co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G38290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
2	GO:0070212: protein poly-ADP-ribosylation	0.00E+00
3	GO:1900367: positive regulation of defense response to insect	0.00E+00
4	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
5	GO:0072660: maintenance of protein location in plasma membrane	0.00E+00
6	GO:0071327: cellular response to trehalose stimulus	0.00E+00
7	GO:0009626: plant-type hypersensitive response	8.50E-09
8	GO:0006952: defense response	6.03E-08
9	GO:0009617: response to bacterium	1.82E-07
10	GO:0009816: defense response to bacterium, incompatible interaction	2.43E-07
11	GO:0042742: defense response to bacterium	3.16E-07
12	GO:0009625: response to insect	1.07E-06
13	GO:0031349: positive regulation of defense response	1.11E-06
14	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	1.11E-06
15	GO:0006468: protein phosphorylation	2.91E-06
16	GO:0046777: protein autophosphorylation	1.68E-05
17	GO:0080142: regulation of salicylic acid biosynthetic process	1.80E-05
18	GO:0051707: response to other organism	3.77E-05
19	GO:0009814: defense response, incompatible interaction	3.83E-05
20	GO:0009751: response to salicylic acid	3.83E-05
21	GO:0010942: positive regulation of cell death	4.37E-05
22	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	6.14E-05
23	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.06E-04
24	GO:0030162: regulation of proteolysis	1.06E-04
25	GO:2000031: regulation of salicylic acid mediated signaling pathway	1.33E-04
26	GO:0018105: peptidyl-serine phosphorylation	1.34E-04
27	GO:0051245: negative regulation of cellular defense response	1.50E-04
28	GO:0009609: response to symbiotic bacterium	1.50E-04
29	GO:0009700: indole phytoalexin biosynthetic process	1.50E-04
30	GO:0055081: anion homeostasis	1.50E-04
31	GO:1901183: positive regulation of camalexin biosynthetic process	1.50E-04
32	GO:0009270: response to humidity	1.50E-04
33	GO:0050691: regulation of defense response to virus by host	1.50E-04
34	GO:0060862: negative regulation of floral organ abscission	1.50E-04
35	GO:0035556: intracellular signal transduction	1.83E-04
36	GO:1900426: positive regulation of defense response to bacterium	1.96E-04
37	GO:0009627: systemic acquired resistance	1.98E-04
38	GO:0043069: negative regulation of programmed cell death	2.32E-04
39	GO:0009737: response to abscisic acid	2.51E-04
40	GO:0010105: negative regulation of ethylene-activated signaling pathway	3.11E-04
41	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.42E-04
42	GO:0010541: acropetal auxin transport	3.42E-04
43	GO:0051258: protein polymerization	3.42E-04
44	GO:0019725: cellular homeostasis	3.42E-04
45	GO:0051252: regulation of RNA metabolic process	3.42E-04
46	GO:0002221: pattern recognition receptor signaling pathway	3.42E-04
47	GO:2000072: regulation of defense response to fungus, incompatible interaction	3.42E-04
48	GO:0080185: effector dependent induction by symbiont of host immune response	3.42E-04
49	GO:0010618: aerenchyma formation	3.42E-04
50	GO:0080181: lateral root branching	3.42E-04
51	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.82E-04
52	GO:0002237: response to molecule of bacterial origin	4.00E-04
53	GO:0009863: salicylic acid mediated signaling pathway	5.53E-04
54	GO:0015695: organic cation transport	5.61E-04
55	GO:0010581: regulation of starch biosynthetic process	5.61E-04
56	GO:0002230: positive regulation of defense response to virus by host	5.61E-04
57	GO:0010359: regulation of anion channel activity	5.61E-04
58	GO:0055074: calcium ion homeostasis	5.61E-04
59	GO:0045793: positive regulation of cell size	5.61E-04
60	GO:0072661: protein targeting to plasma membrane	5.61E-04
61	GO:0010186: positive regulation of cellular defense response	5.61E-04
62	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.29E-04
63	GO:0031348: negative regulation of defense response	7.29E-04
64	GO:0006979: response to oxidative stress	7.30E-04
65	GO:0043207: response to external biotic stimulus	8.03E-04
66	GO:0006612: protein targeting to membrane	8.03E-04
67	GO:0010148: transpiration	8.03E-04
68	GO:0015696: ammonium transport	8.03E-04
69	GO:1902290: positive regulation of defense response to oomycetes	8.03E-04
70	GO:0001676: long-chain fatty acid metabolic process	8.03E-04
71	GO:0000187: activation of MAPK activity	8.03E-04
72	GO:0019438: aromatic compound biosynthetic process	8.03E-04
73	GO:0072488: ammonium transmembrane transport	1.06E-03
74	GO:0010363: regulation of plant-type hypersensitive response	1.06E-03
75	GO:0000460: maturation of 5.8S rRNA	1.06E-03
76	GO:0080037: negative regulation of cytokinin-activated signaling pathway	1.06E-03
77	GO:0060548: negative regulation of cell death	1.06E-03
78	GO:0006457: protein folding	1.29E-03
79	GO:0010193: response to ozone	1.31E-03
80	GO:2000762: regulation of phenylpropanoid metabolic process	1.35E-03
81	GO:0046283: anthocyanin-containing compound metabolic process	1.35E-03
82	GO:0031365: N-terminal protein amino acid modification	1.35E-03
83	GO:0010225: response to UV-C	1.35E-03
84	GO:0060918: auxin transport	1.65E-03
85	GO:0045040: protein import into mitochondrial outer membrane	1.65E-03
86	GO:0009759: indole glucosinolate biosynthetic process	1.65E-03
87	GO:0000470: maturation of LSU-rRNA	1.65E-03
88	GO:0050832: defense response to fungus	1.91E-03
89	GO:0006694: steroid biosynthetic process	1.98E-03
90	GO:0010310: regulation of hydrogen peroxide metabolic process	1.98E-03
91	GO:0071446: cellular response to salicylic acid stimulus	2.33E-03
92	GO:1900057: positive regulation of leaf senescence	2.33E-03
93	GO:0009610: response to symbiotic fungus	2.33E-03
94	GO:0009817: defense response to fungus, incompatible interaction	2.45E-03
95	GO:0009651: response to salt stress	2.50E-03
96	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.70E-03
97	GO:0009407: toxin catabolic process	2.70E-03
98	GO:0043068: positive regulation of programmed cell death	2.70E-03
99	GO:0006605: protein targeting	2.70E-03
100	GO:0031540: regulation of anthocyanin biosynthetic process	2.70E-03
101	GO:0006102: isocitrate metabolic process	2.70E-03
102	GO:0010119: regulation of stomatal movement	2.82E-03
103	GO:0010120: camalexin biosynthetic process	3.08E-03
104	GO:0010204: defense response signaling pathway, resistance gene-independent	3.08E-03
105	GO:0043562: cellular response to nitrogen levels	3.08E-03
106	GO:0009699: phenylpropanoid biosynthetic process	3.08E-03
107	GO:0045087: innate immune response	3.09E-03
108	GO:0006099: tricarboxylic acid cycle	3.23E-03
109	GO:0010112: regulation of systemic acquired resistance	3.49E-03
110	GO:0006887: exocytosis	3.67E-03
111	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	3.91E-03
112	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.35E-03
113	GO:0006032: chitin catabolic process	4.35E-03
114	GO:0010215: cellulose microfibril organization	4.35E-03
115	GO:0009723: response to ethylene	4.39E-03
116	GO:0009636: response to toxic substance	4.47E-03
117	GO:0009682: induced systemic resistance	4.80E-03
118	GO:0052544: defense response by callose deposition in cell wall	4.80E-03
119	GO:0031347: regulation of defense response	4.81E-03
120	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.81E-03
121	GO:0010200: response to chitin	5.00E-03
122	GO:0012501: programmed cell death	5.27E-03
123	GO:0002213: defense response to insect	5.27E-03
124	GO:0071365: cellular response to auxin stimulus	5.27E-03
125	GO:0010224: response to UV-B	5.54E-03
126	GO:0006626: protein targeting to mitochondrion	5.75E-03
127	GO:0007034: vacuolar transport	6.25E-03
128	GO:0009266: response to temperature stimulus	6.25E-03
129	GO:0006886: intracellular protein transport	6.27E-03
130	GO:0042343: indole glucosinolate metabolic process	6.77E-03
131	GO:0070588: calcium ion transmembrane transport	6.77E-03
132	GO:0009969: xyloglucan biosynthetic process	6.77E-03
133	GO:0009620: response to fungus	6.95E-03
134	GO:0080147: root hair cell development	7.84E-03
135	GO:0006629: lipid metabolic process	7.86E-03
136	GO:0048278: vesicle docking	8.97E-03
137	GO:0016998: cell wall macromolecule catabolic process	8.97E-03
138	GO:0030433: ubiquitin-dependent ERAD pathway	9.56E-03
139	GO:0019748: secondary metabolic process	9.56E-03
140	GO:0009411: response to UV	1.02E-02
141	GO:0009845: seed germination	1.03E-02
142	GO:0009414: response to water deprivation	1.05E-02
143	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.14E-02
144	GO:0042631: cellular response to water deprivation	1.20E-02
145	GO:0042391: regulation of membrane potential	1.20E-02
146	GO:0000413: protein peptidyl-prolyl isomerization	1.20E-02
147	GO:0010051: xylem and phloem pattern formation	1.20E-02
148	GO:0010197: polar nucleus fusion	1.27E-02
149	GO:0010150: leaf senescence	1.32E-02
150	GO:0061025: membrane fusion	1.34E-02
151	GO:0009646: response to absence of light	1.34E-02
152	GO:0006623: protein targeting to vacuole	1.41E-02
153	GO:0000302: response to reactive oxygen species	1.47E-02
154	GO:0006891: intra-Golgi vesicle-mediated transport	1.47E-02
155	GO:0007166: cell surface receptor signaling pathway	1.51E-02
156	GO:0009738: abscisic acid-activated signaling pathway	1.56E-02
157	GO:0006904: vesicle docking involved in exocytosis	1.76E-02
158	GO:0051607: defense response to virus	1.84E-02
159	GO:0001666: response to hypoxia	1.92E-02
160	GO:0009615: response to virus	1.92E-02
161	GO:0006508: proteolysis	1.99E-02
162	GO:0006906: vesicle fusion	2.07E-02
163	GO:0046686: response to cadmium ion	2.12E-02
164	GO:0016049: cell growth	2.23E-02
165	GO:0008219: cell death	2.31E-02
166	GO:0009832: plant-type cell wall biogenesis	2.40E-02
167	GO:0010311: lateral root formation	2.40E-02
168	GO:0006499: N-terminal protein myristoylation	2.48E-02
169	GO:0048527: lateral root development	2.56E-02
170	GO:0009631: cold acclimation	2.56E-02
171	GO:0007568: aging	2.56E-02
172	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.63E-02
173	GO:0016192: vesicle-mediated transport	2.67E-02
174	GO:0009867: jasmonic acid mediated signaling pathway	2.74E-02
175	GO:0006631: fatty acid metabolic process	3.09E-02
176	GO:0006897: endocytosis	3.09E-02
177	GO:0016042: lipid catabolic process	3.64E-02
178	GO:0009408: response to heat	3.74E-02
179	GO:0000165: MAPK cascade	3.76E-02
180	GO:0009753: response to jasmonic acid	4.01E-02
181	GO:0006486: protein glycosylation	4.05E-02
182	GO:0009909: regulation of flower development	4.36E-02
183	GO:0009873: ethylene-activated signaling pathway	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
2	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
3	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
4	GO:0010857: calcium-dependent protein kinase activity	0.00E+00
5	GO:0005524: ATP binding	8.44E-07
6	GO:0004674: protein serine/threonine kinase activity	1.51E-06
7	GO:0016301: kinase activity	2.06E-06
8	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.01E-05
9	GO:0004683: calmodulin-dependent protein kinase activity	1.13E-05
10	GO:0047631: ADP-ribose diphosphatase activity	2.93E-05
11	GO:0000210: NAD+ diphosphatase activity	4.37E-05
12	GO:0004656: procollagen-proline 4-dioxygenase activity	6.14E-05
13	GO:0005509: calcium ion binding	1.30E-04
14	GO:0080042: ADP-glucose pyrophosphohydrolase activity	1.50E-04
15	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	1.50E-04
16	GO:0048037: cofactor binding	1.50E-04
17	GO:0031127: alpha-(1,2)-fucosyltransferase activity	1.50E-04
18	GO:1901149: salicylic acid binding	1.50E-04
19	GO:0004806: triglyceride lipase activity	2.14E-04
20	GO:0038199: ethylene receptor activity	3.42E-04
21	GO:0017110: nucleoside-diphosphatase activity	3.42E-04
22	GO:0008428: ribonuclease inhibitor activity	3.42E-04
23	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.42E-04
24	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	3.42E-04
25	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.42E-04
26	GO:0080041: ADP-ribose pyrophosphohydrolase activity	3.42E-04
27	GO:0043021: ribonucleoprotein complex binding	3.42E-04
28	GO:0005516: calmodulin binding	3.94E-04
29	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	5.61E-04
30	GO:0051287: NAD binding	5.98E-04
31	GO:0031625: ubiquitin protein ligase binding	7.77E-04
32	GO:0035529: NADH pyrophosphatase activity	8.03E-04
33	GO:0004449: isocitrate dehydrogenase (NAD+) activity	8.03E-04
34	GO:0051740: ethylene binding	8.03E-04
35	GO:0043495: protein anchor	1.06E-03
36	GO:0051082: unfolded protein binding	1.06E-03
37	GO:0008948: oxaloacetate decarboxylase activity	1.35E-03
38	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.65E-03
39	GO:0008519: ammonium transmembrane transporter activity	1.65E-03
40	GO:0030976: thiamine pyrophosphate binding	1.65E-03
41	GO:0102391: decanoate--CoA ligase activity	1.98E-03
42	GO:0004602: glutathione peroxidase activity	1.98E-03
43	GO:0043295: glutathione binding	2.33E-03
44	GO:0004467: long-chain fatty acid-CoA ligase activity	2.33E-03
45	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	2.33E-03
46	GO:0008235: metalloexopeptidase activity	2.33E-03
47	GO:0005544: calcium-dependent phospholipid binding	2.70E-03
48	GO:0004708: MAP kinase kinase activity	2.70E-03
49	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.70E-03
50	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.09E-03
51	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.37E-03
52	GO:0008417: fucosyltransferase activity	3.49E-03
53	GO:0004364: glutathione transferase activity	3.82E-03
54	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.91E-03
55	GO:0004713: protein tyrosine kinase activity	4.35E-03
56	GO:0004673: protein histidine kinase activity	4.35E-03
57	GO:0004568: chitinase activity	4.35E-03
58	GO:0008171: O-methyltransferase activity	4.35E-03
59	GO:0004177: aminopeptidase activity	4.80E-03
60	GO:0008559: xenobiotic-transporting ATPase activity	4.80E-03
61	GO:0004672: protein kinase activity	5.56E-03
62	GO:0005388: calcium-transporting ATPase activity	5.75E-03
63	GO:0031072: heat shock protein binding	5.75E-03
64	GO:0000155: phosphorelay sensor kinase activity	5.75E-03
65	GO:0003712: transcription cofactor activity	6.77E-03
66	GO:0030552: cAMP binding	6.77E-03
67	GO:0030553: cGMP binding	6.77E-03
68	GO:0005515: protein binding	7.01E-03
69	GO:0031418: L-ascorbic acid binding	7.84E-03
70	GO:0005216: ion channel activity	8.40E-03
71	GO:0004707: MAP kinase activity	8.97E-03
72	GO:0030551: cyclic nucleotide binding	1.20E-02
73	GO:0005249: voltage-gated potassium channel activity	1.20E-02
74	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.23E-02
75	GO:0004527: exonuclease activity	1.27E-02
76	GO:0004872: receptor activity	1.41E-02
77	GO:0004197: cysteine-type endopeptidase activity	1.55E-02
78	GO:0042802: identical protein binding	1.68E-02
79	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.76E-02
80	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.23E-02
81	GO:0046872: metal ion binding	2.26E-02
82	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.31E-02
83	GO:0004222: metalloendopeptidase activity	2.48E-02
84	GO:0050897: cobalt ion binding	2.56E-02
85	GO:0061630: ubiquitin protein ligase activity	2.67E-02
86	GO:0000149: SNARE binding	2.91E-02
87	GO:0004871: signal transducer activity	3.18E-02
88	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.28E-02
89	GO:0005484: SNAP receptor activity	3.28E-02
90	GO:0004185: serine-type carboxypeptidase activity	3.28E-02
91	GO:0016787: hydrolase activity	3.38E-02
92	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.66E-02
93	GO:0005506: iron ion binding	3.86E-02
94	GO:0016298: lipase activity	4.15E-02
95	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.67E-02
96	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.88E-02
97	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.31E-08
2	GO:0005788: endoplasmic reticulum lumen	1.84E-04
3	GO:0019005: SCF ubiquitin ligase complex	2.46E-04
4	GO:0070545: PeBoW complex	3.42E-04
5	GO:0005901: caveola	3.42E-04
6	GO:0005829: cytosol	5.46E-04
7	GO:0005783: endoplasmic reticulum	5.53E-04
8	GO:0046861: glyoxysomal membrane	5.61E-04
9	GO:0005741: mitochondrial outer membrane	6.67E-04
10	GO:0070062: extracellular exosome	8.03E-04
11	GO:0009898: cytoplasmic side of plasma membrane	1.06E-03
12	GO:0000164: protein phosphatase type 1 complex	1.35E-03
13	GO:0030687: preribosome, large subunit precursor	2.33E-03
14	GO:0005887: integral component of plasma membrane	2.49E-03
15	GO:0005742: mitochondrial outer membrane translocase complex	3.08E-03
16	GO:0009514: glyoxysome	3.08E-03
17	GO:0030665: clathrin-coated vesicle membrane	3.91E-03
18	GO:0005740: mitochondrial envelope	4.35E-03
19	GO:0017119: Golgi transport complex	4.35E-03
20	GO:0031012: extracellular matrix	5.75E-03
21	GO:0005773: vacuole	6.75E-03
22	GO:0005795: Golgi stack	6.77E-03
23	GO:0009506: plasmodesma	8.08E-03
24	GO:0005774: vacuolar membrane	8.26E-03
25	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.08E-02
26	GO:0009504: cell plate	1.41E-02
27	GO:0016592: mediator complex	1.55E-02
28	GO:0000145: exocyst	1.55E-02
29	GO:0032580: Golgi cisterna membrane	1.69E-02
30	GO:0005778: peroxisomal membrane	1.76E-02
31	GO:0005789: endoplasmic reticulum membrane	2.06E-02
32	GO:0000151: ubiquitin ligase complex	2.31E-02
33	GO:0000325: plant-type vacuole	2.56E-02
34	GO:0015934: large ribosomal subunit	2.56E-02
35	GO:0005737: cytoplasm	2.75E-02
36	GO:0031225: anchored component of membrane	2.85E-02
37	GO:0005618: cell wall	3.05E-02
38	GO:0031902: late endosome membrane	3.09E-02
39	GO:0031201: SNARE complex	3.09E-02
40	GO:0005622: intracellular	3.35E-02
41	GO:0005794: Golgi apparatus	3.80E-02
42	GO:0005834: heterotrimeric G-protein complex	4.78E-02