Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G39960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1900367: positive regulation of defense response to insect0.00E+00
2GO:0080052: response to histidine0.00E+00
3GO:0042430: indole-containing compound metabolic process0.00E+00
4GO:0080053: response to phenylalanine0.00E+00
5GO:0006793: phosphorus metabolic process0.00E+00
6GO:0072722: response to amitrole0.00E+00
7GO:0071327: cellular response to trehalose stimulus0.00E+00
8GO:0043201: response to leucine0.00E+00
9GO:0042742: defense response to bacterium5.51E-09
10GO:0009617: response to bacterium8.20E-08
11GO:0080151: positive regulation of salicylic acid mediated signaling pathway2.41E-06
12GO:0006468: protein phosphorylation3.76E-06
13GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.94E-06
14GO:0019438: aromatic compound biosynthetic process2.00E-05
15GO:0009751: response to salicylic acid2.26E-05
16GO:0009627: systemic acquired resistance3.30E-05
17GO:0080142: regulation of salicylic acid biosynthetic process3.66E-05
18GO:0009697: salicylic acid biosynthetic process5.85E-05
19GO:0071456: cellular response to hypoxia9.34E-05
20GO:0010150: leaf senescence1.20E-04
21GO:0030026: cellular manganese ion homeostasis1.57E-04
22GO:0006952: defense response1.94E-04
23GO:0009700: indole phytoalexin biosynthetic process2.27E-04
24GO:0010230: alternative respiration2.27E-04
25GO:0055081: anion homeostasis2.27E-04
26GO:1901183: positive regulation of camalexin biosynthetic process2.27E-04
27GO:0046244: salicylic acid catabolic process2.27E-04
28GO:0019276: UDP-N-acetylgalactosamine metabolic process2.27E-04
29GO:0006047: UDP-N-acetylglucosamine metabolic process2.27E-04
30GO:0010120: camalexin biosynthetic process2.48E-04
31GO:2000031: regulation of salicylic acid mediated signaling pathway2.48E-04
32GO:0010112: regulation of systemic acquired resistance3.00E-04
33GO:0009615: response to virus3.74E-04
34GO:0009816: defense response to bacterium, incompatible interaction4.03E-04
35GO:0006032: chitin catabolic process4.18E-04
36GO:0000272: polysaccharide catabolic process4.83E-04
37GO:0031349: positive regulation of defense response5.05E-04
38GO:0042939: tripeptide transport5.05E-04
39GO:1902000: homogentisate catabolic process5.05E-04
40GO:0051592: response to calcium ion5.05E-04
41GO:0010618: aerenchyma formation5.05E-04
42GO:0090057: root radial pattern formation5.05E-04
43GO:0009611: response to wounding6.01E-04
44GO:0002237: response to molecule of bacterial origin7.06E-04
45GO:0070588: calcium ion transmembrane transport7.89E-04
46GO:0042343: indole glucosinolate metabolic process7.89E-04
47GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway8.21E-04
48GO:0006048: UDP-N-acetylglucosamine biosynthetic process8.21E-04
49GO:1900140: regulation of seedling development8.21E-04
50GO:0010351: lithium ion transport8.21E-04
51GO:0006011: UDP-glucose metabolic process8.21E-04
52GO:0010272: response to silver ion8.21E-04
53GO:0009072: aromatic amino acid family metabolic process8.21E-04
54GO:0000162: tryptophan biosynthetic process8.76E-04
55GO:0080147: root hair cell development9.67E-04
56GO:0051707: response to other organism9.77E-04
57GO:0006874: cellular calcium ion homeostasis1.06E-03
58GO:0016998: cell wall macromolecule catabolic process1.17E-03
59GO:0006882: cellular zinc ion homeostasis1.17E-03
60GO:0048194: Golgi vesicle budding1.17E-03
61GO:0033169: histone H3-K9 demethylation1.17E-03
62GO:0002239: response to oomycetes1.17E-03
63GO:0031348: negative regulation of defense response1.27E-03
64GO:0009625: response to insect1.38E-03
65GO:0006621: protein retention in ER lumen1.56E-03
66GO:0042938: dipeptide transport1.56E-03
67GO:0060548: negative regulation of cell death1.56E-03
68GO:0010387: COP9 signalosome assembly1.56E-03
69GO:0045088: regulation of innate immune response1.56E-03
70GO:0006536: glutamate metabolic process1.56E-03
71GO:0042391: regulation of membrane potential1.76E-03
72GO:0010225: response to UV-C1.99E-03
73GO:0000302: response to reactive oxygen species2.33E-03
74GO:0060918: auxin transport2.45E-03
75GO:0010942: positive regulation of cell death2.45E-03
76GO:0010256: endomembrane system organization2.45E-03
77GO:0010555: response to mannitol2.94E-03
78GO:0010310: regulation of hydrogen peroxide metabolic process2.94E-03
79GO:2000067: regulation of root morphogenesis2.94E-03
80GO:0071470: cellular response to osmotic stress2.94E-03
81GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.94E-03
82GO:0009737: response to abscisic acid3.41E-03
83GO:0000338: protein deneddylation3.47E-03
84GO:0019745: pentacyclic triterpenoid biosynthetic process3.47E-03
85GO:0006880: intracellular sequestering of iron ion3.47E-03
86GO:0071446: cellular response to salicylic acid stimulus3.47E-03
87GO:0032259: methylation3.59E-03
88GO:0009787: regulation of abscisic acid-activated signaling pathway4.02E-03
89GO:0031540: regulation of anthocyanin biosynthetic process4.02E-03
90GO:0006102: isocitrate metabolic process4.02E-03
91GO:0010928: regulation of auxin mediated signaling pathway4.02E-03
92GO:0007186: G-protein coupled receptor signaling pathway4.60E-03
93GO:0010497: plasmodesmata-mediated intercellular transport4.60E-03
94GO:0010262: somatic embryogenesis4.60E-03
95GO:0009699: phenylpropanoid biosynthetic process4.60E-03
96GO:0009407: toxin catabolic process4.82E-03
97GO:0009821: alkaloid biosynthetic process5.22E-03
98GO:0048268: clathrin coat assembly5.85E-03
99GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway5.85E-03
100GO:2000280: regulation of root development5.85E-03
101GO:1900426: positive regulation of defense response to bacterium5.85E-03
102GO:0010205: photoinhibition5.85E-03
103GO:0055062: phosphate ion homeostasis6.51E-03
104GO:0007064: mitotic sister chromatid cohesion6.51E-03
105GO:0043069: negative regulation of programmed cell death6.51E-03
106GO:0009682: induced systemic resistance7.20E-03
107GO:0009750: response to fructose7.20E-03
108GO:0002213: defense response to insect7.92E-03
109GO:0010105: negative regulation of ethylene-activated signaling pathway7.92E-03
110GO:0009636: response to toxic substance8.03E-03
111GO:0006855: drug transmembrane transport8.34E-03
112GO:0031347: regulation of defense response8.66E-03
113GO:0006626: protein targeting to mitochondrion8.66E-03
114GO:2000028: regulation of photoperiodism, flowering8.66E-03
115GO:0010143: cutin biosynthetic process9.42E-03
116GO:0016192: vesicle-mediated transport1.08E-02
117GO:0034976: response to endoplasmic reticulum stress1.10E-02
118GO:0010025: wax biosynthetic process1.10E-02
119GO:0006487: protein N-linked glycosylation1.19E-02
120GO:0015031: protein transport1.21E-02
121GO:0009626: plant-type hypersensitive response1.22E-02
122GO:0009620: response to fungus1.26E-02
123GO:0006886: intracellular protein transport1.33E-02
124GO:0098542: defense response to other organism1.36E-02
125GO:0009624: response to nematode1.38E-02
126GO:2000022: regulation of jasmonic acid mediated signaling pathway1.45E-02
127GO:0019748: secondary metabolic process1.45E-02
128GO:0042147: retrograde transport, endosome to Golgi1.73E-02
129GO:0009753: response to jasmonic acid1.82E-02
130GO:0055114: oxidation-reduction process1.91E-02
131GO:0009958: positive gravitropism1.93E-02
132GO:0048544: recognition of pollen2.03E-02
133GO:0006814: sodium ion transport2.03E-02
134GO:0006508: proteolysis2.06E-02
135GO:0009749: response to glucose2.14E-02
136GO:0006623: protein targeting to vacuole2.14E-02
137GO:0002229: defense response to oomycetes2.24E-02
138GO:0006891: intra-Golgi vesicle-mediated transport2.24E-02
139GO:0040008: regulation of growth2.28E-02
140GO:0071281: cellular response to iron ion2.46E-02
141GO:0009734: auxin-activated signaling pathway2.56E-02
142GO:0007166: cell surface receptor signaling pathway2.73E-02
143GO:0051607: defense response to virus2.80E-02
144GO:0010468: regulation of gene expression2.85E-02
145GO:0001666: response to hypoxia2.91E-02
146GO:0016049: cell growth3.40E-02
147GO:0009817: defense response to fungus, incompatible interaction3.52E-02
148GO:0008219: cell death3.52E-02
149GO:0006499: N-terminal protein myristoylation3.77E-02
150GO:0009409: response to cold4.10E-02
151GO:0045087: innate immune response4.17E-02
152GO:0006099: tricarboxylic acid cycle4.30E-02
153GO:0080167: response to karrikin4.56E-02
154GO:0006897: endocytosis4.71E-02
155GO:0006631: fatty acid metabolic process4.71E-02
156GO:0042542: response to hydrogen peroxide4.85E-02
157GO:0044550: secondary metabolite biosynthetic process4.94E-02
158GO:0009640: photomorphogenesis4.98E-02
159GO:0009744: response to sucrose4.98E-02
RankGO TermAdjusted P value
1GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
2GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
3GO:0005046: KDEL sequence binding0.00E+00
4GO:0016034: maleylacetoacetate isomerase activity0.00E+00
5GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
6GO:0004656: procollagen-proline 4-dioxygenase activity1.59E-06
7GO:0005524: ATP binding6.86E-06
8GO:0004674: protein serine/threonine kinase activity3.21E-05
9GO:0005516: calmodulin binding6.79E-05
10GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors7.05E-05
11GO:0016301: kinase activity7.61E-05
12GO:0004048: anthranilate phosphoribosyltransferase activity2.27E-04
13GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity2.27E-04
14GO:0031957: very long-chain fatty acid-CoA ligase activity2.27E-04
15GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity2.27E-04
16GO:0004425: indole-3-glycerol-phosphate synthase activity2.27E-04
17GO:0004568: chitinase activity4.18E-04
18GO:0008171: O-methyltransferase activity4.18E-04
19GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.95E-04
20GO:0042937: tripeptide transporter activity5.05E-04
21GO:0032454: histone demethylase activity (H3-K9 specific)5.05E-04
22GO:0004103: choline kinase activity5.05E-04
23GO:0004566: beta-glucuronidase activity5.05E-04
24GO:0005388: calcium-transporting ATPase activity6.27E-04
25GO:0008061: chitin binding7.89E-04
26GO:0004190: aspartic-type endopeptidase activity7.89E-04
27GO:0030552: cAMP binding7.89E-04
28GO:0030553: cGMP binding7.89E-04
29GO:0004148: dihydrolipoyl dehydrogenase activity8.21E-04
30GO:0031683: G-protein beta/gamma-subunit complex binding8.21E-04
31GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity8.21E-04
32GO:0001664: G-protein coupled receptor binding8.21E-04
33GO:0031418: L-ascorbic acid binding9.67E-04
34GO:0005216: ion channel activity1.06E-03
35GO:0035529: NADH pyrophosphatase activity1.17E-03
36GO:0004449: isocitrate dehydrogenase (NAD+) activity1.17E-03
37GO:0042299: lupeol synthase activity1.17E-03
38GO:0004351: glutamate decarboxylase activity1.17E-03
39GO:0016866: intramolecular transferase activity1.56E-03
40GO:0015368: calcium:cation antiporter activity1.56E-03
41GO:0042936: dipeptide transporter activity1.56E-03
42GO:0015369: calcium:proton antiporter activity1.56E-03
43GO:0046923: ER retention sequence binding1.56E-03
44GO:0030551: cyclic nucleotide binding1.76E-03
45GO:0005249: voltage-gated potassium channel activity1.76E-03
46GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity1.99E-03
47GO:0004040: amidase activity1.99E-03
48GO:0047631: ADP-ribose diphosphatase activity1.99E-03
49GO:0005506: iron ion binding2.25E-03
50GO:0000210: NAD+ diphosphatase activity2.45E-03
51GO:0004029: aldehyde dehydrogenase (NAD) activity2.45E-03
52GO:0102391: decanoate--CoA ligase activity2.94E-03
53GO:0004012: phospholipid-translocating ATPase activity2.94E-03
54GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.14E-03
55GO:0008320: protein transmembrane transporter activity3.47E-03
56GO:0004467: long-chain fatty acid-CoA ligase activity3.47E-03
57GO:0008565: protein transporter activity3.69E-03
58GO:0004033: aldo-keto reductase (NADP) activity4.02E-03
59GO:0015491: cation:cation antiporter activity4.02E-03
60GO:0004714: transmembrane receptor protein tyrosine kinase activity4.02E-03
61GO:0004564: beta-fructofuranosidase activity4.02E-03
62GO:0015238: drug transmembrane transporter activity4.60E-03
63GO:0004222: metalloendopeptidase activity4.82E-03
64GO:0004672: protein kinase activity4.95E-03
65GO:0005384: manganese ion transmembrane transporter activity5.85E-03
66GO:0031490: chromatin DNA binding5.85E-03
67GO:0016844: strictosidine synthase activity5.85E-03
68GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity5.85E-03
69GO:0004575: sucrose alpha-glucosidase activity5.85E-03
70GO:0005381: iron ion transmembrane transporter activity5.85E-03
71GO:0005545: 1-phosphatidylinositol binding6.51E-03
72GO:0004364: glutathione transferase activity6.86E-03
73GO:0008559: xenobiotic-transporting ATPase activity7.20E-03
74GO:0008168: methyltransferase activity7.35E-03
75GO:0000976: transcription regulatory region sequence-specific DNA binding7.92E-03
76GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism8.66E-03
77GO:0015095: magnesium ion transmembrane transporter activity8.66E-03
78GO:0051287: NAD binding8.66E-03
79GO:0005262: calcium channel activity8.66E-03
80GO:0043531: ADP binding8.67E-03
81GO:0016298: lipase activity9.98E-03
82GO:0005217: intracellular ligand-gated ion channel activity1.02E-02
83GO:0004970: ionotropic glutamate receptor activity1.02E-02
84GO:0004867: serine-type endopeptidase inhibitor activity1.02E-02
85GO:0004707: MAP kinase activity1.36E-02
86GO:0033612: receptor serine/threonine kinase binding1.36E-02
87GO:0016779: nucleotidyltransferase activity1.45E-02
88GO:0019825: oxygen binding1.56E-02
89GO:0003756: protein disulfide isomerase activity1.64E-02
90GO:0008514: organic anion transmembrane transporter activity1.64E-02
91GO:0030276: clathrin binding1.93E-02
92GO:0004872: receptor activity2.14E-02
93GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.22E-02
94GO:0015297: antiporter activity2.28E-02
95GO:0005509: calcium ion binding2.34E-02
96GO:0051213: dioxygenase activity2.91E-02
97GO:0004806: triglyceride lipase activity3.27E-02
98GO:0030247: polysaccharide binding3.27E-02
99GO:0004683: calmodulin-dependent protein kinase activity3.27E-02
100GO:0000287: magnesium ion binding3.62E-02
101GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.90E-02
102GO:0050897: cobalt ion binding3.90E-02
103GO:0030145: manganese ion binding3.90E-02
104GO:0050660: flavin adenine dinucleotide binding4.26E-02
105GO:0004712: protein serine/threonine/tyrosine kinase activity4.43E-02
106GO:0008233: peptidase activity4.48E-02
107GO:0004497: monooxygenase activity4.56E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane4.85E-09
2GO:0005783: endoplasmic reticulum1.01E-08
3GO:0005886: plasma membrane1.47E-05
4GO:0005801: cis-Golgi network1.19E-04
5GO:0005765: lysosomal membrane4.83E-04
6GO:0030134: ER to Golgi transport vesicle5.05E-04
7GO:0005794: Golgi apparatus6.97E-04
8GO:0005887: integral component of plasma membrane1.45E-03
9GO:0030660: Golgi-associated vesicle membrane1.56E-03
10GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane1.56E-03
11GO:0005789: endoplasmic reticulum membrane1.65E-03
12GO:0000164: protein phosphatase type 1 complex1.99E-03
13GO:0008250: oligosaccharyltransferase complex1.99E-03
14GO:0010168: ER body2.45E-03
15GO:0005774: vacuolar membrane3.51E-03
16GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane4.02E-03
17GO:0009705: plant-type vacuole membrane4.43E-03
18GO:0008180: COP9 signalosome5.22E-03
19GO:0030665: clathrin-coated vesicle membrane5.85E-03
20GO:0017119: Golgi transport complex6.51E-03
21GO:0005829: cytosol6.53E-03
22GO:0005576: extracellular region8.61E-03
23GO:0031012: extracellular matrix8.66E-03
24GO:0005795: Golgi stack1.02E-02
25GO:0005769: early endosome1.10E-02
26GO:0005905: clathrin-coated pit1.36E-02
27GO:0030136: clathrin-coated vesicle1.73E-02
28GO:0005623: cell1.77E-02
29GO:0005802: trans-Golgi network1.86E-02
30GO:0000785: chromatin2.35E-02
31GO:0032580: Golgi cisterna membrane2.57E-02
32GO:0048046: apoplast2.82E-02
33GO:0005788: endoplasmic reticulum lumen3.03E-02
34GO:0005643: nuclear pore3.52E-02
35GO:0000325: plant-type vacuole3.90E-02
36GO:0031902: late endosome membrane4.71E-02
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Gene type



Gene DE type