.53E-03
101GO:0007166: cell surface receptor signaling pathway5.92E-03
102GO:0055114: oxidation-reduction process6.22E-03
103GO:0009809: lignin biosynthetic process6.40E-03
104GO:0010555: response to mannitol6.67E-03
105GO:2000067: regulation of root morphogenesis6.67E-03
106GO:0019509: L-methionine salvage from methylthioadenosine6.67E-03
107GO:0002229: defense response to oomycetes7.60E-03
108GO:0010193: response to ozone7.60E-03
109GO:0009753: response to jasmonic acid7.83E-03
110GO:0019745: pentacyclic triterpenoid biosynthetic process7.90E-03
111GO:0030026: cellular manganese ion homeostasis7.90E-03
112GO:1900057: positive regulation of leaf senescence7.90E-03
113GO:0000122: negative regulation of transcription from RNA polymerase II promoter7.90E-03
114GO:0050829: defense response to Gram-negative bacterium7.90E-03
115GO:0080027: response to herbivore7.90E-03
116GO:0048528: post-embryonic root development7.90E-03
117GO:1900056: negative regulation of leaf senescence7.90E-03
118GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline9.20E-03
119GO:0009642: response to light intensity9.20E-03
120GO:1900150: regulation of defense response to fungus9.20E-03
121GO:0009850: auxin metabolic process9.20E-03
122GO:0043068: positive regulation of programmed cell death9.20E-03
123GO:0010252: auxin homeostasis9.24E-03
124GO:0051607: defense response to virus1.04E-02
125GO:0007186: G-protein coupled receptor signaling pathway1.06E-02
126GO:0010497: plasmodesmata-mediated intercellular transport1.06E-02
127GO:0006526: arginine biosynthetic process1.06E-02
128GO:0009699: phenylpropanoid biosynthetic process1.06E-02
129GO:0009615: response to virus1.10E-02
130GO:0009723: response to ethylene1.17E-02
131GO:0009821: alkaloid biosynthetic process1.20E-02
132GO:0051865: protein autoubiquitination1.20E-02
133GO:0010112: regulation of systemic acquired resistance1.20E-02
134GO:0009627: systemic acquired resistance1.24E-02
135GO:0080167: response to karrikin1.30E-02
136GO:2000280: regulation of root development1.35E-02
137GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.35E-02
138GO:0008219: cell death1.45E-02
139GO:0055062: phosphate ion homeostasis1.51E-02
140GO:0007064: mitotic sister chromatid cohesion1.51E-02
141GO:0009870: defense response signaling pathway, resistance gene-dependent1.51E-02
142GO:0010162: seed dormancy process1.51E-02
143GO:0006816: calcium ion transport1.67E-02
144GO:0048527: lateral root development1.67E-02
145GO:0009089: lysine biosynthetic process via diaminopimelate1.67E-02
146GO:0009073: aromatic amino acid family biosynthetic process1.67E-02
147GO:0009750: response to fructose1.67E-02
148GO:0002213: defense response to insect1.84E-02
149GO:0009611: response to wounding1.94E-02
150GO:0006626: protein targeting to mitochondrion2.02E-02
151GO:0055046: microgametogenesis2.02E-02
152GO:0009718: anthocyanin-containing compound biosynthetic process2.02E-02
153GO:0006631: fatty acid metabolic process2.19E-02
154GO:0010143: cutin biosynthetic process2.20E-02
155GO:0016042: lipid catabolic process2.23E-02
156GO:0009744: response to sucrose2.37E-02
157GO:0051707: response to other organism2.37E-02
158GO:0070588: calcium ion transmembrane transport2.38E-02
159GO:0009969: xyloglucan biosynthetic process2.38E-02
160GO:0009225: nucleotide-sugar metabolic process2.38E-02
161GO:0006979: response to oxidative stress2.42E-02
162GO:0010025: wax biosynthetic process2.58E-02
163GO:0009863: salicylic acid mediated signaling pathway2.77E-02
164GO:0080147: root hair cell development2.77E-02
165GO:0030150: protein import into mitochondrial matrix2.77E-02
166GO:0005992: trehalose biosynthetic process2.77E-02
167GO:0009695: jasmonic acid biosynthetic process2.98E-02
168GO:0006812: cation transport2.98E-02
169GO:0042538: hyperosmotic salinity response2.98E-02
170GO:0031408: oxylipin biosynthetic process3.18E-02
171GO:0009814: defense response, incompatible interaction3.40E-02
172GO:0006730: one-carbon metabolic process3.40E-02
173GO:0019748: secondary metabolic process3.40E-02
174GO:0009693: ethylene biosynthetic process3.61E-02
175GO:0010227: floral organ abscission3.61E-02
176GO:0006012: galactose metabolic process3.61E-02
177GO:0009561: megagametogenesis3.83E-02
178GO:0009626: plant-type hypersensitive response4.02E-02
179GO:0009737: response to abscisic acid4.26E-02
180GO:0042391: regulation of membrane potential4.29E-02
181GO:0042631: cellular response to water deprivation4.29E-02
182GO:0042545: cell wall modification4.41E-02
183GO:0006885: regulation of pH4.53E-02
184GO:0006520: cellular amino acid metabolic process4.53E-02
185GO:0009741: response to brassinosteroid4.53E-02
186GO:0048544: recognition of pollen4.76E-02
187GO:0006814: sodium ion transport4.76E-02
188GO:0042752: regulation of circadian rhythm4.76E-02
RankGO TermAdjusted P value
1GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
2GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
3GO:0004370: glycerol kinase activity0.00E+00
4GO:0003796: lysozyme activity0.00E+00
5GO:0008777: acetylornithine deacetylase activity0.00E+00
6GO:1990837: sequence-specific double-stranded DNA binding0.00E+00
7GO:0016301: kinase activity7.97E-08
8GO:0004674: protein serine/threonine kinase activity3.70E-07
9GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.85E-06
10GO:0004970: ionotropic glutamate receptor activity1.28E-05
11GO:0005217: intracellular ligand-gated ion channel activity1.28E-05
12GO:0005524: ATP binding3.74E-05
13GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity3.81E-05
14GO:0004351: glutamate decarboxylase activity8.16E-05
15GO:0004568: chitinase activity9.27E-05
16GO:0008171: O-methyltransferase activity9.27E-05
17GO:0010279: indole-3-acetic acid amido synthetase activity1.41E-04
18GO:0050660: flavin adenine dinucleotide binding1.81E-04
19GO:0005496: steroid binding2.17E-04
20GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.08E-04
21GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.08E-04
22GO:0102391: decanoate--CoA ligase activity4.08E-04
23GO:0004321: fatty-acyl-CoA synthase activity5.06E-04
24GO:0031957: very long-chain fatty acid-CoA ligase activity5.06E-04
25GO:0010285: L,L-diaminopimelate aminotransferase activity5.06E-04
26GO:0031127: alpha-(1,2)-fucosyltransferase activity5.06E-04
27GO:0004467: long-chain fatty acid-CoA ligase activity5.24E-04
28GO:0009055: electron carrier activity6.36E-04
29GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity1.09E-03
30GO:0050736: O-malonyltransferase activity1.09E-03
31GO:0019200: carbohydrate kinase activity1.09E-03
32GO:0042937: tripeptide transporter activity1.09E-03
33GO:0032454: histone demethylase activity (H3-K9 specific)1.09E-03
34GO:0004103: choline kinase activity1.09E-03
35GO:0050291: sphingosine N-acyltransferase activity1.09E-03
36GO:0010297: heteropolysaccharide binding1.09E-03
37GO:0045735: nutrient reservoir activity1.57E-03
38GO:0042409: caffeoyl-CoA O-methyltransferase activity1.78E-03
39GO:0031683: G-protein beta/gamma-subunit complex binding1.78E-03
40GO:0004751: ribose-5-phosphate isomerase activity1.78E-03
41GO:0004383: guanylate cyclase activity1.78E-03
42GO:0004478: methionine adenosyltransferase activity1.78E-03
43GO:0001664: G-protein coupled receptor binding1.78E-03
44GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.78E-03
45GO:0015238: drug transmembrane transporter activity2.48E-03
46GO:0015181: arginine transmembrane transporter activity2.58E-03
47GO:0042299: lupeol synthase activity2.58E-03
48GO:0010178: IAA-amino acid conjugate hydrolase activity2.58E-03
49GO:0015189: L-lysine transmembrane transporter activity2.58E-03
50GO:0017089: glycolipid transporter activity2.58E-03
51GO:0001653: peptide receptor activity2.58E-03
52GO:0030145: manganese ion binding2.80E-03
53GO:0030170: pyridoxal phosphate binding3.46E-03
54GO:0005313: L-glutamate transmembrane transporter activity3.48E-03
55GO:0004031: aldehyde oxidase activity3.48E-03
56GO:0050302: indole-3-acetaldehyde oxidase activity3.48E-03
57GO:0016866: intramolecular transferase activity3.48E-03
58GO:0009916: alternative oxidase activity3.48E-03
59GO:0015368: calcium:cation antiporter activity3.48E-03
60GO:0050373: UDP-arabinose 4-epimerase activity3.48E-03
61GO:0042936: dipeptide transporter activity3.48E-03
62GO:0051861: glycolipid binding3.48E-03
63GO:0015369: calcium:proton antiporter activity3.48E-03
64GO:0030246: carbohydrate binding3.69E-03
65GO:0004364: glutathione transferase activity4.15E-03
66GO:0052689: carboxylic ester hydrolase activity4.17E-03
67GO:0004040: amidase activity4.46E-03
68GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity4.46E-03
69GO:0031593: polyubiquitin binding5.53E-03
70GO:0047714: galactolipase activity5.53E-03
71GO:0004866: endopeptidase inhibitor activity5.53E-03
72GO:0005261: cation channel activity6.67E-03
73GO:0003978: UDP-glucose 4-epimerase activity6.67E-03
74GO:0004656: procollagen-proline 4-dioxygenase activity6.67E-03
75GO:0008113: peptide-methionine (S)-S-oxide reductase activity6.67E-03
76GO:0005085: guanyl-nucleotide exchange factor activity7.90E-03
77GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity7.90E-03
78GO:0052747: sinapyl alcohol dehydrogenase activity9.20E-03
79GO:0015491: cation:cation antiporter activity9.20E-03
80GO:0004714: transmembrane receptor protein tyrosine kinase activity9.20E-03
81GO:0008483: transaminase activity9.82E-03
82GO:0008237: metallopeptidase activity9.82E-03
83GO:0008970: phosphatidylcholine 1-acylhydrolase activity1.06E-02
84GO:0008417: fucosyltransferase activity1.20E-02
85GO:0016207: 4-coumarate-CoA ligase activity1.20E-02
86GO:0030247: polysaccharide binding1.30E-02
87GO:0046872: metal ion binding1.32E-02
88GO:0015174: basic amino acid transmembrane transporter activity1.35E-02
89GO:0031490: chromatin DNA binding1.35E-02
90GO:0016844: strictosidine synthase activity1.35E-02
91GO:0005516: calmodulin binding1.36E-02
92GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.37E-02
93GO:0008559: xenobiotic-transporting ATPase activity1.67E-02
94GO:0000976: transcription regulatory region sequence-specific DNA binding1.84E-02
95GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.84E-02
96GO:0045551: cinnamyl-alcohol dehydrogenase activity1.84E-02
97GO:0015297: antiporter activity1.90E-02
98GO:0015114: phosphate ion transmembrane transporter activity2.02E-02
99GO:0005388: calcium-transporting ATPase activity2.02E-02
100GO:0015266: protein channel activity2.02E-02
101GO:0004022: alcohol dehydrogenase (NAD) activity2.02E-02
102GO:0005262: calcium channel activity2.02E-02
103GO:0019888: protein phosphatase regulator activity2.02E-02
104GO:0008061: chitin binding2.38E-02
105GO:0030552: cAMP binding2.38E-02
106GO:0030553: cGMP binding2.38E-02
107GO:0051537: 2 iron, 2 sulfur cluster binding2.57E-02
108GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.73E-02
109GO:0001046: core promoter sequence-specific DNA binding2.77E-02
110GO:0031418: L-ascorbic acid binding2.77E-02
111GO:0005216: ion channel activity2.98E-02
112GO:0016298: lipase activity3.31E-02
113GO:0008168: methyltransferase activity3.32E-02
114GO:0015171: amino acid transmembrane transporter activity3.54E-02
115GO:0045330: aspartyl esterase activity3.54E-02
116GO:0004499: N,N-dimethylaniline monooxygenase activity3.83E-02
117GO:0030599: pectinesterase activity4.28E-02
118GO:0030551: cyclic nucleotide binding4.29E-02
119GO:0005451: monovalent cation:proton antiporter activity4.29E-02
120GO:0005249: voltage-gated potassium channel activity4.29E-02
121GO:0005199: structural constituent of cell wall4.53E-02
122GO:0015035: protein disulfide oxidoreductase activity4.67E-02
123GO:0015299: solute:proton antiporter activity4.76E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane1.79E-08
2GO:0016021: integral component of membrane4.56E-08
3GO:0005576: extracellular region6.47E-04
4GO:0009530: primary cell wall1.78E-03
5GO:0070062: extracellular exosome2.58E-03
6GO:0032588: trans-Golgi network membrane5.53E-03
7GO:0005770: late endosome6.15E-03
8GO:0071944: cell periphery8.67E-03
9GO:0031305: integral component of mitochondrial inner membrane9.20E-03
10GO:0032580: Golgi cisterna membrane9.24E-03
11GO:0008540: proteasome regulatory particle, base subcomplex1.35E-02
12GO:0000325: plant-type vacuole1.67E-02
13GO:0070469: respiratory chain2.98E-02
14GO:0000502: proteasome complex3.20E-02
15GO:0005829: cytosol3.50E-02
16GO:0005744: mitochondrial inner membrane presequence translocase complex3.83E-02
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Gene type



Gene DE type