Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G38780

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
2GO:0090042: tubulin deacetylation0.00E+00
3GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
4GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
5GO:0042820: vitamin B6 catabolic process0.00E+00
6GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
7GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
8GO:0006399: tRNA metabolic process0.00E+00
9GO:0098586: cellular response to virus0.00E+00
10GO:0090470: shoot organ boundary specification0.00E+00
11GO:0017009: protein-phycocyanobilin linkage0.00E+00
12GO:0061635: regulation of protein complex stability0.00E+00
13GO:0042821: pyridoxal biosynthetic process0.00E+00
14GO:0005996: monosaccharide metabolic process0.00E+00
15GO:0009773: photosynthetic electron transport in photosystem I2.11E-11
16GO:0015979: photosynthesis7.93E-07
17GO:0071482: cellular response to light stimulus5.45E-06
18GO:0006000: fructose metabolic process8.46E-06
19GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.93E-05
20GO:0071484: cellular response to light intensity1.93E-05
21GO:0009767: photosynthetic electron transport chain2.77E-05
22GO:0006546: glycine catabolic process3.53E-05
23GO:0018298: protein-chromophore linkage4.24E-05
24GO:0009853: photorespiration6.67E-05
25GO:0042549: photosystem II stabilization8.30E-05
26GO:0006810: transport1.02E-04
27GO:0010196: nonphotochemical quenching1.52E-04
28GO:0055114: oxidation-reduction process1.74E-04
29GO:0009704: de-etiolation1.94E-04
30GO:0030974: thiamine pyrophosphate transport2.22E-04
31GO:0051775: response to redox state2.22E-04
32GO:0071277: cellular response to calcium ion2.22E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process2.22E-04
34GO:0006723: cuticle hydrocarbon biosynthetic process2.22E-04
35GO:1904964: positive regulation of phytol biosynthetic process2.22E-04
36GO:0080093: regulation of photorespiration2.22E-04
37GO:0043609: regulation of carbon utilization2.22E-04
38GO:0031998: regulation of fatty acid beta-oxidation2.22E-04
39GO:0051180: vitamin transport2.22E-04
40GO:0009443: pyridoxal 5'-phosphate salvage2.22E-04
41GO:0006002: fructose 6-phosphate metabolic process2.40E-04
42GO:0009658: chloroplast organization2.71E-04
43GO:0018119: peptidyl-cysteine S-nitrosylation4.69E-04
44GO:0015893: drug transport4.95E-04
45GO:0034755: iron ion transmembrane transport4.95E-04
46GO:0071457: cellular response to ozone4.95E-04
47GO:0009662: etioplast organization4.95E-04
48GO:0097054: L-glutamate biosynthetic process4.95E-04
49GO:0030388: fructose 1,6-bisphosphate metabolic process4.95E-04
50GO:0010270: photosystem II oxygen evolving complex assembly4.95E-04
51GO:0046741: transport of virus in host, tissue to tissue4.95E-04
52GO:1902326: positive regulation of chlorophyll biosynthetic process4.95E-04
53GO:0080005: photosystem stoichiometry adjustment4.95E-04
54GO:0006108: malate metabolic process6.09E-04
55GO:0006094: gluconeogenesis6.09E-04
56GO:0005986: sucrose biosynthetic process6.09E-04
57GO:0043447: alkane biosynthetic process8.05E-04
58GO:0006954: inflammatory response8.05E-04
59GO:0009768: photosynthesis, light harvesting in photosystem I1.03E-03
60GO:0009644: response to high light intensity1.04E-03
61GO:0010731: protein glutathionylation1.15E-03
62GO:0016556: mRNA modification1.15E-03
63GO:0043572: plastid fission1.15E-03
64GO:0055070: copper ion homeostasis1.15E-03
65GO:2001141: regulation of RNA biosynthetic process1.15E-03
66GO:0010371: regulation of gibberellin biosynthetic process1.15E-03
67GO:0009152: purine ribonucleotide biosynthetic process1.15E-03
68GO:0046653: tetrahydrofolate metabolic process1.15E-03
69GO:0006107: oxaloacetate metabolic process1.15E-03
70GO:0006537: glutamate biosynthetic process1.15E-03
71GO:0016226: iron-sulfur cluster assembly1.24E-03
72GO:0006734: NADH metabolic process1.53E-03
73GO:0019676: ammonia assimilation cycle1.53E-03
74GO:0071486: cellular response to high light intensity1.53E-03
75GO:0019464: glycine decarboxylation via glycine cleavage system1.53E-03
76GO:0009765: photosynthesis, light harvesting1.53E-03
77GO:0006109: regulation of carbohydrate metabolic process1.53E-03
78GO:0045727: positive regulation of translation1.53E-03
79GO:0015994: chlorophyll metabolic process1.53E-03
80GO:0042631: cellular response to water deprivation1.71E-03
81GO:0043097: pyrimidine nucleoside salvage1.95E-03
82GO:0010117: photoprotection1.95E-03
83GO:0006564: L-serine biosynthetic process1.95E-03
84GO:0006097: glyoxylate cycle1.95E-03
85GO:0035434: copper ion transmembrane transport1.95E-03
86GO:0006461: protein complex assembly1.95E-03
87GO:0009107: lipoate biosynthetic process1.95E-03
88GO:0071493: cellular response to UV-B1.95E-03
89GO:0010190: cytochrome b6f complex assembly2.40E-03
90GO:0006206: pyrimidine nucleobase metabolic process2.40E-03
91GO:0006828: manganese ion transport2.40E-03
92GO:0006458: 'de novo' protein folding2.89E-03
93GO:0009854: oxidative photosynthetic carbon pathway2.89E-03
94GO:0042026: protein refolding2.89E-03
95GO:0010027: thylakoid membrane organization3.26E-03
96GO:0009645: response to low light intensity stimulus3.40E-03
97GO:0006400: tRNA modification3.40E-03
98GO:0009231: riboflavin biosynthetic process3.94E-03
99GO:0048564: photosystem I assembly3.94E-03
100GO:0008610: lipid biosynthetic process3.94E-03
101GO:0009642: response to light intensity3.94E-03
102GO:0009657: plastid organization4.51E-03
103GO:0032544: plastid translation4.51E-03
104GO:0019430: removal of superoxide radicals4.51E-03
105GO:0090333: regulation of stomatal closure5.11E-03
106GO:0000373: Group II intron splicing5.11E-03
107GO:0009051: pentose-phosphate shunt, oxidative branch5.11E-03
108GO:0006098: pentose-phosphate shunt5.11E-03
109GO:0090305: nucleic acid phosphodiester bond hydrolysis5.11E-03
110GO:0009637: response to blue light5.38E-03
111GO:0006099: tricarboxylic acid cycle5.62E-03
112GO:0010114: response to red light6.93E-03
113GO:0008285: negative regulation of cell proliferation7.06E-03
114GO:0043085: positive regulation of catalytic activity7.06E-03
115GO:0006879: cellular iron ion homeostasis7.06E-03
116GO:0006352: DNA-templated transcription, initiation7.06E-03
117GO:0000272: polysaccharide catabolic process7.06E-03
118GO:0009750: response to fructose7.06E-03
119GO:0006816: calcium ion transport7.06E-03
120GO:0009735: response to cytokinin7.65E-03
121GO:0005983: starch catabolic process7.76E-03
122GO:0009636: response to toxic substance7.80E-03
123GO:0010628: positive regulation of gene expression8.48E-03
124GO:0006006: glucose metabolic process8.48E-03
125GO:0019253: reductive pentose-phosphate cycle9.23E-03
126GO:0010207: photosystem II assembly9.23E-03
127GO:0010020: chloroplast fission9.23E-03
128GO:0006364: rRNA processing9.36E-03
129GO:0010025: wax biosynthetic process1.08E-02
130GO:0045454: cell redox homeostasis1.23E-02
131GO:0007017: microtubule-based process1.24E-02
132GO:0010073: meristem maintenance1.24E-02
133GO:0051302: regulation of cell division1.24E-02
134GO:0016575: histone deacetylation1.24E-02
135GO:0055085: transmembrane transport1.26E-02
136GO:0061077: chaperone-mediated protein folding1.33E-02
137GO:0010227: floral organ abscission1.51E-02
138GO:0032259: methylation1.52E-02
139GO:0009561: megagametogenesis1.60E-02
140GO:0006817: phosphate ion transport1.60E-02
141GO:0016117: carotenoid biosynthetic process1.70E-02
142GO:0009058: biosynthetic process1.77E-02
143GO:0042335: cuticle development1.79E-02
144GO:0006662: glycerol ether metabolic process1.89E-02
145GO:0006520: cellular amino acid metabolic process1.89E-02
146GO:0071472: cellular response to salt stress1.89E-02
147GO:0006814: sodium ion transport1.99E-02
148GO:0019252: starch biosynthetic process2.09E-02
149GO:0006413: translational initiation2.16E-02
150GO:0000302: response to reactive oxygen species2.19E-02
151GO:0048235: pollen sperm cell differentiation2.30E-02
152GO:0007623: circadian rhythm2.31E-02
153GO:0009451: RNA modification2.37E-02
154GO:0010468: regulation of gene expression2.76E-02
155GO:0001666: response to hypoxia2.85E-02
156GO:0016126: sterol biosynthetic process2.85E-02
157GO:0042128: nitrate assimilation3.09E-02
158GO:0016311: dephosphorylation3.32E-02
159GO:0030244: cellulose biosynthetic process3.45E-02
160GO:0010218: response to far red light3.70E-02
161GO:0006499: N-terminal protein myristoylation3.70E-02
162GO:0009407: toxin catabolic process3.70E-02
163GO:0034599: cellular response to oxidative stress4.21E-02
164GO:0006839: mitochondrial transport4.47E-02
165GO:0030001: metal ion transport4.47E-02
166GO:0006457: protein folding4.52E-02
167GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.57E-02
168GO:0009640: photomorphogenesis4.88E-02
169GO:0009744: response to sucrose4.88E-02
170GO:0051707: response to other organism4.88E-02
RankGO TermAdjusted P value
1GO:0042903: tubulin deacetylase activity0.00E+00
2GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
3GO:0004760: serine-pyruvate transaminase activity0.00E+00
4GO:0043014: alpha-tubulin binding0.00E+00
5GO:0008974: phosphoribulokinase activity0.00E+00
6GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
7GO:0008465: glycerate dehydrogenase activity0.00E+00
8GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
9GO:0050281: serine-glyoxylate transaminase activity0.00E+00
10GO:0046608: carotenoid isomerase activity0.00E+00
11GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
12GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
13GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
14GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
15GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
16GO:0051721: protein phosphatase 2A binding0.00E+00
17GO:0016168: chlorophyll binding2.78E-05
18GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.53E-05
19GO:0016615: malate dehydrogenase activity8.30E-05
20GO:0030060: L-malate dehydrogenase activity1.15E-04
21GO:0043022: ribosome binding1.94E-04
22GO:0048038: quinone binding2.19E-04
23GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.22E-04
24GO:0005080: protein kinase C binding2.22E-04
25GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.22E-04
26GO:0008746: NAD(P)+ transhydrogenase activity2.22E-04
27GO:0016041: glutamate synthase (ferredoxin) activity2.22E-04
28GO:0004328: formamidase activity2.22E-04
29GO:0090422: thiamine pyrophosphate transporter activity2.22E-04
30GO:0009496: plastoquinol--plastocyanin reductase activity2.22E-04
31GO:0008967: phosphoglycolate phosphatase activity4.95E-04
32GO:0047746: chlorophyllase activity4.95E-04
33GO:0010297: heteropolysaccharide binding4.95E-04
34GO:0004617: phosphoglycerate dehydrogenase activity4.95E-04
35GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity4.95E-04
36GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.95E-04
37GO:0031072: heat shock protein binding6.09E-04
38GO:0050307: sucrose-phosphate phosphatase activity8.05E-04
39GO:0003935: GTP cyclohydrolase II activity8.05E-04
40GO:0016742: hydroxymethyl-, formyl- and related transferase activity8.05E-04
41GO:0070402: NADPH binding8.05E-04
42GO:0008864: formyltetrahydrofolate deformylase activity8.05E-04
43GO:0016531: copper chaperone activity8.05E-04
44GO:0019829: cation-transporting ATPase activity8.05E-04
45GO:0016992: lipoate synthase activity8.05E-04
46GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity8.05E-04
47GO:0032947: protein complex scaffold8.05E-04
48GO:0031409: pigment binding8.53E-04
49GO:0051536: iron-sulfur cluster binding9.41E-04
50GO:0005528: FK506 binding9.41E-04
51GO:0048487: beta-tubulin binding1.15E-03
52GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.15E-03
53GO:0008508: bile acid:sodium symporter activity1.15E-03
54GO:0004375: glycine dehydrogenase (decarboxylating) activity1.15E-03
55GO:0022891: substrate-specific transmembrane transporter activity1.35E-03
56GO:0043495: protein anchor1.53E-03
57GO:0001053: plastid sigma factor activity1.53E-03
58GO:0004345: glucose-6-phosphate dehydrogenase activity1.53E-03
59GO:0008453: alanine-glyoxylate transaminase activity1.53E-03
60GO:0016987: sigma factor activity1.53E-03
61GO:0004506: squalene monooxygenase activity1.53E-03
62GO:0009011: starch synthase activity1.53E-03
63GO:0051538: 3 iron, 4 sulfur cluster binding1.95E-03
64GO:0051082: unfolded protein binding2.13E-03
65GO:0004784: superoxide dismutase activity2.40E-03
66GO:2001070: starch binding2.40E-03
67GO:0004332: fructose-bisphosphate aldolase activity2.40E-03
68GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.89E-03
69GO:0004849: uridine kinase activity2.89E-03
70GO:0019899: enzyme binding3.40E-03
71GO:0016491: oxidoreductase activity3.76E-03
72GO:0004033: aldo-keto reductase (NADP) activity3.94E-03
73GO:0005375: copper ion transmembrane transporter activity4.51E-03
74GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.51E-03
75GO:0005384: manganese ion transmembrane transporter activity5.74E-03
76GO:0005381: iron ion transmembrane transporter activity5.74E-03
77GO:0008047: enzyme activator activity6.38E-03
78GO:0004364: glutathione transferase activity6.66E-03
79GO:0044183: protein binding involved in protein folding7.06E-03
80GO:0047372: acylglycerol lipase activity7.06E-03
81GO:0015386: potassium:proton antiporter activity7.06E-03
82GO:0008168: methyltransferase activity7.08E-03
83GO:0051537: 2 iron, 2 sulfur cluster binding7.50E-03
84GO:0046872: metal ion binding7.75E-03
85GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.10E-03
86GO:0051287: NAD binding8.40E-03
87GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism8.48E-03
88GO:0004022: alcohol dehydrogenase (NAD) activity8.48E-03
89GO:0005315: inorganic phosphate transmembrane transporter activity8.48E-03
90GO:0015095: magnesium ion transmembrane transporter activity8.48E-03
91GO:0003824: catalytic activity8.94E-03
92GO:0005215: transporter activity9.06E-03
93GO:0008266: poly(U) RNA binding9.23E-03
94GO:0016787: hydrolase activity9.75E-03
95GO:0004857: enzyme inhibitor activity1.16E-02
96GO:0004407: histone deacetylase activity1.16E-02
97GO:0015079: potassium ion transmembrane transporter activity1.24E-02
98GO:0043424: protein histidine kinase binding1.24E-02
99GO:0004176: ATP-dependent peptidase activity1.33E-02
100GO:0047134: protein-disulfide reductase activity1.70E-02
101GO:0009055: electron carrier activity1.75E-02
102GO:0004519: endonuclease activity1.78E-02
103GO:0050662: coenzyme binding1.99E-02
104GO:0004791: thioredoxin-disulfide reductase activity1.99E-02
105GO:0004518: nuclease activity2.30E-02
106GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.41E-02
107GO:0003743: translation initiation factor activity2.70E-02
108GO:0016597: amino acid binding2.74E-02
109GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.94E-02
110GO:0004721: phosphoprotein phosphatase activity3.20E-02
111GO:0015238: drug transmembrane transporter activity3.57E-02
112GO:0050661: NADP binding4.47E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast8.38E-57
4GO:0009535: chloroplast thylakoid membrane2.44E-31
5GO:0009941: chloroplast envelope2.72E-19
6GO:0009570: chloroplast stroma1.70E-17
7GO:0009534: chloroplast thylakoid4.68E-14
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.24E-12
9GO:0009543: chloroplast thylakoid lumen9.64E-09
10GO:0009579: thylakoid3.37E-08
11GO:0031969: chloroplast membrane4.75E-07
12GO:0009523: photosystem II9.99E-06
13GO:0042651: thylakoid membrane6.72E-05
14GO:0009344: nitrite reductase complex [NAD(P)H]2.22E-04
15GO:0009782: photosystem I antenna complex2.22E-04
16GO:0000427: plastid-encoded plastid RNA polymerase complex4.95E-04
17GO:0030095: chloroplast photosystem II6.86E-04
18GO:0030076: light-harvesting complex7.67E-04
19GO:0031977: thylakoid lumen8.52E-04
20GO:0016021: integral component of membrane1.09E-03
21GO:0005960: glycine cleavage complex1.15E-03
22GO:0048046: apoplast1.29E-03
23GO:0030286: dynein complex1.53E-03
24GO:0009512: cytochrome b6f complex1.95E-03
25GO:0010287: plastoglobule2.64E-03
26GO:0005777: peroxisome2.82E-03
27GO:0010319: stromule2.91E-03
28GO:0009533: chloroplast stromal thylakoid3.40E-03
29GO:0005875: microtubule associated complex1.08E-02
30GO:0009654: photosystem II oxygen evolving complex1.24E-02
31GO:0009706: chloroplast inner membrane1.34E-02
32GO:0016020: membrane1.46E-02
33GO:0043231: intracellular membrane-bounded organelle1.81E-02
34GO:0009522: photosystem I1.99E-02
35GO:0019898: extrinsic component of membrane2.09E-02
36GO:0005759: mitochondrial matrix2.11E-02
37GO:0030529: intracellular ribonucleoprotein complex2.85E-02
38GO:0009707: chloroplast outer membrane3.45E-02
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Gene type



Gene DE type