co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G38700

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0006412: translation	3.59E-11
3	GO:0042254: ribosome biogenesis	4.10E-10
4	GO:0090391: granum assembly	7.96E-10
5	GO:0015979: photosynthesis	4.59E-08
6	GO:0010196: nonphotochemical quenching	2.60E-05
7	GO:0010027: thylakoid membrane organization	3.94E-05
8	GO:0042759: long-chain fatty acid biosynthetic process	7.23E-05
9	GO:0009773: photosynthetic electron transport in photosystem I	9.43E-05
10	GO:0009735: response to cytokinin	1.06E-04
11	GO:0006729: tetrahydrobiopterin biosynthetic process	1.74E-04
12	GO:0006568: tryptophan metabolic process	1.74E-04
13	GO:0015714: phosphoenolpyruvate transport	2.93E-04
14	GO:0006168: adenine salvage	4.23E-04
15	GO:0006986: response to unfolded protein	4.23E-04
16	GO:0006166: purine ribonucleoside salvage	4.23E-04
17	GO:0071484: cellular response to light intensity	4.23E-04
18	GO:0051085: chaperone mediated protein folding requiring cofactor	4.23E-04
19	GO:0015713: phosphoglycerate transport	5.65E-04
20	GO:0044209: AMP salvage	7.14E-04
21	GO:0015995: chlorophyll biosynthetic process	8.59E-04
22	GO:0035435: phosphate ion transmembrane transport	8.73E-04
23	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.04E-03
24	GO:0009772: photosynthetic electron transport in photosystem II	1.21E-03
25	GO:0048564: photosystem I assembly	1.40E-03
26	GO:0010206: photosystem II repair	1.80E-03
27	GO:0006535: cysteine biosynthetic process from serine	2.23E-03
28	GO:0006949: syncytium formation	2.23E-03
29	GO:0043085: positive regulation of catalytic activity	2.46E-03
30	GO:0018119: peptidyl-cysteine S-nitrosylation	2.46E-03
31	GO:0006006: glucose metabolic process	2.94E-03
32	GO:0019253: reductive pentose-phosphate cycle	3.19E-03
33	GO:0010207: photosystem II assembly	3.19E-03
34	GO:0010025: wax biosynthetic process	3.71E-03
35	GO:0019344: cysteine biosynthetic process	3.98E-03
36	GO:0000027: ribosomal large subunit assembly	3.98E-03
37	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.13E-03
38	GO:0006284: base-excision repair	5.43E-03
39	GO:0009306: protein secretion	5.43E-03
40	GO:0009739: response to gibberellin	5.49E-03
41	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	5.74E-03
42	GO:0000413: protein peptidyl-prolyl isomerization	6.05E-03
43	GO:0006662: glycerol ether metabolic process	6.38E-03
44	GO:0015986: ATP synthesis coupled proton transport	6.70E-03
45	GO:0009658: chloroplast organization	7.59E-03
46	GO:0009828: plant-type cell wall loosening	8.43E-03
47	GO:0009567: double fertilization forming a zygote and endosperm	8.43E-03
48	GO:0080167: response to karrikin	9.41E-03
49	GO:0045454: cell redox homeostasis	1.13E-02
50	GO:0034599: cellular response to oxidative stress	1.40E-02
51	GO:0030001: metal ion transport	1.49E-02
52	GO:0008152: metabolic process	1.54E-02
53	GO:0010114: response to red light	1.63E-02
54	GO:0009664: plant-type cell wall organization	1.91E-02
55	GO:0042538: hyperosmotic salinity response	1.91E-02
56	GO:0006486: protein glycosylation	2.01E-02
57	GO:0051603: proteolysis involved in cellular protein catabolic process	2.06E-02
58	GO:0006096: glycolytic process	2.26E-02
59	GO:0009737: response to abscisic acid	2.94E-02
60	GO:0006457: protein folding	3.21E-02
61	GO:0009790: embryo development	3.38E-02
62	GO:0006633: fatty acid biosynthetic process	3.56E-02
63	GO:0045490: pectin catabolic process	3.81E-02

Rank	GO Term	Adjusted P value
1	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
2	GO:0003735: structural constituent of ribosome	4.26E-14
3	GO:0019843: rRNA binding	2.73E-13
4	GO:0016851: magnesium chelatase activity	2.69E-06
5	GO:0005528: FK506 binding	4.61E-06
6	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.98E-06
7	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	7.23E-05
8	GO:0004425: indole-3-glycerol-phosphate synthase activity	7.23E-05
9	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	7.23E-05
10	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.74E-04
11	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	1.74E-04
12	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.93E-04
13	GO:0003999: adenine phosphoribosyltransferase activity	4.23E-04
14	GO:0008097: 5S rRNA binding	4.23E-04
15	GO:0015120: phosphoglycerate transmembrane transporter activity	5.65E-04
16	GO:0016836: hydro-lyase activity	5.65E-04
17	GO:0008725: DNA-3-methyladenine glycosylase activity	7.14E-04
18	GO:0004017: adenylate kinase activity	1.04E-03
19	GO:0004124: cysteine synthase activity	1.04E-03
20	GO:0005509: calcium ion binding	2.13E-03
21	GO:0008047: enzyme activator activity	2.23E-03
22	GO:0008378: galactosyltransferase activity	2.70E-03
23	GO:0015114: phosphate ion transmembrane transporter activity	2.94E-03
24	GO:0008266: poly(U) RNA binding	3.19E-03
25	GO:0051087: chaperone binding	4.26E-03
26	GO:0030570: pectate lyase activity	5.13E-03
27	GO:0047134: protein-disulfide reductase activity	5.74E-03
28	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	6.38E-03
29	GO:0004791: thioredoxin-disulfide reductase activity	6.70E-03
30	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.07E-03
31	GO:0008236: serine-type peptidase activity	1.11E-02
32	GO:0003746: translation elongation factor activity	1.36E-02
33	GO:0050661: NADP binding	1.49E-02
34	GO:0004185: serine-type carboxypeptidase activity	1.63E-02
35	GO:0051287: NAD binding	1.86E-02
36	GO:0016887: ATPase activity	2.16E-02
37	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.31E-02
38	GO:0051082: unfolded protein binding	2.58E-02
39	GO:0015035: protein disulfide oxidoreductase activity	2.64E-02
40	GO:0016758: transferase activity, transferring hexosyl groups	2.97E-02
41	GO:0016740: transferase activity	3.02E-02
42	GO:0016829: lyase activity	3.20E-02
43	GO:0030170: pyridoxal phosphate binding	3.26E-02
44	GO:0004252: serine-type endopeptidase activity	3.26E-02
45	GO:0008565: protein transporter activity	3.44E-02
46	GO:0015297: antiporter activity	3.69E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009570: chloroplast stroma	3.14E-30
4	GO:0009507: chloroplast	1.75E-26
5	GO:0009579: thylakoid	1.51E-19
6	GO:0009941: chloroplast envelope	5.06E-19
7	GO:0009543: chloroplast thylakoid lumen	5.40E-17
8	GO:0009534: chloroplast thylakoid	2.55E-16
9	GO:0009535: chloroplast thylakoid membrane	4.60E-15
10	GO:0005840: ribosome	3.16E-13
11	GO:0031977: thylakoid lumen	2.21E-11
12	GO:0030095: chloroplast photosystem II	2.13E-08
13	GO:0009654: photosystem II oxygen evolving complex	6.03E-08
14	GO:0019898: extrinsic component of membrane	3.42E-07
15	GO:0010007: magnesium chelatase complex	1.12E-06
16	GO:0009547: plastid ribosome	7.23E-05
17	GO:0030093: chloroplast photosystem I	1.74E-04
18	GO:0016020: membrane	2.03E-04
19	GO:0015935: small ribosomal subunit	2.53E-04
20	GO:0009509: chromoplast	2.93E-04
21	GO:0033281: TAT protein transport complex	2.93E-04
22	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	8.73E-04
23	GO:0000311: plastid large ribosomal subunit	2.70E-03
24	GO:0009508: plastid chromosome	2.94E-03
25	GO:0000312: plastid small ribosomal subunit	3.19E-03
26	GO:0009523: photosystem II	7.04E-03
27	GO:0009295: nucleoid	8.79E-03
28	GO:0010319: stromule	8.79E-03
29	GO:0022625: cytosolic large ribosomal subunit	9.91E-03
30	GO:0005618: cell wall	1.93E-02
31	GO:0022626: cytosolic ribosome	2.37E-02
32	GO:0009706: chloroplast inner membrane	2.58E-02
33	GO:0010287: plastoglobule	2.92E-02
34	GO:0005759: mitochondrial matrix	3.56E-02
35	GO:0022627: cytosolic small ribosomal subunit	4.65E-02