GO Enrichment Analysis of Co-expressed Genes with
AT2G39290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 4 | GO:0051246: regulation of protein metabolic process | 0.00E+00 |
| 5 | GO:0032544: plastid translation | 6.41E-08 |
| 6 | GO:0010027: thylakoid membrane organization | 8.49E-06 |
| 7 | GO:0045036: protein targeting to chloroplast | 2.67E-05 |
| 8 | GO:0043085: positive regulation of catalytic activity | 3.20E-05 |
| 9 | GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 3.50E-05 |
| 10 | GO:0006729: tetrahydrobiopterin biosynthetic process | 8.78E-05 |
| 11 | GO:0007023: post-chaperonin tubulin folding pathway | 8.78E-05 |
| 12 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 8.78E-05 |
| 13 | GO:0051604: protein maturation | 1.52E-04 |
| 14 | GO:0010581: regulation of starch biosynthetic process | 1.52E-04 |
| 15 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 1.52E-04 |
| 16 | GO:0090391: granum assembly | 1.52E-04 |
| 17 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 2.25E-04 |
| 18 | GO:2001141: regulation of RNA biosynthetic process | 2.25E-04 |
| 19 | GO:0006809: nitric oxide biosynthetic process | 2.25E-04 |
| 20 | GO:0006424: glutamyl-tRNA aminoacylation | 2.25E-04 |
| 21 | GO:0006109: regulation of carbohydrate metabolic process | 3.05E-04 |
| 22 | GO:0006546: glycine catabolic process | 3.05E-04 |
| 23 | GO:0009658: chloroplast organization | 3.23E-04 |
| 24 | GO:0010236: plastoquinone biosynthetic process | 3.89E-04 |
| 25 | GO:0045038: protein import into chloroplast thylakoid membrane | 3.89E-04 |
| 26 | GO:0031365: N-terminal protein amino acid modification | 3.89E-04 |
| 27 | GO:0009107: lipoate biosynthetic process | 3.89E-04 |
| 28 | GO:0007021: tubulin complex assembly | 3.89E-04 |
| 29 | GO:0032543: mitochondrial translation | 3.89E-04 |
| 30 | GO:0042549: photosystem II stabilization | 4.78E-04 |
| 31 | GO:0010189: vitamin E biosynthetic process | 5.70E-04 |
| 32 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 5.70E-04 |
| 33 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 6.66E-04 |
| 34 | GO:0010196: nonphotochemical quenching | 6.66E-04 |
| 35 | GO:0009642: response to light intensity | 7.68E-04 |
| 36 | GO:0071482: cellular response to light stimulus | 8.71E-04 |
| 37 | GO:0009657: plastid organization | 8.71E-04 |
| 38 | GO:0019430: removal of superoxide radicals | 8.71E-04 |
| 39 | GO:1900865: chloroplast RNA modification | 1.09E-03 |
| 40 | GO:0010380: regulation of chlorophyll biosynthetic process | 1.09E-03 |
| 41 | GO:0006535: cysteine biosynthetic process from serine | 1.20E-03 |
| 42 | GO:0006352: DNA-templated transcription, initiation | 1.32E-03 |
| 43 | GO:0009073: aromatic amino acid family biosynthetic process | 1.32E-03 |
| 44 | GO:0009790: embryo development | 1.65E-03 |
| 45 | GO:0006457: protein folding | 1.94E-03 |
| 46 | GO:0019344: cysteine biosynthetic process | 2.12E-03 |
| 47 | GO:0009695: jasmonic acid biosynthetic process | 2.26E-03 |
| 48 | GO:0031408: oxylipin biosynthetic process | 2.41E-03 |
| 49 | GO:0016117: carotenoid biosynthetic process | 3.03E-03 |
| 50 | GO:0000413: protein peptidyl-prolyl isomerization | 3.20E-03 |
| 51 | GO:0006662: glycerol ether metabolic process | 3.36E-03 |
| 52 | GO:0010193: response to ozone | 3.88E-03 |
| 53 | GO:0016032: viral process | 4.06E-03 |
| 54 | GO:0015979: photosynthesis | 4.21E-03 |
| 55 | GO:0009567: double fertilization forming a zygote and endosperm | 4.42E-03 |
| 56 | GO:0045454: cell redox homeostasis | 4.42E-03 |
| 57 | GO:0000910: cytokinesis | 4.80E-03 |
| 58 | GO:0015995: chlorophyll biosynthetic process | 5.58E-03 |
| 59 | GO:0009817: defense response to fungus, incompatible interaction | 5.99E-03 |
| 60 | GO:0006412: translation | 6.93E-03 |
| 61 | GO:0009637: response to blue light | 7.05E-03 |
| 62 | GO:0034599: cellular response to oxidative stress | 7.27E-03 |
| 63 | GO:0010114: response to red light | 8.41E-03 |
| 64 | GO:0009735: response to cytokinin | 8.81E-03 |
| 65 | GO:0043086: negative regulation of catalytic activity | 1.17E-02 |
| 66 | GO:0006508: proteolysis | 1.42E-02 |
| 67 | GO:0042744: hydrogen peroxide catabolic process | 1.71E-02 |
| 68 | GO:0006633: fatty acid biosynthetic process | 1.83E-02 |
| 69 | GO:0009451: RNA modification | 1.99E-02 |
| 70 | GO:0042254: ribosome biogenesis | 2.71E-02 |
| 71 | GO:0009860: pollen tube growth | 2.82E-02 |
| 72 | GO:0048366: leaf development | 3.00E-02 |
| 73 | GO:0046686: response to cadmium ion | 3.05E-02 |
| 74 | GO:0080167: response to karrikin | 3.11E-02 |
| 75 | GO:0032259: methylation | 3.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005048: signal sequence binding | 0.00E+00 |
| 2 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 3 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 4 | GO:0005525: GTP binding | 3.31E-06 |
| 5 | GO:0008047: enzyme activator activity | 2.67E-05 |
| 6 | GO:0005080: protein kinase C binding | 3.50E-05 |
| 7 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 3.50E-05 |
| 8 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 3.50E-05 |
| 9 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 3.50E-05 |
| 10 | GO:0004321: fatty-acyl-CoA synthase activity | 3.50E-05 |
| 11 | GO:0000774: adenyl-nucleotide exchange factor activity | 8.78E-05 |
| 12 | GO:0019843: rRNA binding | 1.13E-04 |
| 13 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 1.52E-04 |
| 14 | GO:0016992: lipoate synthase activity | 1.52E-04 |
| 15 | GO:0004791: thioredoxin-disulfide reductase activity | 1.74E-04 |
| 16 | GO:0043023: ribosomal large subunit binding | 2.25E-04 |
| 17 | GO:0016851: magnesium chelatase activity | 2.25E-04 |
| 18 | GO:0048487: beta-tubulin binding | 2.25E-04 |
| 19 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.30E-04 |
| 20 | GO:0001053: plastid sigma factor activity | 3.05E-04 |
| 21 | GO:0016987: sigma factor activity | 3.05E-04 |
| 22 | GO:0004124: cysteine synthase activity | 5.70E-04 |
| 23 | GO:0008235: metalloexopeptidase activity | 6.66E-04 |
| 24 | GO:0003924: GTPase activity | 6.94E-04 |
| 25 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.17E-04 |
| 26 | GO:0008312: 7S RNA binding | 7.68E-04 |
| 27 | GO:0016207: 4-coumarate-CoA ligase activity | 9.78E-04 |
| 28 | GO:0051082: unfolded protein binding | 1.15E-03 |
| 29 | GO:0004177: aminopeptidase activity | 1.32E-03 |
| 30 | GO:0009982: pseudouridine synthase activity | 1.57E-03 |
| 31 | GO:0004857: enzyme inhibitor activity | 2.12E-03 |
| 32 | GO:0005528: FK506 binding | 2.12E-03 |
| 33 | GO:0051087: chaperone binding | 2.26E-03 |
| 34 | GO:0043424: protein histidine kinase binding | 2.26E-03 |
| 35 | GO:0004176: ATP-dependent peptidase activity | 2.41E-03 |
| 36 | GO:0047134: protein-disulfide reductase activity | 3.03E-03 |
| 37 | GO:0003723: RNA binding | 3.35E-03 |
| 38 | GO:0008237: metallopeptidase activity | 4.60E-03 |
| 39 | GO:0042803: protein homodimerization activity | 4.62E-03 |
| 40 | GO:0008236: serine-type peptidase activity | 5.78E-03 |
| 41 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 5.78E-03 |
| 42 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 5.99E-03 |
| 43 | GO:0003735: structural constituent of ribosome | 8.17E-03 |
| 44 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.04E-02 |
| 45 | GO:0016740: transferase activity | 1.18E-02 |
| 46 | GO:0016874: ligase activity | 1.27E-02 |
| 47 | GO:0015035: protein disulfide oxidoreductase activity | 1.36E-02 |
| 48 | GO:0005507: copper ion binding | 1.38E-02 |
| 49 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.59E-02 |
| 50 | GO:0030170: pyridoxal phosphate binding | 1.68E-02 |
| 51 | GO:0042802: identical protein binding | 2.32E-02 |
| 52 | GO:0008168: methyltransferase activity | 2.60E-02 |
| 53 | GO:0005515: protein binding | 2.63E-02 |
| 54 | GO:0000287: magnesium ion binding | 2.64E-02 |
| 55 | GO:0016788: hydrolase activity, acting on ester bonds | 2.71E-02 |
| 56 | GO:0008233: peptidase activity | 3.08E-02 |
| 57 | GO:0004497: monooxygenase activity | 3.11E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 5.18E-33 |
| 2 | GO:0009570: chloroplast stroma | 2.27E-19 |
| 3 | GO:0009941: chloroplast envelope | 3.91E-16 |
| 4 | GO:0009579: thylakoid | 5.32E-11 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 5.07E-06 |
| 6 | GO:0031977: thylakoid lumen | 2.62E-05 |
| 7 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 3.50E-05 |
| 8 | GO:0009515: granal stacked thylakoid | 3.50E-05 |
| 9 | GO:0000312: plastid small ribosomal subunit | 5.08E-05 |
| 10 | GO:0080085: signal recognition particle, chloroplast targeting | 8.78E-05 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 1.13E-04 |
| 12 | GO:0005623: cell | 1.18E-04 |
| 13 | GO:0010007: magnesium chelatase complex | 1.52E-04 |
| 14 | GO:0009509: chromoplast | 1.52E-04 |
| 15 | GO:0009534: chloroplast thylakoid | 2.55E-04 |
| 16 | GO:0009526: plastid envelope | 3.05E-04 |
| 17 | GO:0055035: plastid thylakoid membrane | 3.89E-04 |
| 18 | GO:0009533: chloroplast stromal thylakoid | 6.66E-04 |
| 19 | GO:0009536: plastid | 7.83E-04 |
| 20 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 8.71E-04 |
| 21 | GO:0005759: mitochondrial matrix | 1.78E-03 |
| 22 | GO:0009654: photosystem II oxygen evolving complex | 2.26E-03 |
| 23 | GO:0015935: small ribosomal subunit | 2.41E-03 |
| 24 | GO:0009532: plastid stroma | 2.41E-03 |
| 25 | GO:0022627: cytosolic small ribosomal subunit | 2.56E-03 |
| 26 | GO:0019898: extrinsic component of membrane | 3.70E-03 |
| 27 | GO:0009707: chloroplast outer membrane | 5.99E-03 |
| 28 | GO:0009706: chloroplast inner membrane | 1.33E-02 |
| 29 | GO:0005802: trans-Golgi network | 1.55E-02 |
| 30 | GO:0005622: intracellular | 1.72E-02 |
| 31 | GO:0005768: endosome | 1.76E-02 |
| 32 | GO:0005840: ribosome | 2.05E-02 |
| 33 | GO:0031969: chloroplast membrane | 3.11E-02 |
| 34 | GO:0005739: mitochondrion | 4.59E-02 |