co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G38540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0010394: homogalacturonan metabolic process	0.00E+00
4	GO:0009773: photosynthetic electron transport in photosystem I	1.62E-07
5	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.70E-06
6	GO:0032544: plastid translation	3.63E-06
7	GO:0015979: photosynthesis	4.48E-06
8	GO:0006000: fructose metabolic process	6.26E-06
9	GO:0006546: glycine catabolic process	2.66E-05
10	GO:0009409: response to cold	3.48E-05
11	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	6.36E-05
12	GO:0010196: nonphotochemical quenching	1.18E-04
13	GO:1904964: positive regulation of phytol biosynthetic process	1.88E-04
14	GO:0033481: galacturonate biosynthetic process	1.88E-04
15	GO:0045488: pectin metabolic process	1.88E-04
16	GO:0071588: hydrogen peroxide mediated signaling pathway	1.88E-04
17	GO:0019510: S-adenosylhomocysteine catabolic process	1.88E-04
18	GO:0060627: regulation of vesicle-mediated transport	1.88E-04
19	GO:0006002: fructose 6-phosphate metabolic process	1.88E-04
20	GO:1904966: positive regulation of vitamin E biosynthetic process	1.88E-04
21	GO:0071555: cell wall organization	3.55E-04
22	GO:0018119: peptidyl-cysteine S-nitrosylation	3.73E-04
23	GO:0018298: protein-chromophore linkage	3.76E-04
24	GO:0080183: response to photooxidative stress	4.24E-04
25	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.24E-04
26	GO:0006695: cholesterol biosynthetic process	4.24E-04
27	GO:0043255: regulation of carbohydrate biosynthetic process	4.24E-04
28	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.24E-04
29	GO:0033353: S-adenosylmethionine cycle	4.24E-04
30	GO:0015786: UDP-glucose transport	4.24E-04
31	GO:0006094: gluconeogenesis	4.86E-04
32	GO:0009767: photosynthetic electron transport chain	4.86E-04
33	GO:0005986: sucrose biosynthetic process	4.86E-04
34	GO:0019253: reductive pentose-phosphate cycle	5.47E-04
35	GO:0009833: plant-type primary cell wall biogenesis	6.80E-04
36	GO:0015783: GDP-fucose transport	6.92E-04
37	GO:0090506: axillary shoot meristem initiation	6.92E-04
38	GO:0006518: peptide metabolic process	6.92E-04
39	GO:0009062: fatty acid catabolic process	6.92E-04
40	GO:0009768: photosynthesis, light harvesting in photosystem I	8.29E-04
41	GO:0007017: microtubule-based process	8.29E-04
42	GO:0006810: transport	8.43E-04
43	GO:0016998: cell wall macromolecule catabolic process	9.07E-04
44	GO:0016556: mRNA modification	9.86E-04
45	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.86E-04
46	GO:0007231: osmosensory signaling pathway	9.86E-04
47	GO:0051085: chaperone mediated protein folding requiring cofactor	9.86E-04
48	GO:0072334: UDP-galactose transmembrane transport	9.86E-04
49	GO:0009658: chloroplast organization	1.02E-03
50	GO:0019464: glycine decarboxylation via glycine cleavage system	1.31E-03
51	GO:0045727: positive regulation of translation	1.31E-03
52	GO:0033500: carbohydrate homeostasis	1.31E-03
53	GO:0031122: cytoplasmic microtubule organization	1.31E-03
54	GO:0042742: defense response to bacterium	1.36E-03
55	GO:0006461: protein complex assembly	1.66E-03
56	GO:0019252: starch biosynthetic process	1.68E-03
57	GO:0055114: oxidation-reduction process	1.76E-03
58	GO:0006014: D-ribose metabolic process	2.05E-03
59	GO:0010358: leaf shaping	2.05E-03
60	GO:0010190: cytochrome b6f complex assembly	2.05E-03
61	GO:0010337: regulation of salicylic acid metabolic process	2.05E-03
62	GO:0010019: chloroplast-nucleus signaling pathway	2.46E-03
63	GO:0009955: adaxial/abaxial pattern specification	2.46E-03
64	GO:0010067: procambium histogenesis	2.46E-03
65	GO:0042026: protein refolding	2.46E-03
66	GO:1901259: chloroplast rRNA processing	2.46E-03
67	GO:0010027: thylakoid membrane organization	2.58E-03
68	GO:0006633: fatty acid biosynthetic process	2.80E-03
69	GO:0009645: response to low light intensity stimulus	2.90E-03
70	GO:0050829: defense response to Gram-negative bacterium	2.90E-03
71	GO:0046686: response to cadmium ion	3.27E-03
72	GO:0006875: cellular metal ion homeostasis	3.36E-03
73	GO:0007155: cell adhesion	3.36E-03
74	GO:0048564: photosystem I assembly	3.36E-03
75	GO:0008610: lipid biosynthetic process	3.36E-03
76	GO:0009817: defense response to fungus, incompatible interaction	3.36E-03
77	GO:0030244: cellulose biosynthetic process	3.36E-03
78	GO:0017004: cytochrome complex assembly	3.84E-03
79	GO:0009657: plastid organization	3.84E-03
80	GO:0016051: carbohydrate biosynthetic process	4.26E-03
81	GO:0045337: farnesyl diphosphate biosynthetic process	4.35E-03
82	GO:0033384: geranyl diphosphate biosynthetic process	4.35E-03
83	GO:0042761: very long-chain fatty acid biosynthetic process	4.87E-03
84	GO:0009735: response to cytokinin	5.34E-03
85	GO:0045036: protein targeting to chloroplast	5.42E-03
86	GO:0010192: mucilage biosynthetic process	5.42E-03
87	GO:0019538: protein metabolic process	5.42E-03
88	GO:0006032: chitin catabolic process	5.42E-03
89	GO:0000272: polysaccharide catabolic process	5.99E-03
90	GO:0006816: calcium ion transport	5.99E-03
91	GO:0006415: translational termination	5.99E-03
92	GO:0045037: protein import into chloroplast stroma	6.58E-03
93	GO:0042538: hyperosmotic salinity response	6.88E-03
94	GO:0080167: response to karrikin	7.22E-03
95	GO:0009809: lignin biosynthetic process	7.38E-03
96	GO:0010223: secondary shoot formation	7.82E-03
97	GO:0010207: photosystem II assembly	7.82E-03
98	GO:0010020: chloroplast fission	7.82E-03
99	GO:0070588: calcium ion transmembrane transport	8.47E-03
100	GO:0010053: root epidermal cell differentiation	8.47E-03
101	GO:0009969: xyloglucan biosynthetic process	8.47E-03
102	GO:0009225: nucleotide-sugar metabolic process	8.47E-03
103	GO:0009825: multidimensional cell growth	8.47E-03
104	GO:0010167: response to nitrate	8.47E-03
105	GO:0005985: sucrose metabolic process	8.47E-03
106	GO:0006096: glycolytic process	8.73E-03
107	GO:0045454: cell redox homeostasis	9.09E-03
108	GO:0019762: glucosinolate catabolic process	9.14E-03
109	GO:0010025: wax biosynthetic process	9.14E-03
110	GO:0008299: isoprenoid biosynthetic process	1.05E-02
111	GO:0009695: jasmonic acid biosynthetic process	1.05E-02
112	GO:0031408: oxylipin biosynthetic process	1.13E-02
113	GO:0007005: mitochondrion organization	1.20E-02
114	GO:0030245: cellulose catabolic process	1.20E-02
115	GO:0006730: one-carbon metabolic process	1.20E-02
116	GO:0040007: growth	1.28E-02
117	GO:0001944: vasculature development	1.28E-02
118	GO:0009294: DNA mediated transformation	1.28E-02
119	GO:0010089: xylem development	1.35E-02
120	GO:0019722: calcium-mediated signaling	1.35E-02
121	GO:0042744: hydrogen peroxide catabolic process	1.50E-02
122	GO:0010087: phloem or xylem histogenesis	1.51E-02
123	GO:0042631: cellular response to water deprivation	1.51E-02
124	GO:0042335: cuticle development	1.51E-02
125	GO:0048868: pollen tube development	1.60E-02
126	GO:0009741: response to brassinosteroid	1.60E-02
127	GO:0010268: brassinosteroid homeostasis	1.60E-02
128	GO:0045489: pectin biosynthetic process	1.60E-02
129	GO:0006814: sodium ion transport	1.68E-02
130	GO:0009791: post-embryonic development	1.77E-02
131	GO:0007623: circadian rhythm	1.83E-02
132	GO:0006635: fatty acid beta-oxidation	1.85E-02
133	GO:0016132: brassinosteroid biosynthetic process	1.85E-02
134	GO:0000302: response to reactive oxygen species	1.85E-02
135	GO:0007264: small GTPase mediated signal transduction	1.94E-02
136	GO:0010583: response to cyclopentenone	1.94E-02
137	GO:0010090: trichome morphogenesis	2.03E-02
138	GO:0016125: sterol metabolic process	2.13E-02
139	GO:0007267: cell-cell signaling	2.22E-02
140	GO:0010286: heat acclimation	2.22E-02
141	GO:0071805: potassium ion transmembrane transport	2.22E-02
142	GO:0009607: response to biotic stimulus	2.51E-02
143	GO:0009816: defense response to bacterium, incompatible interaction	2.51E-02
144	GO:0009627: systemic acquired resistance	2.61E-02
145	GO:0015995: chlorophyll biosynthetic process	2.71E-02
146	GO:0010411: xyloglucan metabolic process	2.71E-02
147	GO:0008219: cell death	2.91E-02
148	GO:0009832: plant-type cell wall biogenesis	3.02E-02
149	GO:0010218: response to far red light	3.12E-02
150	GO:0009407: toxin catabolic process	3.12E-02
151	GO:0009631: cold acclimation	3.23E-02
152	GO:0005975: carbohydrate metabolic process	3.28E-02
153	GO:0055085: transmembrane transport	3.30E-02
154	GO:0009637: response to blue light	3.45E-02
155	GO:0009867: jasmonic acid mediated signaling pathway	3.45E-02
156	GO:0034599: cellular response to oxidative stress	3.56E-02
157	GO:0006631: fatty acid metabolic process	3.89E-02
158	GO:0010114: response to red light	4.13E-02
159	GO:0008283: cell proliferation	4.13E-02
160	GO:0042546: cell wall biogenesis	4.24E-02
161	GO:0009644: response to high light intensity	4.36E-02
162	GO:0009636: response to toxic substance	4.48E-02
163	GO:0006869: lipid transport	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0051738: xanthophyll binding	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
6	GO:0051920: peroxiredoxin activity	9.94E-07
7	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.70E-06
8	GO:0016209: antioxidant activity	2.48E-06
9	GO:0016168: chlorophyll binding	1.74E-05
10	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.66E-05
11	GO:0004601: peroxidase activity	1.70E-04
12	GO:0015088: copper uptake transmembrane transporter activity	1.88E-04
13	GO:0030941: chloroplast targeting sequence binding	1.88E-04
14	GO:0010012: steroid 22-alpha hydroxylase activity	1.88E-04
15	GO:0008809: carnitine racemase activity	1.88E-04
16	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.88E-04
17	GO:0004013: adenosylhomocysteinase activity	1.88E-04
18	GO:0009496: plastoquinol--plastocyanin reductase activity	1.88E-04
19	GO:0008568: microtubule-severing ATPase activity	1.88E-04
20	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	1.88E-04
21	GO:0004321: fatty-acyl-CoA synthase activity	1.88E-04
22	GO:0019843: rRNA binding	3.19E-04
23	GO:0008967: phosphoglycolate phosphatase activity	4.24E-04
24	GO:0010297: heteropolysaccharide binding	4.24E-04
25	GO:0004047: aminomethyltransferase activity	4.24E-04
26	GO:0008805: carbon-monoxide oxygenase activity	4.24E-04
27	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	4.24E-04
28	GO:0004802: transketolase activity	4.24E-04
29	GO:0003924: GTPase activity	5.34E-04
30	GO:0031409: pigment binding	6.80E-04
31	GO:0005457: GDP-fucose transmembrane transporter activity	6.92E-04
32	GO:0070330: aromatase activity	6.92E-04
33	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	6.92E-04
34	GO:0004148: dihydrolipoyl dehydrogenase activity	6.92E-04
35	GO:0004165: dodecenoyl-CoA delta-isomerase activity	9.86E-04
36	GO:0008508: bile acid:sodium symporter activity	9.86E-04
37	GO:0004375: glycine dehydrogenase (decarboxylating) activity	9.86E-04
38	GO:0016149: translation release factor activity, codon specific	9.86E-04
39	GO:0005460: UDP-glucose transmembrane transporter activity	9.86E-04
40	GO:0022891: substrate-specific transmembrane transporter activity	1.07E-03
41	GO:0005319: lipid transporter activity	1.31E-03
42	GO:0051861: glycolipid binding	1.31E-03
43	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.31E-03
44	GO:0080032: methyl jasmonate esterase activity	1.31E-03
45	GO:0043495: protein anchor	1.31E-03
46	GO:0050378: UDP-glucuronate 4-epimerase activity	1.31E-03
47	GO:0003824: catalytic activity	1.64E-03
48	GO:0005459: UDP-galactose transmembrane transporter activity	1.66E-03
49	GO:0030414: peptidase inhibitor activity	1.66E-03
50	GO:0018685: alkane 1-monooxygenase activity	1.66E-03
51	GO:0016688: L-ascorbate peroxidase activity	2.05E-03
52	GO:0080030: methyl indole-3-acetate esterase activity	2.05E-03
53	GO:0004130: cytochrome-c peroxidase activity	2.05E-03
54	GO:0042578: phosphoric ester hydrolase activity	2.05E-03
55	GO:0016759: cellulose synthase activity	2.17E-03
56	GO:0005200: structural constituent of cytoskeleton	2.30E-03
57	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.46E-03
58	GO:0051753: mannan synthase activity	2.46E-03
59	GO:0004747: ribokinase activity	2.46E-03
60	GO:0004620: phospholipase activity	2.90E-03
61	GO:0019899: enzyme binding	2.90E-03
62	GO:0052747: sinapyl alcohol dehydrogenase activity	3.36E-03
63	GO:0004033: aldo-keto reductase (NADP) activity	3.36E-03
64	GO:0008865: fructokinase activity	3.36E-03
65	GO:0005525: GTP binding	3.49E-03
66	GO:0004222: metalloendopeptidase activity	3.71E-03
67	GO:0003747: translation release factor activity	4.35E-03
68	GO:0016207: 4-coumarate-CoA ligase activity	4.35E-03
69	GO:0004337: geranyltranstransferase activity	4.35E-03
70	GO:0005381: iron ion transmembrane transporter activity	4.87E-03
71	GO:0030234: enzyme regulator activity	5.42E-03
72	GO:0004568: chitinase activity	5.42E-03
73	GO:0051537: 2 iron, 2 sulfur cluster binding	5.93E-03
74	GO:0044183: protein binding involved in protein folding	5.99E-03
75	GO:0047372: acylglycerol lipase activity	5.99E-03
76	GO:0004161: dimethylallyltranstransferase activity	5.99E-03
77	GO:0005198: structural molecule activity	6.15E-03
78	GO:0045551: cinnamyl-alcohol dehydrogenase activity	6.58E-03
79	GO:0008378: galactosyltransferase activity	6.58E-03
80	GO:0031072: heat shock protein binding	7.19E-03
81	GO:0005262: calcium channel activity	7.19E-03
82	GO:0004565: beta-galactosidase activity	7.19E-03
83	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.82E-03
84	GO:0008083: growth factor activity	7.82E-03
85	GO:0004857: enzyme inhibitor activity	9.83E-03
86	GO:0016874: ligase activity	9.91E-03
87	GO:0030599: pectinesterase activity	9.91E-03
88	GO:0051082: unfolded protein binding	1.05E-02
89	GO:0015079: potassium ion transmembrane transporter activity	1.05E-02
90	GO:0033612: receptor serine/threonine kinase binding	1.13E-02
91	GO:0016760: cellulose synthase (UDP-forming) activity	1.28E-02
92	GO:0008810: cellulase activity	1.28E-02
93	GO:0009055: electron carrier activity	1.30E-02
94	GO:0046872: metal ion binding	1.42E-02
95	GO:0005102: receptor binding	1.43E-02
96	GO:0050662: coenzyme binding	1.68E-02
97	GO:0008289: lipid binding	1.80E-02
98	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.85E-02
99	GO:0048038: quinone binding	1.85E-02
100	GO:0008483: transaminase activity	2.22E-02
101	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.22E-02
102	GO:0008237: metallopeptidase activity	2.22E-02
103	GO:0042802: identical protein binding	2.32E-02
104	GO:0016491: oxidoreductase activity	2.67E-02
105	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.71E-02
106	GO:0030247: polysaccharide binding	2.71E-02
107	GO:0016788: hydrolase activity, acting on ester bonds	2.88E-02
108	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.46E-02
109	GO:0020037: heme binding	3.48E-02
110	GO:0004364: glutathione transferase activity	4.01E-02
111	GO:0042803: protein homodimerization activity	4.38E-02
112	GO:0051287: NAD binding	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	8.84E-22
2	GO:0009535: chloroplast thylakoid membrane	1.74E-18
3	GO:0009941: chloroplast envelope	4.45E-14
4	GO:0009534: chloroplast thylakoid	1.47E-13
5	GO:0048046: apoplast	5.20E-11
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.20E-10
7	GO:0009570: chloroplast stroma	6.68E-10
8	GO:0009579: thylakoid	6.84E-10
9	GO:0005618: cell wall	2.83E-06
10	GO:0010319: stromule	1.21E-05
11	GO:0016020: membrane	4.98E-05
12	GO:0005794: Golgi apparatus	8.18E-05
13	GO:0009533: chloroplast stromal thylakoid	1.18E-04
14	GO:0009523: photosystem II	1.43E-04
15	GO:0009344: nitrite reductase complex [NAD(P)H]	1.88E-04
16	GO:0009782: photosystem I antenna complex	1.88E-04
17	GO:0045298: tubulin complex	2.29E-04
18	GO:0010287: plastoglobule	2.93E-04
19	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.24E-04
20	GO:0030095: chloroplast photosystem II	5.47E-04
21	GO:0009505: plant-type cell wall	5.94E-04
22	GO:0030076: light-harvesting complex	6.12E-04
23	GO:0009654: photosystem II oxygen evolving complex	8.29E-04
24	GO:0042651: thylakoid membrane	8.29E-04
25	GO:0005802: trans-Golgi network	8.61E-04
26	GO:0015630: microtubule cytoskeleton	9.86E-04
27	GO:0005960: glycine cleavage complex	9.86E-04
28	GO:0005768: endosome	1.11E-03
29	GO:0031897: Tic complex	1.31E-03
30	GO:0009517: PSII associated light-harvesting complex II	1.31E-03
31	GO:0016021: integral component of membrane	1.60E-03
32	GO:0009512: cytochrome b6f complex	1.66E-03
33	GO:0009543: chloroplast thylakoid lumen	2.10E-03
34	GO:0000139: Golgi membrane	2.48E-03
35	GO:0031359: integral component of chloroplast outer membrane	2.90E-03
36	GO:0009506: plasmodesma	3.32E-03
37	GO:0009539: photosystem II reaction center	3.84E-03
38	GO:0005763: mitochondrial small ribosomal subunit	4.35E-03
39	GO:0046658: anchored component of plasma membrane	4.51E-03
40	GO:0005886: plasma membrane	5.26E-03
41	GO:0005874: microtubule	6.92E-03
42	GO:0009532: plastid stroma	1.13E-02
43	GO:0031225: anchored component of membrane	1.20E-02
44	GO:0009522: photosystem I	1.68E-02
45	GO:0019898: extrinsic component of membrane	1.77E-02
46	GO:0005840: ribosome	1.90E-02
47	GO:0032580: Golgi cisterna membrane	2.13E-02
48	GO:0022626: cytosolic ribosome	2.32E-02
49	GO:0005576: extracellular region	2.35E-02
50	GO:0009707: chloroplast outer membrane	2.91E-02
51	GO:0015934: large ribosomal subunit	3.23E-02
52	GO:0005773: vacuole	3.45E-02
53	GO:0005819: spindle	3.67E-02
54	GO:0031977: thylakoid lumen	3.89E-02