co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G38960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
2	GO:0080053: response to phenylalanine	0.00E+00
3	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
4	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
5	GO:0006182: cGMP biosynthetic process	0.00E+00
6	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
7	GO:0043201: response to leucine	0.00E+00
8	GO:0080052: response to histidine	0.00E+00
9	GO:0006952: defense response	1.03E-06
10	GO:0006468: protein phosphorylation	1.42E-06
11	GO:0042742: defense response to bacterium	2.34E-06
12	GO:0007166: cell surface receptor signaling pathway	1.11E-05
13	GO:0009617: response to bacterium	1.26E-04
14	GO:0018343: protein farnesylation	2.04E-04
15	GO:0002143: tRNA wobble position uridine thiolation	2.04E-04
16	GO:0042759: long-chain fatty acid biosynthetic process	2.04E-04
17	GO:0009968: negative regulation of signal transduction	2.04E-04
18	GO:0043547: positive regulation of GTPase activity	2.04E-04
19	GO:1990641: response to iron ion starvation	2.04E-04
20	GO:0006422: aspartyl-tRNA aminoacylation	2.04E-04
21	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	2.04E-04
22	GO:0009682: induced systemic resistance	4.16E-04
23	GO:0006101: citrate metabolic process	4.57E-04
24	GO:0019483: beta-alanine biosynthetic process	4.57E-04
25	GO:0042939: tripeptide transport	4.57E-04
26	GO:1902000: homogentisate catabolic process	4.57E-04
27	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	4.57E-04
28	GO:0006212: uracil catabolic process	4.57E-04
29	GO:0006499: N-terminal protein myristoylation	4.93E-04
30	GO:0009407: toxin catabolic process	4.93E-04
31	GO:0032259: methylation	6.05E-04
32	GO:0070588: calcium ion transmembrane transport	6.82E-04
33	GO:0018342: protein prenylation	7.44E-04
34	GO:0009072: aromatic amino acid family metabolic process	7.44E-04
35	GO:0010498: proteasomal protein catabolic process	7.44E-04
36	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	7.44E-04
37	GO:0080147: root hair cell development	8.38E-04
38	GO:0009636: response to toxic substance	9.35E-04
39	GO:0016998: cell wall macromolecule catabolic process	1.01E-03
40	GO:0033014: tetrapyrrole biosynthetic process	1.06E-03
41	GO:0071323: cellular response to chitin	1.06E-03
42	GO:0046513: ceramide biosynthetic process	1.06E-03
43	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.06E-03
44	GO:0019438: aromatic compound biosynthetic process	1.06E-03
45	GO:0071456: cellular response to hypoxia	1.10E-03
46	GO:0042127: regulation of cell proliferation	1.30E-03
47	GO:0042938: dipeptide transport	1.41E-03
48	GO:0009620: response to fungus	1.62E-03
49	GO:0050832: defense response to fungus	1.68E-03
50	GO:0030041: actin filament polymerization	1.80E-03
51	GO:0006097: glyoxylate cycle	1.80E-03
52	GO:0006461: protein complex assembly	1.80E-03
53	GO:0007029: endoplasmic reticulum organization	1.80E-03
54	GO:0030308: negative regulation of cell growth	1.80E-03
55	GO:0009749: response to glucose	1.88E-03
56	GO:0009851: auxin biosynthetic process	1.88E-03
57	GO:1900425: negative regulation of defense response to bacterium	2.21E-03
58	GO:0002238: response to molecule of fungal origin	2.21E-03
59	GO:0006014: D-ribose metabolic process	2.21E-03
60	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	2.21E-03
61	GO:0009737: response to abscisic acid	2.44E-03
62	GO:0009612: response to mechanical stimulus	2.66E-03
63	GO:0010555: response to mannitol	2.66E-03
64	GO:2000067: regulation of root morphogenesis	2.66E-03
65	GO:0000911: cytokinesis by cell plate formation	2.66E-03
66	GO:0006400: tRNA modification	3.13E-03
67	GO:1902074: response to salt	3.13E-03
68	GO:0000338: protein deneddylation	3.13E-03
69	GO:1900150: regulation of defense response to fungus	3.63E-03
70	GO:0006102: isocitrate metabolic process	3.63E-03
71	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.63E-03
72	GO:0009819: drought recovery	3.63E-03
73	GO:0008219: cell death	3.76E-03
74	GO:0046686: response to cadmium ion	4.11E-03
75	GO:0010120: camalexin biosynthetic process	4.15E-03
76	GO:0043562: cellular response to nitrogen levels	4.15E-03
77	GO:0009808: lignin metabolic process	4.15E-03
78	GO:0006972: hyperosmotic response	4.15E-03
79	GO:0007186: G-protein coupled receptor signaling pathway	4.15E-03
80	GO:0009821: alkaloid biosynthetic process	4.70E-03
81	GO:0006783: heme biosynthetic process	4.70E-03
82	GO:0006099: tricarboxylic acid cycle	4.98E-03
83	GO:0006032: chitin catabolic process	5.86E-03
84	GO:0009688: abscisic acid biosynthetic process	5.86E-03
85	GO:0051707: response to other organism	6.13E-03
86	GO:0009750: response to fructose	6.48E-03
87	GO:0030148: sphingolipid biosynthetic process	6.48E-03
88	GO:0052544: defense response by callose deposition in cell wall	6.48E-03
89	GO:0000266: mitochondrial fission	7.12E-03
90	GO:0002213: defense response to insect	7.12E-03
91	GO:0009846: pollen germination	7.70E-03
92	GO:0042538: hyperosmotic salinity response	7.70E-03
93	GO:0006807: nitrogen compound metabolic process	7.78E-03
94	GO:0006626: protein targeting to mitochondrion	7.78E-03
95	GO:0055046: microgametogenesis	7.78E-03
96	GO:0009809: lignin biosynthetic process	8.27E-03
97	GO:0009934: regulation of meristem structural organization	8.47E-03
98	GO:0042343: indole glucosinolate metabolic process	9.17E-03
99	GO:0000162: tryptophan biosynthetic process	9.90E-03
100	GO:2000377: regulation of reactive oxygen species metabolic process	1.06E-02
101	GO:0006874: cellular calcium ion homeostasis	1.14E-02
102	GO:0003333: amino acid transmembrane transport	1.22E-02
103	GO:0098542: defense response to other organism	1.22E-02
104	GO:0030433: ubiquitin-dependent ERAD pathway	1.30E-02
105	GO:0009751: response to salicylic acid	1.35E-02
106	GO:0006012: galactose metabolic process	1.38E-02
107	GO:0010584: pollen exine formation	1.47E-02
108	GO:0009561: megagametogenesis	1.47E-02
109	GO:0010182: sugar mediated signaling pathway	1.73E-02
110	GO:0048544: recognition of pollen	1.82E-02
111	GO:0061025: membrane fusion	1.82E-02
112	GO:0009646: response to absence of light	1.82E-02
113	GO:0019252: starch biosynthetic process	1.92E-02
114	GO:0002229: defense response to oomycetes	2.01E-02
115	GO:0016032: viral process	2.11E-02
116	GO:0009630: gravitropism	2.11E-02
117	GO:0006979: response to oxidative stress	2.13E-02
118	GO:0030163: protein catabolic process	2.21E-02
119	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.29E-02
120	GO:0006904: vesicle docking involved in exocytosis	2.41E-02
121	GO:0009615: response to virus	2.61E-02
122	GO:0009607: response to biotic stimulus	2.72E-02
123	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.72E-02
124	GO:0016310: phosphorylation	2.86E-02
125	GO:0009611: response to wounding	2.90E-02
126	GO:0015995: chlorophyll biosynthetic process	2.94E-02
127	GO:0016049: cell growth	3.05E-02
128	GO:0009817: defense response to fungus, incompatible interaction	3.16E-02
129	GO:0009813: flavonoid biosynthetic process	3.27E-02
130	GO:0007568: aging	3.50E-02
131	GO:0006865: amino acid transport	3.62E-02
132	GO:0045087: innate immune response	3.74E-02
133	GO:0016051: carbohydrate biosynthetic process	3.74E-02
134	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.05E-02
135	GO:0016192: vesicle-mediated transport	4.12E-02
136	GO:0006508: proteolysis	4.14E-02
137	GO:0006887: exocytosis	4.22E-02
138	GO:0044550: secondary metabolite biosynthetic process	4.26E-02
139	GO:0042542: response to hydrogen peroxide	4.35E-02
140	GO:0009640: photomorphogenesis	4.47E-02
141	GO:0009744: response to sucrose	4.47E-02
142	GO:0055114: oxidation-reduction process	4.59E-02
143	GO:0000209: protein polyubiquitination	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0061605: molybdopterin-synthase adenylyltransferase activity	0.00E+00
2	GO:0016504: peptidase activator activity	0.00E+00
3	GO:0004660: protein farnesyltransferase activity	0.00E+00
4	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
5	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
6	GO:0061604: molybdopterin-synthase sulfurtransferase activity	0.00E+00
7	GO:0003837: beta-ureidopropionase activity	0.00E+00
8	GO:0070577: lysine-acetylated histone binding	0.00E+00
9	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
10	GO:0005524: ATP binding	4.91E-06
11	GO:0016301: kinase activity	8.80E-06
12	GO:0004674: protein serine/threonine kinase activity	1.53E-05
13	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	7.46E-05
14	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.04E-04
15	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.04E-04
16	GO:0004815: aspartate-tRNA ligase activity	2.04E-04
17	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	2.04E-04
18	GO:0004325: ferrochelatase activity	2.04E-04
19	GO:0008171: O-methyltransferase activity	3.60E-04
20	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.07E-04
21	GO:0050736: O-malonyltransferase activity	4.57E-04
22	GO:0045140: inositol phosphoceramide synthase activity	4.57E-04
23	GO:0042937: tripeptide transporter activity	4.57E-04
24	GO:0004103: choline kinase activity	4.57E-04
25	GO:0004566: beta-glucuronidase activity	4.57E-04
26	GO:0050291: sphingosine N-acyltransferase activity	4.57E-04
27	GO:0003994: aconitate hydratase activity	4.57E-04
28	GO:0005388: calcium-transporting ATPase activity	5.42E-04
29	GO:0004190: aspartic-type endopeptidase activity	6.82E-04
30	GO:0031683: G-protein beta/gamma-subunit complex binding	7.44E-04
31	GO:0004383: guanylate cyclase activity	7.44E-04
32	GO:0016805: dipeptidase activity	7.44E-04
33	GO:0001664: G-protein coupled receptor binding	7.44E-04
34	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	7.44E-04
35	GO:0008430: selenium binding	7.44E-04
36	GO:0004364: glutathione transferase activity	7.70E-04
37	GO:0004792: thiosulfate sulfurtransferase activity	1.06E-03
38	GO:0043531: ADP binding	1.39E-03
39	GO:0004930: G-protein coupled receptor activity	1.41E-03
40	GO:0070628: proteasome binding	1.41E-03
41	GO:0004031: aldehyde oxidase activity	1.41E-03
42	GO:0050302: indole-3-acetaldehyde oxidase activity	1.41E-03
43	GO:0004834: tryptophan synthase activity	1.41E-03
44	GO:0042936: dipeptide transporter activity	1.41E-03
45	GO:0004040: amidase activity	1.80E-03
46	GO:0005496: steroid binding	1.80E-03
47	GO:0045431: flavonol synthase activity	1.80E-03
48	GO:0008641: small protein activating enzyme activity	1.80E-03
49	GO:0004866: endopeptidase inhibitor activity	2.21E-03
50	GO:0004656: procollagen-proline 4-dioxygenase activity	2.66E-03
51	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.66E-03
52	GO:0004747: ribokinase activity	2.66E-03
53	GO:0008235: metalloexopeptidase activity	3.13E-03
54	GO:0030247: polysaccharide binding	3.40E-03
55	GO:0004033: aldo-keto reductase (NADP) activity	3.63E-03
56	GO:0008865: fructokinase activity	3.63E-03
57	GO:0052747: sinapyl alcohol dehydrogenase activity	3.63E-03
58	GO:0004311: farnesyltranstransferase activity	3.63E-03
59	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.63E-03
60	GO:0004034: aldose 1-epimerase activity	3.63E-03
61	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.35E-03
62	GO:0016844: strictosidine synthase activity	5.27E-03
63	GO:0004568: chitinase activity	5.86E-03
64	GO:0005506: iron ion binding	5.96E-03
65	GO:0008168: methyltransferase activity	6.05E-03
66	GO:0004177: aminopeptidase activity	6.48E-03
67	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.12E-03
68	GO:0004022: alcohol dehydrogenase (NAD) activity	7.78E-03
69	GO:0005262: calcium channel activity	7.78E-03
70	GO:0005217: intracellular ligand-gated ion channel activity	9.17E-03
71	GO:0008061: chitin binding	9.17E-03
72	GO:0004970: ionotropic glutamate receptor activity	9.17E-03
73	GO:0031418: L-ascorbic acid binding	1.06E-02
74	GO:0003954: NADH dehydrogenase activity	1.06E-02
75	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.16E-02
76	GO:0033612: receptor serine/threonine kinase binding	1.22E-02
77	GO:0015035: protein disulfide oxidoreductase activity	1.22E-02
78	GO:0005516: calmodulin binding	1.35E-02
79	GO:0009055: electron carrier activity	1.50E-02
80	GO:0016853: isomerase activity	1.82E-02
81	GO:0005509: calcium ion binding	1.86E-02
82	GO:0005515: protein binding	2.20E-02
83	GO:0004683: calmodulin-dependent protein kinase activity	2.94E-02
84	GO:0016491: oxidoreductase activity	3.15E-02
85	GO:0005096: GTPase activator activity	3.27E-02
86	GO:0030145: manganese ion binding	3.50E-02
87	GO:0050660: flavin adenine dinucleotide binding	3.66E-02
88	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.74E-02
89	GO:0046872: metal ion binding	3.87E-02
90	GO:0051539: 4 iron, 4 sulfur cluster binding	4.10E-02
91	GO:0020037: heme binding	4.10E-02
92	GO:0061630: ubiquitin protein ligase activity	4.12E-02
93	GO:0019825: oxygen binding	4.37E-02
94	GO:0005484: SNAP receptor activity	4.47E-02
95	GO:0051537: 2 iron, 2 sulfur cluster binding	4.73E-02
96	GO:0042803: protein homodimerization activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	7.99E-08
2	GO:0016021: integral component of membrane	2.19E-07
3	GO:0005783: endoplasmic reticulum	1.88E-05
4	GO:0005829: cytosol	2.64E-05
5	GO:0045252: oxoglutarate dehydrogenase complex	2.04E-04
6	GO:0005965: protein farnesyltransferase complex	2.04E-04
7	GO:0005911: cell-cell junction	2.04E-04
8	GO:0005765: lysosomal membrane	4.16E-04
9	GO:0031304: intrinsic component of mitochondrial inner membrane	4.57E-04
10	GO:0070062: extracellular exosome	1.06E-03
11	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.41E-03
12	GO:0030660: Golgi-associated vesicle membrane	1.41E-03
13	GO:0010008: endosome membrane	1.50E-03
14	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.63E-03
15	GO:0005789: endoplasmic reticulum membrane	3.95E-03
16	GO:0008180: COP9 signalosome	4.70E-03
17	GO:0043234: protein complex	9.90E-03
18	GO:0005839: proteasome core complex	1.22E-02
19	GO:0019898: extrinsic component of membrane	1.92E-02
20	GO:0009504: cell plate	1.92E-02
21	GO:0000145: exocyst	2.11E-02
22	GO:0005576: extracellular region	3.67E-02