GO Enrichment Analysis of Co-expressed Genes with
AT2G39010
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042425: choline biosynthetic process | 0.00E+00 |
| 2 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
| 3 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
| 4 | GO:0090391: granum assembly | 1.89E-06 |
| 5 | GO:0080170: hydrogen peroxide transmembrane transport | 4.47E-06 |
| 6 | GO:0010196: nonphotochemical quenching | 4.14E-05 |
| 7 | GO:0008610: lipid biosynthetic process | 5.40E-05 |
| 8 | GO:1904964: positive regulation of phytol biosynthetic process | 9.69E-05 |
| 9 | GO:0010028: xanthophyll cycle | 9.69E-05 |
| 10 | GO:0015936: coenzyme A metabolic process | 9.69E-05 |
| 11 | GO:1904966: positive regulation of vitamin E biosynthetic process | 9.69E-05 |
| 12 | GO:0010207: photosystem II assembly | 2.19E-04 |
| 13 | GO:0016122: xanthophyll metabolic process | 2.28E-04 |
| 14 | GO:0010289: homogalacturonan biosynthetic process | 2.28E-04 |
| 15 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.28E-04 |
| 16 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.28E-04 |
| 17 | GO:0035304: regulation of protein dephosphorylation | 2.28E-04 |
| 18 | GO:0043255: regulation of carbohydrate biosynthetic process | 2.28E-04 |
| 19 | GO:0048281: inflorescence morphogenesis | 3.80E-04 |
| 20 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 3.80E-04 |
| 21 | GO:0015979: photosynthesis | 4.29E-04 |
| 22 | GO:0051513: regulation of monopolar cell growth | 5.46E-04 |
| 23 | GO:0010148: transpiration | 5.46E-04 |
| 24 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 5.46E-04 |
| 25 | GO:1901332: negative regulation of lateral root development | 5.46E-04 |
| 26 | GO:0034220: ion transmembrane transport | 5.67E-04 |
| 27 | GO:0009765: photosynthesis, light harvesting | 7.26E-04 |
| 28 | GO:0015994: chlorophyll metabolic process | 7.26E-04 |
| 29 | GO:0030104: water homeostasis | 7.26E-04 |
| 30 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 7.26E-04 |
| 31 | GO:0045038: protein import into chloroplast thylakoid membrane | 9.17E-04 |
| 32 | GO:0006656: phosphatidylcholine biosynthetic process | 9.17E-04 |
| 33 | GO:0010027: thylakoid membrane organization | 1.06E-03 |
| 34 | GO:0006751: glutathione catabolic process | 1.12E-03 |
| 35 | GO:0042549: photosystem II stabilization | 1.12E-03 |
| 36 | GO:0009913: epidermal cell differentiation | 1.12E-03 |
| 37 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.12E-03 |
| 38 | GO:0010337: regulation of salicylic acid metabolic process | 1.12E-03 |
| 39 | GO:0015995: chlorophyll biosynthetic process | 1.24E-03 |
| 40 | GO:0009416: response to light stimulus | 1.50E-03 |
| 41 | GO:0015693: magnesium ion transport | 1.57E-03 |
| 42 | GO:0010103: stomatal complex morphogenesis | 1.57E-03 |
| 43 | GO:0048528: post-embryonic root development | 1.57E-03 |
| 44 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.57E-03 |
| 45 | GO:0070370: cellular heat acclimation | 1.57E-03 |
| 46 | GO:1900057: positive regulation of leaf senescence | 1.57E-03 |
| 47 | GO:0016051: carbohydrate biosynthetic process | 1.72E-03 |
| 48 | GO:0001558: regulation of cell growth | 2.07E-03 |
| 49 | GO:0080167: response to karrikin | 2.25E-03 |
| 50 | GO:0010205: photoinhibition | 2.61E-03 |
| 51 | GO:0009638: phototropism | 2.61E-03 |
| 52 | GO:0009664: plant-type cell wall organization | 2.76E-03 |
| 53 | GO:0055062: phosphate ion homeostasis | 2.90E-03 |
| 54 | GO:0006535: cysteine biosynthetic process from serine | 2.90E-03 |
| 55 | GO:0006032: chitin catabolic process | 2.90E-03 |
| 56 | GO:0000038: very long-chain fatty acid metabolic process | 3.20E-03 |
| 57 | GO:0019684: photosynthesis, light reaction | 3.20E-03 |
| 58 | GO:1903507: negative regulation of nucleic acid-templated transcription | 3.20E-03 |
| 59 | GO:0016024: CDP-diacylglycerol biosynthetic process | 3.50E-03 |
| 60 | GO:0016042: lipid catabolic process | 3.55E-03 |
| 61 | GO:0009718: anthocyanin-containing compound biosynthetic process | 3.82E-03 |
| 62 | GO:0009785: blue light signaling pathway | 3.82E-03 |
| 63 | GO:0010053: root epidermal cell differentiation | 4.49E-03 |
| 64 | GO:0009825: multidimensional cell growth | 4.49E-03 |
| 65 | GO:0010167: response to nitrate | 4.49E-03 |
| 66 | GO:0006833: water transport | 4.83E-03 |
| 67 | GO:0010025: wax biosynthetic process | 4.83E-03 |
| 68 | GO:0019344: cysteine biosynthetic process | 5.19E-03 |
| 69 | GO:0009944: polarity specification of adaxial/abaxial axis | 5.19E-03 |
| 70 | GO:0051302: regulation of cell division | 5.55E-03 |
| 71 | GO:0019953: sexual reproduction | 5.55E-03 |
| 72 | GO:0008299: isoprenoid biosynthetic process | 5.55E-03 |
| 73 | GO:0007017: microtubule-based process | 5.55E-03 |
| 74 | GO:0009695: jasmonic acid biosynthetic process | 5.55E-03 |
| 75 | GO:0016998: cell wall macromolecule catabolic process | 5.93E-03 |
| 76 | GO:0031408: oxylipin biosynthetic process | 5.93E-03 |
| 77 | GO:0042744: hydrogen peroxide catabolic process | 5.98E-03 |
| 78 | GO:0035428: hexose transmembrane transport | 6.31E-03 |
| 79 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 6.31E-03 |
| 80 | GO:0001944: vasculature development | 6.70E-03 |
| 81 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 6.70E-03 |
| 82 | GO:0009735: response to cytokinin | 6.79E-03 |
| 83 | GO:0006810: transport | 7.84E-03 |
| 84 | GO:0080022: primary root development | 7.93E-03 |
| 85 | GO:0000413: protein peptidyl-prolyl isomerization | 7.93E-03 |
| 86 | GO:0042335: cuticle development | 7.93E-03 |
| 87 | GO:0009651: response to salt stress | 8.19E-03 |
| 88 | GO:0005975: carbohydrate metabolic process | 8.24E-03 |
| 89 | GO:0046323: glucose import | 8.35E-03 |
| 90 | GO:0010183: pollen tube guidance | 9.23E-03 |
| 91 | GO:0071554: cell wall organization or biogenesis | 9.68E-03 |
| 92 | GO:0055085: transmembrane transport | 1.03E-02 |
| 93 | GO:0009826: unidimensional cell growth | 1.08E-02 |
| 94 | GO:0009828: plant-type cell wall loosening | 1.11E-02 |
| 95 | GO:0009567: double fertilization forming a zygote and endosperm | 1.11E-02 |
| 96 | GO:0051607: defense response to virus | 1.20E-02 |
| 97 | GO:0009860: pollen tube growth | 1.21E-02 |
| 98 | GO:0016126: sterol biosynthetic process | 1.25E-02 |
| 99 | GO:0018298: protein-chromophore linkage | 1.51E-02 |
| 100 | GO:0030244: cellulose biosynthetic process | 1.51E-02 |
| 101 | GO:0010311: lateral root formation | 1.57E-02 |
| 102 | GO:0006869: lipid transport | 1.83E-02 |
| 103 | GO:0032259: methylation | 1.97E-02 |
| 104 | GO:0006631: fatty acid metabolic process | 2.02E-02 |
| 105 | GO:0009408: response to heat | 2.06E-02 |
| 106 | GO:0009965: leaf morphogenesis | 2.33E-02 |
| 107 | GO:0031347: regulation of defense response | 2.46E-02 |
| 108 | GO:0009809: lignin biosynthetic process | 2.65E-02 |
| 109 | GO:0009409: response to cold | 2.73E-02 |
| 110 | GO:0009734: auxin-activated signaling pathway | 2.90E-02 |
| 111 | GO:0045893: positive regulation of transcription, DNA-templated | 4.19E-02 |
| 112 | GO:0007165: signal transduction | 4.63E-02 |
| 113 | GO:0006633: fatty acid biosynthetic process | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0005048: signal sequence binding | 0.00E+00 |
| 3 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 4 | GO:0050139: nicotinate-N-glucosyltransferase activity | 9.69E-05 |
| 5 | GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity | 9.69E-05 |
| 6 | GO:0042282: hydroxymethylglutaryl-CoA reductase activity | 9.69E-05 |
| 7 | GO:0010242: oxygen evolving activity | 9.69E-05 |
| 8 | GO:0004321: fatty-acyl-CoA synthase activity | 9.69E-05 |
| 9 | GO:0004565: beta-galactosidase activity | 1.93E-04 |
| 10 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 2.28E-04 |
| 11 | GO:0003839: gamma-glutamylcyclotransferase activity | 2.28E-04 |
| 12 | GO:0004751: ribose-5-phosphate isomerase activity | 3.80E-04 |
| 13 | GO:0016746: transferase activity, transferring acyl groups | 5.24E-04 |
| 14 | GO:0001872: (1->3)-beta-D-glucan binding | 5.46E-04 |
| 15 | GO:0016851: magnesium chelatase activity | 5.46E-04 |
| 16 | GO:0042277: peptide binding | 7.26E-04 |
| 17 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 7.26E-04 |
| 18 | GO:0019199: transmembrane receptor protein kinase activity | 7.26E-04 |
| 19 | GO:0043495: protein anchor | 7.26E-04 |
| 20 | GO:0015250: water channel activity | 1.06E-03 |
| 21 | GO:0042578: phosphoric ester hydrolase activity | 1.12E-03 |
| 22 | GO:0016168: chlorophyll binding | 1.12E-03 |
| 23 | GO:0030247: polysaccharide binding | 1.24E-03 |
| 24 | GO:0004124: cysteine synthase activity | 1.34E-03 |
| 25 | GO:0004620: phospholipase activity | 1.57E-03 |
| 26 | GO:0019899: enzyme binding | 1.57E-03 |
| 27 | GO:0008312: 7S RNA binding | 1.81E-03 |
| 28 | GO:0016207: 4-coumarate-CoA ligase activity | 2.33E-03 |
| 29 | GO:0052689: carboxylic ester hydrolase activity | 2.55E-03 |
| 30 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.57E-03 |
| 31 | GO:0004568: chitinase activity | 2.90E-03 |
| 32 | GO:0015020: glucuronosyltransferase activity | 2.90E-03 |
| 33 | GO:0047372: acylglycerol lipase activity | 3.20E-03 |
| 34 | GO:0015095: magnesium ion transmembrane transporter activity | 3.82E-03 |
| 35 | GO:0008266: poly(U) RNA binding | 4.15E-03 |
| 36 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 4.83E-03 |
| 37 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 4.83E-03 |
| 38 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 4.83E-03 |
| 39 | GO:0005528: FK506 binding | 5.19E-03 |
| 40 | GO:0003714: transcription corepressor activity | 5.19E-03 |
| 41 | GO:0005515: protein binding | 5.47E-03 |
| 42 | GO:0043424: protein histidine kinase binding | 5.55E-03 |
| 43 | GO:0016829: lyase activity | 5.68E-03 |
| 44 | GO:0004252: serine-type endopeptidase activity | 5.83E-03 |
| 45 | GO:0004707: MAP kinase activity | 5.93E-03 |
| 46 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 6.31E-03 |
| 47 | GO:0022891: substrate-specific transmembrane transporter activity | 6.70E-03 |
| 48 | GO:0030570: pectate lyase activity | 6.70E-03 |
| 49 | GO:0005355: glucose transmembrane transporter activity | 8.79E-03 |
| 50 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 9.20E-03 |
| 51 | GO:0042802: identical protein binding | 9.20E-03 |
| 52 | GO:0008168: methyltransferase activity | 1.08E-02 |
| 53 | GO:0004601: peroxidase activity | 1.12E-02 |
| 54 | GO:0016788: hydrolase activity, acting on ester bonds | 1.14E-02 |
| 55 | GO:0005200: structural constituent of cytoskeleton | 1.16E-02 |
| 56 | GO:0016413: O-acetyltransferase activity | 1.20E-02 |
| 57 | GO:0008375: acetylglucosaminyltransferase activity | 1.36E-02 |
| 58 | GO:0005525: GTP binding | 1.43E-02 |
| 59 | GO:0008236: serine-type peptidase activity | 1.46E-02 |
| 60 | GO:0004871: signal transducer activity | 1.75E-02 |
| 61 | GO:0003746: translation elongation factor activity | 1.79E-02 |
| 62 | GO:0003993: acid phosphatase activity | 1.85E-02 |
| 63 | GO:0050661: NADP binding | 1.96E-02 |
| 64 | GO:0003924: GTPase activity | 2.06E-02 |
| 65 | GO:0016298: lipase activity | 2.72E-02 |
| 66 | GO:0031625: ubiquitin protein ligase binding | 2.85E-02 |
| 67 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.19E-02 |
| 68 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.19E-02 |
| 69 | GO:0004650: polygalacturonase activity | 3.19E-02 |
| 70 | GO:0016874: ligase activity | 3.26E-02 |
| 71 | GO:0022857: transmembrane transporter activity | 3.26E-02 |
| 72 | GO:0030170: pyridoxal phosphate binding | 4.30E-02 |
| 73 | GO:0015144: carbohydrate transmembrane transporter activity | 4.54E-02 |
| 74 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.78E-02 |
| 75 | GO:0016787: hydrolase activity | 4.79E-02 |
| 76 | GO:0030246: carbohydrate binding | 4.89E-02 |
| 77 | GO:0005351: sugar:proton symporter activity | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009534: chloroplast thylakoid | 3.07E-12 |
| 3 | GO:0009507: chloroplast | 2.17E-10 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 7.00E-08 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 1.22E-07 |
| 6 | GO:0031977: thylakoid lumen | 2.69E-07 |
| 7 | GO:0009579: thylakoid | 5.82E-06 |
| 8 | GO:0009570: chloroplast stroma | 6.24E-05 |
| 9 | GO:0043674: columella | 9.69E-05 |
| 10 | GO:0030095: chloroplast photosystem II | 2.19E-04 |
| 11 | GO:0080085: signal recognition particle, chloroplast targeting | 2.28E-04 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 3.41E-04 |
| 13 | GO:0010007: magnesium chelatase complex | 3.80E-04 |
| 14 | GO:0009509: chromoplast | 3.80E-04 |
| 15 | GO:0016020: membrane | 3.82E-04 |
| 16 | GO:0005773: vacuole | 5.39E-04 |
| 17 | GO:0015630: microtubule cytoskeleton | 5.46E-04 |
| 18 | GO:0019898: extrinsic component of membrane | 6.99E-04 |
| 19 | GO:0016021: integral component of membrane | 8.09E-04 |
| 20 | GO:0005618: cell wall | 9.50E-04 |
| 21 | GO:0009941: chloroplast envelope | 1.38E-03 |
| 22 | GO:0009533: chloroplast stromal thylakoid | 1.57E-03 |
| 23 | GO:0042807: central vacuole | 1.57E-03 |
| 24 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.07E-03 |
| 25 | GO:0031969: chloroplast membrane | 2.25E-03 |
| 26 | GO:0008180: COP9 signalosome | 2.33E-03 |
| 27 | GO:0048046: apoplast | 2.77E-03 |
| 28 | GO:0005576: extracellular region | 3.54E-03 |
| 29 | GO:0010287: plastoglobule | 4.98E-03 |
| 30 | GO:0042651: thylakoid membrane | 5.55E-03 |
| 31 | GO:0009505: plant-type cell wall | 6.16E-03 |
| 32 | GO:0009522: photosystem I | 8.79E-03 |
| 33 | GO:0009523: photosystem II | 9.23E-03 |
| 34 | GO:0005794: Golgi apparatus | 9.63E-03 |
| 35 | GO:0005802: trans-Golgi network | 1.39E-02 |
| 36 | GO:0019005: SCF ubiquitin ligase complex | 1.51E-02 |
| 37 | GO:0005768: endosome | 1.63E-02 |
| 38 | GO:0000502: proteasome complex | 2.65E-02 |
| 39 | GO:0000139: Golgi membrane | 2.73E-02 |
| 40 | GO:0005887: integral component of plasma membrane | 2.80E-02 |