GO Enrichment Analysis of Co-expressed Genes with
AT2G42130
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:1904966: positive regulation of vitamin E biosynthetic process | 0.00E+00 |
| 3 | GO:1904964: positive regulation of phytol biosynthetic process | 0.00E+00 |
| 4 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 5 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 6 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 7 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 8 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 9 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 10 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 11 | GO:0015979: photosynthesis | 3.46E-13 |
| 12 | GO:0009773: photosynthetic electron transport in photosystem I | 8.53E-08 |
| 13 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.16E-06 |
| 14 | GO:0032544: plastid translation | 2.21E-06 |
| 15 | GO:0010027: thylakoid membrane organization | 8.63E-06 |
| 16 | GO:0009735: response to cytokinin | 1.91E-05 |
| 17 | GO:0010196: nonphotochemical quenching | 8.59E-05 |
| 18 | GO:0071482: cellular response to light stimulus | 1.39E-04 |
| 19 | GO:0009657: plastid organization | 1.39E-04 |
| 20 | GO:0043489: RNA stabilization | 1.54E-04 |
| 21 | GO:0034337: RNA folding | 1.54E-04 |
| 22 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.54E-04 |
| 23 | GO:0015995: chlorophyll biosynthetic process | 2.25E-04 |
| 24 | GO:0018298: protein-chromophore linkage | 2.59E-04 |
| 25 | GO:0006412: translation | 2.61E-04 |
| 26 | GO:0043085: positive regulation of catalytic activity | 2.81E-04 |
| 27 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.51E-04 |
| 28 | GO:0034599: cellular response to oxidative stress | 3.76E-04 |
| 29 | GO:0008152: metabolic process | 3.80E-04 |
| 30 | GO:0090391: granum assembly | 5.75E-04 |
| 31 | GO:0051604: protein maturation | 5.75E-04 |
| 32 | GO:1902448: positive regulation of shade avoidance | 5.75E-04 |
| 33 | GO:0006000: fructose metabolic process | 5.75E-04 |
| 34 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 5.75E-04 |
| 35 | GO:0006418: tRNA aminoacylation for protein translation | 6.32E-04 |
| 36 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 8.23E-04 |
| 37 | GO:2001141: regulation of RNA biosynthetic process | 8.23E-04 |
| 38 | GO:0010021: amylopectin biosynthetic process | 1.09E-03 |
| 39 | GO:0051781: positive regulation of cell division | 1.09E-03 |
| 40 | GO:0009765: photosynthesis, light harvesting | 1.09E-03 |
| 41 | GO:0006109: regulation of carbohydrate metabolic process | 1.09E-03 |
| 42 | GO:0045727: positive regulation of translation | 1.09E-03 |
| 43 | GO:0015994: chlorophyll metabolic process | 1.09E-03 |
| 44 | GO:0006662: glycerol ether metabolic process | 1.11E-03 |
| 45 | GO:0045454: cell redox homeostasis | 1.21E-03 |
| 46 | GO:0019252: starch biosynthetic process | 1.28E-03 |
| 47 | GO:0032543: mitochondrial translation | 1.38E-03 |
| 48 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.38E-03 |
| 49 | GO:0006461: protein complex assembly | 1.38E-03 |
| 50 | GO:0006014: D-ribose metabolic process | 1.70E-03 |
| 51 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.70E-03 |
| 52 | GO:0000470: maturation of LSU-rRNA | 1.70E-03 |
| 53 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.03E-03 |
| 54 | GO:0010019: chloroplast-nucleus signaling pathway | 2.03E-03 |
| 55 | GO:1901259: chloroplast rRNA processing | 2.03E-03 |
| 56 | GO:0009451: RNA modification | 2.27E-03 |
| 57 | GO:0009772: photosynthetic electron transport in photosystem II | 2.39E-03 |
| 58 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.39E-03 |
| 59 | GO:0010492: maintenance of shoot apical meristem identity | 2.77E-03 |
| 60 | GO:0048564: photosystem I assembly | 2.77E-03 |
| 61 | GO:0045292: mRNA cis splicing, via spliceosome | 2.77E-03 |
| 62 | GO:0009642: response to light intensity | 2.77E-03 |
| 63 | GO:0009631: cold acclimation | 2.93E-03 |
| 64 | GO:0006002: fructose 6-phosphate metabolic process | 3.16E-03 |
| 65 | GO:0009637: response to blue light | 3.21E-03 |
| 66 | GO:0010206: photosystem II repair | 3.58E-03 |
| 67 | GO:0006754: ATP biosynthetic process | 3.58E-03 |
| 68 | GO:0000373: Group II intron splicing | 3.58E-03 |
| 69 | GO:0048507: meristem development | 3.58E-03 |
| 70 | GO:0009658: chloroplast organization | 3.83E-03 |
| 71 | GO:0042254: ribosome biogenesis | 3.92E-03 |
| 72 | GO:0010114: response to red light | 4.13E-03 |
| 73 | GO:0009073: aromatic amino acid family biosynthetic process | 4.92E-03 |
| 74 | GO:0006352: DNA-templated transcription, initiation | 4.92E-03 |
| 75 | GO:0006094: gluconeogenesis | 5.91E-03 |
| 76 | GO:0005986: sucrose biosynthetic process | 5.91E-03 |
| 77 | GO:0010207: photosystem II assembly | 6.42E-03 |
| 78 | GO:0019253: reductive pentose-phosphate cycle | 6.42E-03 |
| 79 | GO:0005985: sucrose metabolic process | 6.95E-03 |
| 80 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.63E-03 |
| 81 | GO:0016575: histone deacetylation | 8.63E-03 |
| 82 | GO:0016114: terpenoid biosynthetic process | 9.22E-03 |
| 83 | GO:0016226: iron-sulfur cluster assembly | 9.82E-03 |
| 84 | GO:0035428: hexose transmembrane transport | 9.82E-03 |
| 85 | GO:0006012: galactose metabolic process | 1.04E-02 |
| 86 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.04E-02 |
| 87 | GO:0009561: megagametogenesis | 1.11E-02 |
| 88 | GO:0042744: hydrogen peroxide catabolic process | 1.13E-02 |
| 89 | GO:0080022: primary root development | 1.24E-02 |
| 90 | GO:0009793: embryo development ending in seed dormancy | 1.31E-02 |
| 91 | GO:0046323: glucose import | 1.31E-02 |
| 92 | GO:0015986: ATP synthesis coupled proton transport | 1.37E-02 |
| 93 | GO:0000302: response to reactive oxygen species | 1.52E-02 |
| 94 | GO:0009828: plant-type cell wall loosening | 1.74E-02 |
| 95 | GO:0048481: plant ovule development | 2.38E-02 |
| 96 | GO:0009817: defense response to fungus, incompatible interaction | 2.38E-02 |
| 97 | GO:0010218: response to far red light | 2.55E-02 |
| 98 | GO:0045087: innate immune response | 2.81E-02 |
| 99 | GO:0016051: carbohydrate biosynthetic process | 2.81E-02 |
| 100 | GO:0030001: metal ion transport | 3.09E-02 |
| 101 | GO:0032259: methylation | 3.72E-02 |
| 102 | GO:0009664: plant-type cell wall organization | 3.96E-02 |
| 103 | GO:0006397: mRNA processing | 4.05E-02 |
| 104 | GO:0006364: rRNA processing | 4.17E-02 |
| 105 | GO:0043086: negative regulation of catalytic activity | 4.69E-02 |
| 106 | GO:0048316: seed development | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 2 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 3 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 4 | GO:0005048: signal sequence binding | 0.00E+00 |
| 5 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 6 | GO:0004561: alpha-N-acetylglucosaminidase activity | 0.00E+00 |
| 7 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 8 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 9 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 10 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 11 | GO:0019843: rRNA binding | 3.34E-11 |
| 12 | GO:0002161: aminoacyl-tRNA editing activity | 4.34E-06 |
| 13 | GO:0016851: magnesium chelatase activity | 1.01E-05 |
| 14 | GO:0008266: poly(U) RNA binding | 1.46E-05 |
| 15 | GO:0043495: protein anchor | 1.88E-05 |
| 16 | GO:0005528: FK506 binding | 2.55E-05 |
| 17 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.47E-05 |
| 18 | GO:0019899: enzyme binding | 8.59E-05 |
| 19 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.27E-04 |
| 20 | GO:0016168: chlorophyll binding | 1.94E-04 |
| 21 | GO:0003735: structural constituent of ribosome | 2.32E-04 |
| 22 | GO:0008047: enzyme activator activity | 2.40E-04 |
| 23 | GO:0016630: protochlorophyllide reductase activity | 3.51E-04 |
| 24 | GO:0047746: chlorophyllase activity | 3.51E-04 |
| 25 | GO:0033201: alpha-1,4-glucan synthase activity | 3.51E-04 |
| 26 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.51E-04 |
| 27 | GO:0004751: ribose-5-phosphate isomerase activity | 5.75E-04 |
| 28 | GO:0004373: glycogen (starch) synthase activity | 5.75E-04 |
| 29 | GO:0048487: beta-tubulin binding | 8.23E-04 |
| 30 | GO:0043023: ribosomal large subunit binding | 8.23E-04 |
| 31 | GO:0022891: substrate-specific transmembrane transporter activity | 8.23E-04 |
| 32 | GO:0003723: RNA binding | 8.44E-04 |
| 33 | GO:0047134: protein-disulfide reductase activity | 9.61E-04 |
| 34 | GO:0004812: aminoacyl-tRNA ligase activity | 9.61E-04 |
| 35 | GO:0009011: starch synthase activity | 1.09E-03 |
| 36 | GO:0001053: plastid sigma factor activity | 1.09E-03 |
| 37 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.09E-03 |
| 38 | GO:0016987: sigma factor activity | 1.09E-03 |
| 39 | GO:0004791: thioredoxin-disulfide reductase activity | 1.19E-03 |
| 40 | GO:0003959: NADPH dehydrogenase activity | 1.38E-03 |
| 41 | GO:0003729: mRNA binding | 1.69E-03 |
| 42 | GO:0016688: L-ascorbate peroxidase activity | 1.70E-03 |
| 43 | GO:0004130: cytochrome-c peroxidase activity | 1.70E-03 |
| 44 | GO:0004747: ribokinase activity | 2.03E-03 |
| 45 | GO:0008236: serine-type peptidase activity | 2.42E-03 |
| 46 | GO:0008312: 7S RNA binding | 2.77E-03 |
| 47 | GO:0004034: aldose 1-epimerase activity | 2.77E-03 |
| 48 | GO:0008865: fructokinase activity | 2.77E-03 |
| 49 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 3.16E-03 |
| 50 | GO:0016787: hydrolase activity | 3.48E-03 |
| 51 | GO:0030234: enzyme regulator activity | 4.46E-03 |
| 52 | GO:0000049: tRNA binding | 5.41E-03 |
| 53 | GO:0031072: heat shock protein binding | 5.91E-03 |
| 54 | GO:0009982: pseudouridine synthase activity | 5.91E-03 |
| 55 | GO:0031409: pigment binding | 7.49E-03 |
| 56 | GO:0051536: iron-sulfur cluster binding | 8.05E-03 |
| 57 | GO:0004857: enzyme inhibitor activity | 8.05E-03 |
| 58 | GO:0004407: histone deacetylase activity | 8.05E-03 |
| 59 | GO:0015035: protein disulfide oxidoreductase activity | 8.15E-03 |
| 60 | GO:0004176: ATP-dependent peptidase activity | 9.22E-03 |
| 61 | GO:0005509: calcium ion binding | 1.02E-02 |
| 62 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.31E-02 |
| 63 | GO:0005355: glucose transmembrane transporter activity | 1.37E-02 |
| 64 | GO:0050662: coenzyme binding | 1.37E-02 |
| 65 | GO:0016853: isomerase activity | 1.37E-02 |
| 66 | GO:0042802: identical protein binding | 1.74E-02 |
| 67 | GO:0008237: metallopeptidase activity | 1.81E-02 |
| 68 | GO:0008168: methyltransferase activity | 2.05E-02 |
| 69 | GO:0004601: peroxidase activity | 2.13E-02 |
| 70 | GO:0004721: phosphoprotein phosphatase activity | 2.21E-02 |
| 71 | GO:0046872: metal ion binding | 2.51E-02 |
| 72 | GO:0004222: metalloendopeptidase activity | 2.55E-02 |
| 73 | GO:0008233: peptidase activity | 2.59E-02 |
| 74 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.99E-02 |
| 75 | GO:0005525: GTP binding | 3.19E-02 |
| 76 | GO:0043621: protein self-association | 3.56E-02 |
| 77 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.17E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 4.44E-60 |
| 3 | GO:0009570: chloroplast stroma | 8.53E-39 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 6.58E-31 |
| 5 | GO:0009941: chloroplast envelope | 2.00E-22 |
| 6 | GO:0009579: thylakoid | 1.19E-21 |
| 7 | GO:0009534: chloroplast thylakoid | 1.15E-18 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 3.93E-16 |
| 9 | GO:0031977: thylakoid lumen | 3.44E-13 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 6.13E-07 |
| 11 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.12E-06 |
| 12 | GO:0019898: extrinsic component of membrane | 3.31E-06 |
| 13 | GO:0005840: ribosome | 4.51E-06 |
| 14 | GO:0042651: thylakoid membrane | 3.01E-05 |
| 15 | GO:0009523: photosystem II | 9.50E-05 |
| 16 | GO:0031969: chloroplast membrane | 1.48E-04 |
| 17 | GO:0009515: granal stacked thylakoid | 1.54E-04 |
| 18 | GO:0009547: plastid ribosome | 1.54E-04 |
| 19 | GO:0080085: signal recognition particle, chloroplast targeting | 3.51E-04 |
| 20 | GO:0010007: magnesium chelatase complex | 5.75E-04 |
| 21 | GO:0009526: plastid envelope | 1.09E-03 |
| 22 | GO:0009544: chloroplast ATP synthase complex | 1.09E-03 |
| 23 | GO:0055035: plastid thylakoid membrane | 1.38E-03 |
| 24 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.70E-03 |
| 25 | GO:0030529: intracellular ribonucleoprotein complex | 1.96E-03 |
| 26 | GO:0009533: chloroplast stromal thylakoid | 2.39E-03 |
| 27 | GO:0009501: amyloplast | 2.77E-03 |
| 28 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 3.16E-03 |
| 29 | GO:0000311: plastid large ribosomal subunit | 5.41E-03 |
| 30 | GO:0032040: small-subunit processome | 5.41E-03 |
| 31 | GO:0009508: plastid chromosome | 5.91E-03 |
| 32 | GO:0000312: plastid small ribosomal subunit | 6.42E-03 |
| 33 | GO:0030095: chloroplast photosystem II | 6.42E-03 |
| 34 | GO:0030076: light-harvesting complex | 6.95E-03 |
| 35 | GO:0015935: small ribosomal subunit | 9.22E-03 |
| 36 | GO:0010287: plastoglobule | 9.38E-03 |
| 37 | GO:0009522: photosystem I | 1.37E-02 |
| 38 | GO:0010319: stromule | 1.81E-02 |
| 39 | GO:0009295: nucleoid | 1.81E-02 |
| 40 | GO:0016020: membrane | 1.82E-02 |
| 41 | GO:0015934: large ribosomal subunit | 2.64E-02 |