Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G37790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
2GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
3GO:0042820: vitamin B6 catabolic process0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:0015739: sialic acid transport0.00E+00
7GO:0009773: photosynthetic electron transport in photosystem I1.07E-08
8GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.62E-07
9GO:0030388: fructose 1,6-bisphosphate metabolic process4.41E-06
10GO:0006000: fructose metabolic process1.57E-05
11GO:0006094: gluconeogenesis5.95E-05
12GO:0006021: inositol biosynthetic process6.26E-05
13GO:0019253: reductive pentose-phosphate cycle7.21E-05
14GO:0009833: plant-type primary cell wall biogenesis1.02E-04
15GO:0006810: transport1.23E-04
16GO:1901259: chloroplast rRNA processing1.95E-04
17GO:0005991: trehalose metabolic process3.11E-04
18GO:0019510: S-adenosylhomocysteine catabolic process3.11E-04
19GO:0009443: pyridoxal 5'-phosphate salvage3.11E-04
20GO:0006659: phosphatidylserine biosynthetic process3.11E-04
21GO:0051775: response to redox state3.11E-04
22GO:0080051: cutin transport3.11E-04
23GO:0033481: galacturonate biosynthetic process3.11E-04
24GO:0043686: co-translational protein modification3.11E-04
25GO:0009791: post-embryonic development3.83E-04
26GO:0006002: fructose 6-phosphate metabolic process3.94E-04
27GO:0071555: cell wall organization5.51E-04
28GO:0010275: NAD(P)H dehydrogenase complex assembly6.81E-04
29GO:0033353: S-adenosylmethionine cycle6.81E-04
30GO:0015786: UDP-glucose transport6.81E-04
31GO:1902326: positive regulation of chlorophyll biosynthetic process6.81E-04
32GO:0015908: fatty acid transport6.81E-04
33GO:0097054: L-glutamate biosynthetic process6.81E-04
34GO:1904143: positive regulation of carotenoid biosynthetic process6.81E-04
35GO:0018119: peptidyl-cysteine S-nitrosylation7.52E-04
36GO:0055114: oxidation-reduction process8.37E-04
37GO:0005986: sucrose biosynthetic process9.73E-04
38GO:0009832: plant-type cell wall biogenesis9.96E-04
39GO:0010207: photosystem II assembly1.09E-03
40GO:0010020: chloroplast fission1.09E-03
41GO:0090506: axillary shoot meristem initiation1.10E-03
42GO:0006518: peptide metabolic process1.10E-03
43GO:0009062: fatty acid catabolic process1.10E-03
44GO:0015675: nickel cation transport1.10E-03
45GO:0015783: GDP-fucose transport1.10E-03
46GO:0015979: photosynthesis1.22E-03
47GO:0007231: osmosensory signaling pathway1.58E-03
48GO:0006107: oxaloacetate metabolic process1.58E-03
49GO:0006537: glutamate biosynthetic process1.58E-03
50GO:0072334: UDP-galactose transmembrane transport1.58E-03
51GO:0043572: plastid fission1.58E-03
52GO:0016556: mRNA modification1.58E-03
53GO:0006020: inositol metabolic process1.58E-03
54GO:0006730: one-carbon metabolic process1.99E-03
55GO:0009765: photosynthesis, light harvesting2.12E-03
56GO:0033500: carbohydrate homeostasis2.12E-03
57GO:0031122: cytoplasmic microtubule organization2.12E-03
58GO:0006546: glycine catabolic process2.12E-03
59GO:0006734: NADH metabolic process2.12E-03
60GO:0008295: spermidine biosynthetic process2.12E-03
61GO:0010222: stem vascular tissue pattern formation2.12E-03
62GO:0019676: ammonia assimilation cycle2.12E-03
63GO:0016123: xanthophyll biosynthetic process2.71E-03
64GO:0080110: sporopollenin biosynthetic process2.71E-03
65GO:0046785: microtubule polymerization2.71E-03
66GO:0016120: carotene biosynthetic process2.71E-03
67GO:0043097: pyrimidine nucleoside salvage2.71E-03
68GO:0031365: N-terminal protein amino acid modification2.71E-03
69GO:0009658: chloroplast organization3.09E-03
70GO:0006096: glycolytic process3.13E-03
71GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.35E-03
72GO:0010190: cytochrome b6f complex assembly3.35E-03
73GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.35E-03
74GO:0006206: pyrimidine nucleobase metabolic process3.35E-03
75GO:0046855: inositol phosphate dephosphorylation3.35E-03
76GO:0010304: PSII associated light-harvesting complex II catabolic process3.35E-03
77GO:0010583: response to cyclopentenone3.92E-03
78GO:0009955: adaxial/abaxial pattern specification4.03E-03
79GO:0006458: 'de novo' protein folding4.03E-03
80GO:0010067: procambium histogenesis4.03E-03
81GO:0042026: protein refolding4.03E-03
82GO:0009854: oxidative photosynthetic carbon pathway4.03E-03
83GO:0010090: trichome morphogenesis4.19E-03
84GO:0005975: carbohydrate metabolic process4.50E-03
85GO:0009735: response to cytokinin4.50E-03
86GO:0071805: potassium ion transmembrane transport4.73E-03
87GO:0009395: phospholipid catabolic process4.76E-03
88GO:0010196: nonphotochemical quenching4.76E-03
89GO:0009645: response to low light intensity stimulus4.76E-03
90GO:0050829: defense response to Gram-negative bacterium4.76E-03
91GO:0016559: peroxisome fission5.53E-03
92GO:0007155: cell adhesion5.53E-03
93GO:0048564: photosystem I assembly5.53E-03
94GO:0008610: lipid biosynthetic process5.53E-03
95GO:0009819: drought recovery5.53E-03
96GO:0070413: trehalose metabolism in response to stress5.53E-03
97GO:0006875: cellular metal ion homeostasis5.53E-03
98GO:0071482: cellular response to light stimulus6.33E-03
99GO:0032544: plastid translation6.33E-03
100GO:0017004: cytochrome complex assembly6.33E-03
101GO:0030244: cellulose biosynthetic process6.93E-03
102GO:0018298: protein-chromophore linkage6.93E-03
103GO:0010206: photosystem II repair7.19E-03
104GO:0006098: pentose-phosphate shunt7.19E-03
105GO:0034765: regulation of ion transmembrane transport7.19E-03
106GO:0000373: Group II intron splicing7.19E-03
107GO:0000902: cell morphogenesis7.19E-03
108GO:0015780: nucleotide-sugar transport7.19E-03
109GO:0010205: photoinhibition8.07E-03
110GO:1900865: chloroplast RNA modification8.07E-03
111GO:0009853: photorespiration8.80E-03
112GO:0010192: mucilage biosynthetic process9.00E-03
113GO:0019538: protein metabolic process9.00E-03
114GO:0045036: protein targeting to chloroplast9.00E-03
115GO:0006816: calcium ion transport9.96E-03
116GO:0009409: response to cold1.05E-02
117GO:0006790: sulfur compound metabolic process1.10E-02
118GO:0005983: starch catabolic process1.10E-02
119GO:0045037: protein import into chloroplast stroma1.10E-02
120GO:0009744: response to sucrose1.14E-02
121GO:0009767: photosynthetic electron transport chain1.20E-02
122GO:0010588: cotyledon vascular tissue pattern formation1.20E-02
123GO:0006108: malate metabolic process1.20E-02
124GO:0009725: response to hormone1.20E-02
125GO:0010223: secondary shoot formation1.31E-02
126GO:0046686: response to cadmium ion1.37E-02
127GO:0009969: xyloglucan biosynthetic process1.42E-02
128GO:0009225: nucleotide-sugar metabolic process1.42E-02
129GO:0005985: sucrose metabolic process1.42E-02
130GO:0070588: calcium ion transmembrane transport1.42E-02
131GO:0046854: phosphatidylinositol phosphorylation1.42E-02
132GO:0019762: glucosinolate catabolic process1.53E-02
133GO:0005992: trehalose biosynthetic process1.65E-02
134GO:0009695: jasmonic acid biosynthetic process1.77E-02
135GO:0043622: cortical microtubule organization1.77E-02
136GO:0009768: photosynthesis, light harvesting in photosystem I1.77E-02
137GO:0007017: microtubule-based process1.77E-02
138GO:0009416: response to light stimulus1.84E-02
139GO:0061077: chaperone-mediated protein folding1.89E-02
140GO:0031408: oxylipin biosynthetic process1.89E-02
141GO:0016998: cell wall macromolecule catabolic process1.89E-02
142GO:0030245: cellulose catabolic process2.01E-02
143GO:0016226: iron-sulfur cluster assembly2.01E-02
144GO:0080092: regulation of pollen tube growth2.01E-02
145GO:0019748: secondary metabolic process2.01E-02
146GO:0009294: DNA mediated transformation2.14E-02
147GO:0001944: vasculature development2.14E-02
148GO:0010584: pollen exine formation2.27E-02
149GO:0019722: calcium-mediated signaling2.27E-02
150GO:0010089: xylem development2.27E-02
151GO:0016117: carotenoid biosynthetic process2.41E-02
152GO:0042631: cellular response to water deprivation2.55E-02
153GO:0042391: regulation of membrane potential2.55E-02
154GO:0010087: phloem or xylem histogenesis2.55E-02
155GO:0010182: sugar mediated signaling pathway2.68E-02
156GO:0009741: response to brassinosteroid2.68E-02
157GO:0009646: response to absence of light2.83E-02
158GO:0006814: sodium ion transport2.83E-02
159GO:0019252: starch biosynthetic process2.97E-02
160GO:0008654: phospholipid biosynthetic process2.97E-02
161GO:0080156: mitochondrial mRNA modification3.12E-02
162GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.12E-02
163GO:0006635: fatty acid beta-oxidation3.12E-02
164GO:0019761: glucosinolate biosynthetic process3.27E-02
165GO:0032502: developmental process3.27E-02
166GO:0030163: protein catabolic process3.42E-02
167GO:0007267: cell-cell signaling3.73E-02
168GO:0007623: circadian rhythm3.78E-02
169GO:0010027: thylakoid membrane organization4.05E-02
170GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.22E-02
171GO:0009816: defense response to bacterium, incompatible interaction4.22E-02
172GO:0010411: xyloglucan metabolic process4.55E-02
173GO:0016049: cell growth4.72E-02
174GO:0006508: proteolysis4.85E-02
175GO:0009817: defense response to fungus, incompatible interaction4.89E-02
RankGO TermAdjusted P value
1GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity0.00E+00
2GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0015136: sialic acid transmembrane transporter activity0.00E+00
5GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
6GO:0008974: phosphoribulokinase activity0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0008465: glycerate dehydrogenase activity0.00E+00
9GO:1990534: thermospermine oxidase activity0.00E+00
10GO:0051738: xanthophyll binding0.00E+00
11GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.71E-07
12GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.41E-06
13GO:0004222: metalloendopeptidase activity8.56E-06
14GO:0004033: aldo-keto reductase (NADP) activity8.68E-06
15GO:0048038: quinone binding3.11E-05
16GO:0080030: methyl indole-3-acetate esterase activity1.43E-04
17GO:0000210: NAD+ diphosphatase activity1.43E-04
18GO:0008809: carnitine racemase activity3.11E-04
19GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.11E-04
20GO:0004013: adenosylhomocysteinase activity3.11E-04
21GO:0008568: microtubule-severing ATPase activity3.11E-04
22GO:0050308: sugar-phosphatase activity3.11E-04
23GO:0004321: fatty-acyl-CoA synthase activity3.11E-04
24GO:0019203: carbohydrate phosphatase activity3.11E-04
25GO:0003867: 4-aminobutyrate transaminase activity3.11E-04
26GO:0005080: protein kinase C binding3.11E-04
27GO:0015088: copper uptake transmembrane transporter activity3.11E-04
28GO:0042586: peptide deformylase activity3.11E-04
29GO:0008746: NAD(P)+ transhydrogenase activity3.11E-04
30GO:0015245: fatty acid transporter activity3.11E-04
31GO:0016041: glutamate synthase (ferredoxin) activity3.11E-04
32GO:0030941: chloroplast targeting sequence binding3.11E-04
33GO:0016759: cellulose synthase activity5.37E-04
34GO:0008237: metallopeptidase activity5.79E-04
35GO:0004047: aminomethyltransferase activity6.81E-04
36GO:0004766: spermidine synthase activity6.81E-04
37GO:0052832: inositol monophosphate 3-phosphatase activity6.81E-04
38GO:0008805: carbon-monoxide oxygenase activity6.81E-04
39GO:0008934: inositol monophosphate 1-phosphatase activity6.81E-04
40GO:0052833: inositol monophosphate 4-phosphatase activity6.81E-04
41GO:0015099: nickel cation transmembrane transporter activity6.81E-04
42GO:0004512: inositol-3-phosphate synthase activity6.81E-04
43GO:0008967: phosphoglycolate phosphatase activity6.81E-04
44GO:0003824: catalytic activity6.92E-04
45GO:0004565: beta-galactosidase activity9.73E-04
46GO:0070330: aromatase activity1.10E-03
47GO:0003913: DNA photolyase activity1.10E-03
48GO:0004148: dihydrolipoyl dehydrogenase activity1.10E-03
49GO:0070402: NADPH binding1.10E-03
50GO:0005457: GDP-fucose transmembrane transporter activity1.10E-03
51GO:0008508: bile acid:sodium symporter activity1.58E-03
52GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.58E-03
53GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.58E-03
54GO:0005460: UDP-glucose transmembrane transporter activity1.58E-03
55GO:0004165: dodecenoyl-CoA delta-isomerase activity1.58E-03
56GO:0004176: ATP-dependent peptidase activity1.82E-03
57GO:0051861: glycolipid binding2.12E-03
58GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.12E-03
59GO:0080032: methyl jasmonate esterase activity2.12E-03
60GO:1990137: plant seed peroxidase activity2.12E-03
61GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.12E-03
62GO:0050378: UDP-glucuronate 4-epimerase activity2.12E-03
63GO:0016760: cellulose synthase (UDP-forming) activity2.17E-03
64GO:0051287: NAD binding2.21E-03
65GO:0008374: O-acyltransferase activity2.71E-03
66GO:0005459: UDP-galactose transmembrane transporter activity2.71E-03
67GO:0018685: alkane 1-monooxygenase activity2.71E-03
68GO:0047631: ADP-ribose diphosphatase activity2.71E-03
69GO:0051538: 3 iron, 4 sulfur cluster binding2.71E-03
70GO:0016788: hydrolase activity, acting on ester bonds3.18E-03
71GO:0004332: fructose-bisphosphate aldolase activity3.35E-03
72GO:0042578: phosphoric ester hydrolase activity3.35E-03
73GO:0016615: malate dehydrogenase activity3.35E-03
74GO:2001070: starch binding3.35E-03
75GO:0051920: peroxiredoxin activity4.03E-03
76GO:0051753: mannan synthase activity4.03E-03
77GO:0004849: uridine kinase activity4.03E-03
78GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.03E-03
79GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.03E-03
80GO:0030060: L-malate dehydrogenase activity4.03E-03
81GO:0005242: inward rectifier potassium channel activity4.03E-03
82GO:0005338: nucleotide-sugar transmembrane transporter activity4.76E-03
83GO:0009881: photoreceptor activity4.76E-03
84GO:0004620: phospholipase activity4.76E-03
85GO:0019843: rRNA binding5.28E-03
86GO:0016209: antioxidant activity5.53E-03
87GO:0016168: chlorophyll binding5.62E-03
88GO:0008135: translation factor activity, RNA binding6.33E-03
89GO:0016207: 4-coumarate-CoA ligase activity7.19E-03
90GO:0008138: protein tyrosine/serine/threonine phosphatase activity7.19E-03
91GO:0005381: iron ion transmembrane transporter activity8.07E-03
92GO:0003746: translation elongation factor activity8.80E-03
93GO:0030234: enzyme regulator activity9.00E-03
94GO:0016787: hydrolase activity9.45E-03
95GO:0016491: oxidoreductase activity9.93E-03
96GO:0044183: protein binding involved in protein folding9.96E-03
97GO:0047372: acylglycerol lipase activity9.96E-03
98GO:0005089: Rho guanyl-nucleotide exchange factor activity9.96E-03
99GO:0008378: galactosyltransferase activity1.10E-02
100GO:0004089: carbonate dehydratase activity1.20E-02
101GO:0031072: heat shock protein binding1.20E-02
102GO:0005262: calcium channel activity1.20E-02
103GO:0046872: metal ion binding1.25E-02
104GO:0008131: primary amine oxidase activity1.31E-02
105GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.31E-02
106GO:0008266: poly(U) RNA binding1.31E-02
107GO:0031409: pigment binding1.53E-02
108GO:0004857: enzyme inhibitor activity1.65E-02
109GO:0051536: iron-sulfur cluster binding1.65E-02
110GO:0043424: protein histidine kinase binding1.77E-02
111GO:0015079: potassium ion transmembrane transporter activity1.77E-02
112GO:0033612: receptor serine/threonine kinase binding1.89E-02
113GO:0030599: pectinesterase activity2.06E-02
114GO:0016874: ligase activity2.06E-02
115GO:0022891: substrate-specific transmembrane transporter activity2.14E-02
116GO:0008810: cellulase activity2.14E-02
117GO:0051082: unfolded protein binding2.19E-02
118GO:0005102: receptor binding2.41E-02
119GO:0042803: protein homodimerization activity2.43E-02
120GO:0030551: cyclic nucleotide binding2.55E-02
121GO:0005249: voltage-gated potassium channel activity2.55E-02
122GO:0050662: coenzyme binding2.83E-02
123GO:0004872: receptor activity2.97E-02
124GO:0003924: GTPase activity2.98E-02
125GO:0016762: xyloglucan:xyloglucosyl transferase activity3.12E-02
126GO:0000156: phosphorelay response regulator activity3.42E-02
127GO:0016791: phosphatase activity3.58E-02
128GO:0008483: transaminase activity3.73E-02
129GO:0016722: oxidoreductase activity, oxidizing metal ions3.73E-02
130GO:0005200: structural constituent of cytoskeleton3.73E-02
131GO:0005525: GTP binding3.83E-02
132GO:0008017: microtubule binding3.96E-02
133GO:0051213: dioxygenase activity4.05E-02
134GO:0016798: hydrolase activity, acting on glycosyl bonds4.55E-02
135GO:0042802: identical protein binding4.79E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast7.45E-28
4GO:0009535: chloroplast thylakoid membrane3.04E-18
5GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.82E-16
6GO:0009570: chloroplast stroma9.79E-15
7GO:0009941: chloroplast envelope1.10E-12
8GO:0048046: apoplast4.76E-11
9GO:0009534: chloroplast thylakoid4.14E-09
10GO:0009579: thylakoid4.21E-08
11GO:0016021: integral component of membrane1.30E-04
12GO:0009782: photosystem I antenna complex3.11E-04
13GO:0009344: nitrite reductase complex [NAD(P)H]3.11E-04
14GO:0046658: anchored component of plasma membrane5.03E-04
15GO:0045254: pyruvate dehydrogenase complex6.81E-04
16GO:0009706: chloroplast inner membrane6.95E-04
17GO:0010330: cellulose synthase complex1.10E-03
18GO:0009897: external side of plasma membrane1.10E-03
19GO:0005853: eukaryotic translation elongation factor 1 complex1.10E-03
20GO:0015630: microtubule cytoskeleton1.58E-03
21GO:0009654: photosystem II oxygen evolving complex1.66E-03
22GO:0009517: PSII associated light-harvesting complex II2.12E-03
23GO:0031897: Tic complex2.12E-03
24GO:0009505: plant-type cell wall2.97E-03
25GO:0010005: cortical microtubule, transverse to long axis4.03E-03
26GO:0005886: plasma membrane4.48E-03
27GO:0010319: stromule4.73E-03
28GO:0031359: integral component of chloroplast outer membrane4.76E-03
29GO:0010287: plastoglobule4.93E-03
30GO:0009539: photosystem II reaction center6.33E-03
31GO:0005811: lipid particle6.33E-03
32GO:0009707: chloroplast outer membrane6.93E-03
33GO:0005759: mitochondrial matrix7.07E-03
34GO:0005763: mitochondrial small ribosomal subunit7.19E-03
35GO:0055028: cortical microtubule9.00E-03
36GO:0016324: apical plasma membrane9.00E-03
37GO:0000139: Golgi membrane1.05E-02
38GO:0031225: anchored component of membrane1.14E-02
39GO:0030095: chloroplast photosystem II1.31E-02
40GO:0030076: light-harvesting complex1.42E-02
41GO:0005618: cell wall1.43E-02
42GO:0042651: thylakoid membrane1.77E-02
43GO:0009536: plastid2.52E-02
44GO:0009543: chloroplast thylakoid lumen2.75E-02
45GO:0009523: photosystem II2.97E-02
46GO:0019898: extrinsic component of membrane2.97E-02
47GO:0005794: Golgi apparatus3.09E-02
48GO:0032580: Golgi cisterna membrane3.58E-02
49GO:0005802: trans-Golgi network3.69E-02
50GO:0030529: intracellular ribonucleoprotein complex4.05E-02
51GO:0005887: integral component of plasma membrane4.34E-02
52GO:0005768: endosome4.44E-02
53GO:0016020: membrane4.55E-02
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Gene type



Gene DE type