co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G39220

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043201: response to leucine	0.00E+00
2	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
3	GO:0080052: response to histidine	0.00E+00
4	GO:0080053: response to phenylalanine	0.00E+00
5	GO:0051238: sequestering of metal ion	0.00E+00
6	GO:0006497: protein lipidation	0.00E+00
7	GO:0006182: cGMP biosynthetic process	0.00E+00
8	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
9	GO:0010055: atrichoblast differentiation	0.00E+00
10	GO:0090480: purine nucleotide-sugar transmembrane transport	0.00E+00
11	GO:0009620: response to fungus	8.17E-06
12	GO:0010150: leaf senescence	4.72E-05
13	GO:0009817: defense response to fungus, incompatible interaction	1.17E-04
14	GO:0042742: defense response to bacterium	1.75E-04
15	GO:0071456: cellular response to hypoxia	1.96E-04
16	GO:0051938: L-glutamate import	3.24E-04
17	GO:0042350: GDP-L-fucose biosynthetic process	3.24E-04
18	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	3.24E-04
19	GO:0010726: positive regulation of hydrogen peroxide metabolic process	3.24E-04
20	GO:1901183: positive regulation of camalexin biosynthetic process	3.24E-04
21	GO:0042759: long-chain fatty acid biosynthetic process	3.24E-04
22	GO:0032107: regulation of response to nutrient levels	3.24E-04
23	GO:0046167: glycerol-3-phosphate biosynthetic process	3.24E-04
24	GO:0010120: camalexin biosynthetic process	4.17E-04
25	GO:0050832: defense response to fungus	4.33E-04
26	GO:0009617: response to bacterium	4.64E-04
27	GO:0006641: triglyceride metabolic process	7.07E-04
28	GO:0051645: Golgi localization	7.07E-04
29	GO:0009866: induced systemic resistance, ethylene mediated signaling pathway	7.07E-04
30	GO:0019374: galactolipid metabolic process	7.07E-04
31	GO:0043066: negative regulation of apoptotic process	7.07E-04
32	GO:0042939: tripeptide transport	7.07E-04
33	GO:0060151: peroxisome localization	7.07E-04
34	GO:0042325: regulation of phosphorylation	7.07E-04
35	GO:0043091: L-arginine import	7.07E-04
36	GO:0080183: response to photooxidative stress	7.07E-04
37	GO:0015802: basic amino acid transport	7.07E-04
38	GO:1900055: regulation of leaf senescence	1.15E-03
39	GO:0051646: mitochondrion localization	1.15E-03
40	GO:0006556: S-adenosylmethionine biosynthetic process	1.15E-03
41	GO:0019563: glycerol catabolic process	1.15E-03
42	GO:0090436: leaf pavement cell development	1.15E-03
43	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	1.15E-03
44	GO:0015783: GDP-fucose transport	1.15E-03
45	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	1.15E-03
46	GO:0006468: protein phosphorylation	1.33E-03
47	GO:0080147: root hair cell development	1.59E-03
48	GO:0006107: oxaloacetate metabolic process	1.65E-03
49	GO:0006072: glycerol-3-phosphate metabolic process	1.65E-03
50	GO:0009226: nucleotide-sugar biosynthetic process	1.65E-03
51	GO:0046513: ceramide biosynthetic process	1.65E-03
52	GO:0033169: histone H3-K9 demethylation	1.65E-03
53	GO:0070301: cellular response to hydrogen peroxide	1.65E-03
54	GO:0051707: response to other organism	1.87E-03
55	GO:0016998: cell wall macromolecule catabolic process	1.93E-03
56	GO:0009751: response to salicylic acid	2.07E-03
57	GO:0007166: cell surface receptor signaling pathway	2.13E-03
58	GO:0009636: response to toxic substance	2.17E-03
59	GO:0006536: glutamate metabolic process	2.21E-03
60	GO:0033358: UDP-L-arabinose biosynthetic process	2.21E-03
61	GO:0033356: UDP-L-arabinose metabolic process	2.21E-03
62	GO:1901002: positive regulation of response to salt stress	2.21E-03
63	GO:0006734: NADH metabolic process	2.21E-03
64	GO:0010188: response to microbial phytotoxin	2.21E-03
65	GO:0042938: dipeptide transport	2.21E-03
66	GO:0045227: capsule polysaccharide biosynthetic process	2.21E-03
67	GO:0030041: actin filament polymerization	2.82E-03
68	GO:0006555: methionine metabolic process	3.49E-03
69	GO:0042176: regulation of protein catabolic process	3.49E-03
70	GO:0002238: response to molecule of fungal origin	3.49E-03
71	GO:0006561: proline biosynthetic process	3.49E-03
72	GO:0010942: positive regulation of cell death	3.49E-03
73	GO:0015691: cadmium ion transport	3.49E-03
74	GO:0019509: L-methionine salvage from methylthioadenosine	4.20E-03
75	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.20E-03
76	GO:0010252: auxin homeostasis	4.72E-03
77	GO:1900056: negative regulation of leaf senescence	4.95E-03
78	GO:0019745: pentacyclic triterpenoid biosynthetic process	4.95E-03
79	GO:0050829: defense response to Gram-negative bacterium	4.95E-03
80	GO:1900057: positive regulation of leaf senescence	4.95E-03
81	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	4.95E-03
82	GO:0051607: defense response to virus	5.32E-03
83	GO:0009615: response to virus	5.63E-03
84	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	5.76E-03
85	GO:0009850: auxin metabolic process	5.76E-03
86	GO:0006102: isocitrate metabolic process	5.76E-03
87	GO:0006644: phospholipid metabolic process	5.76E-03
88	GO:0009627: systemic acquired resistance	6.29E-03
89	GO:0010204: defense response signaling pathway, resistance gene-independent	6.60E-03
90	GO:0006952: defense response	6.62E-03
91	GO:0008219: cell death	7.35E-03
92	GO:0009821: alkaloid biosynthetic process	7.48E-03
93	GO:0009056: catabolic process	7.48E-03
94	GO:0015780: nucleotide-sugar transport	7.48E-03
95	GO:0009407: toxin catabolic process	8.11E-03
96	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	8.41E-03
97	GO:0007568: aging	8.51E-03
98	GO:0010162: seed dormancy process	9.37E-03
99	GO:0007064: mitotic sister chromatid cohesion	9.37E-03
100	GO:0009870: defense response signaling pathway, resistance gene-dependent	9.37E-03
101	GO:0006032: chitin catabolic process	9.37E-03
102	GO:0009688: abscisic acid biosynthetic process	9.37E-03
103	GO:0006099: tricarboxylic acid cycle	9.76E-03
104	GO:0009682: induced systemic resistance	1.04E-02
105	GO:0019684: photosynthesis, light reaction	1.04E-02
106	GO:0009089: lysine biosynthetic process via diaminopimelate	1.04E-02
107	GO:0006631: fatty acid metabolic process	1.11E-02
108	GO:0006790: sulfur compound metabolic process	1.14E-02
109	GO:0002213: defense response to insect	1.14E-02
110	GO:0030048: actin filament-based movement	1.25E-02
111	GO:0006626: protein targeting to mitochondrion	1.25E-02
112	GO:0006108: malate metabolic process	1.25E-02
113	GO:0055046: microgametogenesis	1.25E-02
114	GO:0009718: anthocyanin-containing compound biosynthetic process	1.25E-02
115	GO:0048467: gynoecium development	1.36E-02
116	GO:0010143: cutin biosynthetic process	1.36E-02
117	GO:0002237: response to molecule of bacterial origin	1.36E-02
118	GO:0006855: drug transmembrane transport	1.41E-02
119	GO:0009225: nucleotide-sugar metabolic process	1.48E-02
120	GO:0007030: Golgi organization	1.48E-02
121	GO:0070588: calcium ion transmembrane transport	1.48E-02
122	GO:0046854: phosphatidylinositol phosphorylation	1.48E-02
123	GO:0042538: hyperosmotic salinity response	1.52E-02
124	GO:0055114: oxidation-reduction process	1.54E-02
125	GO:0046686: response to cadmium ion	1.54E-02
126	GO:0010025: wax biosynthetic process	1.60E-02
127	GO:0030150: protein import into mitochondrial matrix	1.72E-02
128	GO:2000377: regulation of reactive oxygen species metabolic process	1.72E-02
129	GO:0005992: trehalose biosynthetic process	1.72E-02
130	GO:0006874: cellular calcium ion homeostasis	1.84E-02
131	GO:0003333: amino acid transmembrane transport	1.97E-02
132	GO:0006979: response to oxidative stress	2.00E-02
133	GO:0010200: response to chitin	2.05E-02
134	GO:0009611: response to wounding	2.08E-02
135	GO:0006730: one-carbon metabolic process	2.10E-02
136	GO:0030433: ubiquitin-dependent ERAD pathway	2.10E-02
137	GO:0009693: ethylene biosynthetic process	2.23E-02
138	GO:0010227: floral organ abscission	2.23E-02
139	GO:0006012: galactose metabolic process	2.23E-02
140	GO:0009561: megagametogenesis	2.37E-02
141	GO:0009306: protein secretion	2.37E-02
142	GO:0006885: regulation of pH	2.80E-02
143	GO:0048544: recognition of pollen	2.95E-02
144	GO:0042752: regulation of circadian rhythm	2.95E-02
145	GO:0016042: lipid catabolic process	3.09E-02
146	GO:0006623: protein targeting to vacuole	3.10E-02
147	GO:0002229: defense response to oomycetes	3.25E-02
148	GO:0010193: response to ozone	3.25E-02
149	GO:0030163: protein catabolic process	3.57E-02
150	GO:0071281: cellular response to iron ion	3.57E-02
151	GO:0010090: trichome morphogenesis	3.57E-02
152	GO:0016310: phosphorylation	3.60E-02
153	GO:0006633: fatty acid biosynthetic process	3.65E-02
154	GO:0006914: autophagy	3.73E-02
155	GO:0040008: regulation of growth	3.83E-02
156	GO:0006904: vesicle docking involved in exocytosis	3.89E-02
157	GO:0009816: defense response to bacterium, incompatible interaction	4.40E-02
158	GO:0009607: response to biotic stimulus	4.40E-02
159	GO:0006950: response to stress	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0004370: glycerol kinase activity	0.00E+00
2	GO:1990837: sequence-specific double-stranded DNA binding	0.00E+00
3	GO:0004674: protein serine/threonine kinase activity	2.64E-05
4	GO:0016301: kinase activity	5.65E-05
5	GO:0010279: indole-3-acetic acid amido synthetase activity	6.70E-05
6	GO:0005496: steroid binding	1.05E-04
7	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.51E-04
8	GO:0102391: decanoate--CoA ligase activity	2.07E-04
9	GO:0005524: ATP binding	2.12E-04
10	GO:0004467: long-chain fatty acid-CoA ligase activity	2.70E-04
11	GO:0031957: very long-chain fatty acid-CoA ligase activity	3.24E-04
12	GO:0019707: protein-cysteine S-acyltransferase activity	3.24E-04
13	GO:0010285: L,L-diaminopimelate aminotransferase activity	3.24E-04
14	GO:0050577: GDP-L-fucose synthase activity	3.24E-04
15	GO:0045309: protein phosphorylated amino acid binding	5.92E-04
16	GO:0019779: Atg8 activating enzyme activity	7.07E-04
17	GO:0030742: GTP-dependent protein binding	7.07E-04
18	GO:0050736: O-malonyltransferase activity	7.07E-04
19	GO:0019200: carbohydrate kinase activity	7.07E-04
20	GO:0042937: tripeptide transporter activity	7.07E-04
21	GO:0032454: histone demethylase activity (H3-K9 specific)	7.07E-04
22	GO:0004103: choline kinase activity	7.07E-04
23	GO:0050291: sphingosine N-acyltransferase activity	7.07E-04
24	GO:0010297: heteropolysaccharide binding	7.07E-04
25	GO:0019904: protein domain specific binding	7.96E-04
26	GO:0050660: flavin adenine dinucleotide binding	9.51E-04
27	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.15E-03
28	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	1.15E-03
29	GO:0004383: guanylate cyclase activity	1.15E-03
30	GO:0016805: dipeptidase activity	1.15E-03
31	GO:0005457: GDP-fucose transmembrane transporter activity	1.15E-03
32	GO:0004478: methionine adenosyltransferase activity	1.15E-03
33	GO:0030145: manganese ion binding	1.20E-03
34	GO:0015181: arginine transmembrane transporter activity	1.65E-03
35	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.65E-03
36	GO:0042299: lupeol synthase activity	1.65E-03
37	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.65E-03
38	GO:0004351: glutamate decarboxylase activity	1.65E-03
39	GO:0015189: L-lysine transmembrane transporter activity	1.65E-03
40	GO:0005313: L-glutamate transmembrane transporter activity	2.21E-03
41	GO:0016866: intramolecular transferase activity	2.21E-03
42	GO:0050373: UDP-arabinose 4-epimerase activity	2.21E-03
43	GO:0042936: dipeptide transporter activity	2.21E-03
44	GO:0009055: electron carrier activity	2.41E-03
45	GO:0005452: inorganic anion exchanger activity	2.82E-03
46	GO:0017137: Rab GTPase binding	2.82E-03
47	GO:0004040: amidase activity	2.82E-03
48	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	2.82E-03
49	GO:0045431: flavonol synthase activity	2.82E-03
50	GO:0015301: anion:anion antiporter activity	2.82E-03
51	GO:0047714: galactolipase activity	3.49E-03
52	GO:0016615: malate dehydrogenase activity	3.49E-03
53	GO:0004866: endopeptidase inhibitor activity	3.49E-03
54	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.20E-03
55	GO:0030060: L-malate dehydrogenase activity	4.20E-03
56	GO:0003978: UDP-glucose 4-epimerase activity	4.20E-03
57	GO:0004656: procollagen-proline 4-dioxygenase activity	4.20E-03
58	GO:0008235: metalloexopeptidase activity	4.95E-03
59	GO:0004620: phospholipase activity	4.95E-03
60	GO:0052747: sinapyl alcohol dehydrogenase activity	5.76E-03
61	GO:0004714: transmembrane receptor protein tyrosine kinase activity	5.76E-03
62	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	6.60E-03
63	GO:0030247: polysaccharide binding	6.63E-03
64	GO:0015238: drug transmembrane transporter activity	7.73E-03
65	GO:0015297: antiporter activity	8.09E-03
66	GO:0004743: pyruvate kinase activity	8.41E-03
67	GO:0015174: basic amino acid transmembrane transporter activity	8.41E-03
68	GO:0047617: acyl-CoA hydrolase activity	8.41E-03
69	GO:0031490: chromatin DNA binding	8.41E-03
70	GO:0030955: potassium ion binding	8.41E-03
71	GO:0016844: strictosidine synthase activity	8.41E-03
72	GO:0030234: enzyme regulator activity	9.37E-03
73	GO:0004568: chitinase activity	9.37E-03
74	GO:0004177: aminopeptidase activity	1.04E-02
75	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.14E-02
76	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.14E-02
77	GO:0004364: glutathione transferase activity	1.16E-02
78	GO:0005516: calmodulin binding	1.19E-02
79	GO:0015114: phosphate ion transmembrane transporter activity	1.25E-02
80	GO:0005388: calcium-transporting ATPase activity	1.25E-02
81	GO:0015266: protein channel activity	1.25E-02
82	GO:0004022: alcohol dehydrogenase (NAD) activity	1.25E-02
83	GO:0019888: protein phosphatase regulator activity	1.25E-02
84	GO:0003774: motor activity	1.36E-02
85	GO:0005217: intracellular ligand-gated ion channel activity	1.48E-02
86	GO:0004970: ionotropic glutamate receptor activity	1.48E-02
87	GO:0004867: serine-type endopeptidase inhibitor activity	1.48E-02
88	GO:0001046: core promoter sequence-specific DNA binding	1.72E-02
89	GO:0031418: L-ascorbic acid binding	1.72E-02
90	GO:0045735: nutrient reservoir activity	1.93E-02
91	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.97E-02
92	GO:0052689: carboxylic ester hydrolase activity	2.23E-02
93	GO:0003779: actin binding	2.26E-02
94	GO:0004499: N,N-dimethylaniline monooxygenase activity	2.37E-02
95	GO:0015035: protein disulfide oxidoreductase activity	2.39E-02
96	GO:0005451: monovalent cation:proton antiporter activity	2.65E-02
97	GO:0015299: solute:proton antiporter activity	2.95E-02
98	GO:0050662: coenzyme binding	2.95E-02
99	GO:0016853: isomerase activity	2.95E-02
100	GO:0030246: carbohydrate binding	3.12E-02
101	GO:0030170: pyridoxal phosphate binding	3.23E-02
102	GO:0015385: sodium:proton antiporter activity	3.57E-02
103	GO:0008483: transaminase activity	3.89E-02
104	GO:0008237: metallopeptidase activity	3.89E-02
105	GO:0004806: triglyceride lipase activity	4.75E-02
106	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.92E-02
107	GO:0005509: calcium ion binding	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.01E-07
2	GO:0016021: integral component of membrane	3.92E-06
3	GO:0005911: cell-cell junction	3.24E-04
4	GO:0000138: Golgi trans cisterna	3.24E-04
5	GO:0070062: extracellular exosome	1.65E-03
6	GO:0005770: late endosome	3.16E-03
7	GO:0030173: integral component of Golgi membrane	4.20E-03
8	GO:0005794: Golgi apparatus	4.72E-03
9	GO:0005783: endoplasmic reticulum	5.36E-03
10	GO:0031305: integral component of mitochondrial inner membrane	5.76E-03
11	GO:0031901: early endosome membrane	7.48E-03
12	GO:0016459: myosin complex	9.37E-03
13	GO:0008541: proteasome regulatory particle, lid subcomplex	1.04E-02
14	GO:0005769: early endosome	1.60E-02
15	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.37E-02
16	GO:0005829: cytosol	2.78E-02
17	GO:0009543: chloroplast thylakoid lumen	2.91E-02
18	GO:0019898: extrinsic component of membrane	3.10E-02
19	GO:0000785: chromatin	3.41E-02
20	GO:0000145: exocyst	3.41E-02
21	GO:0071944: cell periphery	3.57E-02
22	GO:0005576: extracellular region	3.62E-02
23	GO:0032580: Golgi cisterna membrane	3.73E-02
24	GO:0005802: trans-Golgi network	4.02E-02