Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G39900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0042759: long-chain fatty acid biosynthetic process1.48E-05
3GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process1.48E-05
4GO:0010541: acropetal auxin transport3.88E-05
5GO:0045493: xylan catabolic process6.95E-05
6GO:0010160: formation of animal organ boundary6.95E-05
7GO:0010306: rhamnogalacturonan II biosynthetic process1.05E-04
8GO:0051513: regulation of monopolar cell growth1.05E-04
9GO:0043481: anthocyanin accumulation in tissues in response to UV light1.05E-04
10GO:0009913: epidermal cell differentiation2.34E-04
11GO:0060918: auxin transport2.34E-04
12GO:0045490: pectin catabolic process6.98E-04
13GO:0008361: regulation of cell size7.29E-04
14GO:0010540: basipetal auxin transport8.55E-04
15GO:0071555: cell wall organization8.78E-04
16GO:0010025: wax biosynthetic process9.85E-04
17GO:0030245: cellulose catabolic process1.26E-03
18GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.34E-03
19GO:0048443: stamen development1.41E-03
20GO:0009958: positive gravitropism1.65E-03
21GO:0048868: pollen tube development1.65E-03
22GO:0048825: cotyledon development1.81E-03
23GO:0009639: response to red or far red light2.15E-03
24GO:0009828: plant-type cell wall loosening2.15E-03
25GO:0009627: systemic acquired resistance2.61E-03
26GO:0010411: xyloglucan metabolic process2.70E-03
27GO:0010218: response to far red light3.09E-03
28GO:0048527: lateral root development3.20E-03
29GO:0009637: response to blue light3.40E-03
30GO:0030001: metal ion transport3.71E-03
31GO:0009926: auxin polar transport4.04E-03
32GO:0009640: photomorphogenesis4.04E-03
33GO:0009664: plant-type cell wall organization4.71E-03
34GO:0009740: gibberellic acid mediated signaling pathway6.05E-03
35GO:0009845: seed germination7.79E-03
36GO:0007623: circadian rhythm9.23E-03
37GO:0009739: response to gibberellin9.99E-03
38GO:0010468: regulation of gene expression1.04E-02
39GO:0009826: unidimensional cell growth1.22E-02
40GO:0009860: pollen tube growth1.32E-02
41GO:0045454: cell redox homeostasis1.66E-02
42GO:0006869: lipid transport1.77E-02
43GO:0048364: root development1.99E-02
44GO:0006508: proteolysis2.06E-02
45GO:0008152: metabolic process2.07E-02
46GO:0009734: auxin-activated signaling pathway2.46E-02
47GO:0035556: intracellular signal transduction3.01E-02
48GO:0055085: transmembrane transport3.44E-02
RankGO TermAdjusted P value
1GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
2GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
3GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
4GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity1.48E-05
5GO:0030570: pectate lyase activity3.32E-05
6GO:0009044: xylan 1,4-beta-xylosidase activity1.45E-04
7GO:0046556: alpha-L-arabinofuranosidase activity1.45E-04
8GO:0016829: lyase activity5.52E-04
9GO:0010329: auxin efflux transmembrane transporter activity7.91E-04
10GO:0004707: MAP kinase activity1.19E-03
11GO:0008810: cellulase activity1.34E-03
12GO:0008289: lipid binding2.61E-03
13GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.35E-03
14GO:0030246: carbohydrate binding4.44E-03
15GO:0015171: amino acid transmembrane transporter activity5.31E-03
16GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups5.68E-03
17GO:0004650: polygalacturonase activity5.93E-03
18GO:0004252: serine-type endopeptidase activity7.93E-03
19GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.09E-02
20GO:0000166: nucleotide binding2.90E-02
21GO:0016740: transferase activity3.34E-02
22GO:0005515: protein binding4.70E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0005576: extracellular region1.86E-06
3GO:0005618: cell wall1.19E-05
4GO:0042644: chloroplast nucleoid4.93E-04
5GO:0048046: apoplast7.63E-04
6GO:0009508: plastid chromosome7.91E-04
7GO:0009505: plant-type cell wall1.16E-03
8GO:0009295: nucleoid2.24E-03
9GO:0009535: chloroplast thylakoid membrane2.39E-03
10GO:0009534: chloroplast thylakoid3.99E-03
11GO:0009706: chloroplast inner membrane6.31E-03
12GO:0009941: chloroplast envelope3.15E-02
13GO:0016020: membrane4.30E-02
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Gene type



Gene DE type