Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G35860

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0007638: mechanosensory behavior0.00E+00
2GO:0010394: homogalacturonan metabolic process0.00E+00
3GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome0.00E+00
4GO:0071555: cell wall organization2.37E-07
5GO:0009833: plant-type primary cell wall biogenesis3.93E-05
6GO:0042335: cuticle development1.20E-04
7GO:0045489: pectin biosynthetic process1.34E-04
8GO:0033481: galacturonate biosynthetic process2.02E-04
9GO:0045488: pectin metabolic process2.02E-04
10GO:0019510: S-adenosylhomocysteine catabolic process2.02E-04
11GO:0000038: very long-chain fatty acid metabolic process4.10E-04
12GO:0030244: cellulose biosynthetic process4.26E-04
13GO:0033353: S-adenosylmethionine cycle4.52E-04
14GO:0015786: UDP-glucose transport4.52E-04
15GO:0030388: fructose 1,6-bisphosphate metabolic process4.52E-04
16GO:0010275: NAD(P)H dehydrogenase complex assembly4.52E-04
17GO:0006633: fatty acid biosynthetic process5.32E-04
18GO:0006000: fructose metabolic process7.36E-04
19GO:0006518: peptide metabolic process7.36E-04
20GO:0009062: fatty acid catabolic process7.36E-04
21GO:0015783: GDP-fucose transport7.36E-04
22GO:0090506: axillary shoot meristem initiation7.36E-04
23GO:0010025: wax biosynthetic process7.47E-04
24GO:0007017: microtubule-based process9.08E-04
25GO:0072334: UDP-galactose transmembrane transport1.05E-03
26GO:0016556: mRNA modification1.05E-03
27GO:0007231: osmosensory signaling pathway1.05E-03
28GO:0006730: one-carbon metabolic process1.08E-03
29GO:0030245: cellulose catabolic process1.08E-03
30GO:0019722: calcium-mediated signaling1.28E-03
31GO:0006085: acetyl-CoA biosynthetic process1.40E-03
32GO:0015846: polyamine transport1.40E-03
33GO:0033500: carbohydrate homeostasis1.40E-03
34GO:0031122: cytoplasmic microtubule organization1.40E-03
35GO:0006546: glycine catabolic process1.40E-03
36GO:0009956: radial pattern formation1.40E-03
37GO:0015689: molybdate ion transport1.40E-03
38GO:0009765: photosynthesis, light harvesting1.40E-03
39GO:0016120: carotene biosynthetic process1.78E-03
40GO:0046785: microtubule polymerization1.78E-03
41GO:0016123: xanthophyll biosynthetic process1.78E-03
42GO:0016132: brassinosteroid biosynthetic process1.98E-03
43GO:0010583: response to cyclopentenone2.11E-03
44GO:0010358: leaf shaping2.19E-03
45GO:0010190: cytochrome b6f complex assembly2.19E-03
46GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.19E-03
47GO:0009635: response to herbicide2.19E-03
48GO:0006555: methionine metabolic process2.19E-03
49GO:0070814: hydrogen sulfide biosynthetic process2.19E-03
50GO:0010090: trichome morphogenesis2.25E-03
51GO:0007267: cell-cell signaling2.54E-03
52GO:0010067: procambium histogenesis2.63E-03
53GO:1901259: chloroplast rRNA processing2.63E-03
54GO:0009082: branched-chain amino acid biosynthetic process2.63E-03
55GO:0006694: steroid biosynthetic process2.63E-03
56GO:0009099: valine biosynthetic process2.63E-03
57GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity2.63E-03
58GO:0009955: adaxial/abaxial pattern specification2.63E-03
59GO:0030497: fatty acid elongation3.09E-03
60GO:0050829: defense response to Gram-negative bacterium3.09E-03
61GO:0006875: cellular metal ion homeostasis3.59E-03
62GO:0007155: cell adhesion3.59E-03
63GO:0005975: carbohydrate metabolic process3.78E-03
64GO:0009832: plant-type cell wall biogenesis3.89E-03
65GO:0009834: plant-type secondary cell wall biogenesis4.08E-03
66GO:0009827: plant-type cell wall modification4.10E-03
67GO:0009097: isoleucine biosynthetic process4.10E-03
68GO:0032544: plastid translation4.10E-03
69GO:0009808: lignin metabolic process4.10E-03
70GO:0006002: fructose 6-phosphate metabolic process4.10E-03
71GO:0006754: ATP biosynthetic process4.65E-03
72GO:0000902: cell morphogenesis4.65E-03
73GO:0016051: carbohydrate biosynthetic process4.69E-03
74GO:0042761: very long-chain fatty acid biosynthetic process5.21E-03
75GO:0035999: tetrahydrofolate interconversion5.21E-03
76GO:0055114: oxidation-reduction process5.40E-03
77GO:0009970: cellular response to sulfate starvation5.80E-03
78GO:0019538: protein metabolic process5.80E-03
79GO:0000103: sulfate assimilation5.80E-03
80GO:0045036: protein targeting to chloroplast5.80E-03
81GO:0010192: mucilage biosynthetic process5.80E-03
82GO:0006816: calcium ion transport6.41E-03
83GO:0018119: peptidyl-cysteine S-nitrosylation6.41E-03
84GO:0010015: root morphogenesis6.41E-03
85GO:0045037: protein import into chloroplast stroma7.04E-03
86GO:0009725: response to hormone7.70E-03
87GO:0006094: gluconeogenesis7.70E-03
88GO:0005986: sucrose biosynthetic process7.70E-03
89GO:0009933: meristem structural organization8.37E-03
90GO:0010207: photosystem II assembly8.37E-03
91GO:0019253: reductive pentose-phosphate cycle8.37E-03
92GO:0010223: secondary shoot formation8.37E-03
93GO:0010167: response to nitrate9.07E-03
94GO:0070588: calcium ion transmembrane transport9.07E-03
95GO:0009969: xyloglucan biosynthetic process9.07E-03
96GO:0009225: nucleotide-sugar metabolic process9.07E-03
97GO:0043622: cortical microtubule organization1.13E-02
98GO:0009695: jasmonic acid biosynthetic process1.13E-02
99GO:0031408: oxylipin biosynthetic process1.21E-02
100GO:0016998: cell wall macromolecule catabolic process1.21E-02
101GO:0046686: response to cadmium ion1.29E-02
102GO:0080092: regulation of pollen tube growth1.29E-02
103GO:0009294: DNA mediated transformation1.37E-02
104GO:0040007: growth1.37E-02
105GO:0001944: vasculature development1.37E-02
106GO:0010089: xylem development1.45E-02
107GO:0016117: carotenoid biosynthetic process1.54E-02
108GO:0000271: polysaccharide biosynthetic process1.62E-02
109GO:0010087: phloem or xylem histogenesis1.62E-02
110GO:0010305: leaf vascular tissue pattern formation1.71E-02
111GO:0048868: pollen tube development1.71E-02
112GO:0009741: response to brassinosteroid1.71E-02
113GO:0010268: brassinosteroid homeostasis1.71E-02
114GO:0009791: post-embryonic development1.89E-02
115GO:0019252: starch biosynthetic process1.89E-02
116GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.99E-02
117GO:0006635: fatty acid beta-oxidation1.99E-02
118GO:0045490: pectin catabolic process2.01E-02
119GO:1901657: glycosyl compound metabolic process2.18E-02
120GO:0016125: sterol metabolic process2.28E-02
121GO:0071805: potassium ion transmembrane transport2.38E-02
122GO:0016126: sterol biosynthetic process2.58E-02
123GO:0009816: defense response to bacterium, incompatible interaction2.69E-02
124GO:0009607: response to biotic stimulus2.69E-02
125GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.69E-02
126GO:0042128: nitrate assimilation2.80E-02
127GO:0010411: xyloglucan metabolic process2.90E-02
128GO:0009826: unidimensional cell growth3.00E-02
129GO:0016049: cell growth3.01E-02
130GO:0051301: cell division3.08E-02
131GO:0009817: defense response to fungus, incompatible interaction3.12E-02
132GO:0000160: phosphorelay signal transduction system3.23E-02
133GO:0009407: toxin catabolic process3.35E-02
134GO:0007568: aging3.46E-02
135GO:0007049: cell cycle3.48E-02
136GO:0009867: jasmonic acid mediated signaling pathway3.69E-02
137GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.99E-02
138GO:0006839: mitochondrial transport4.05E-02
139GO:0006631: fatty acid metabolic process4.18E-02
140GO:0008283: cell proliferation4.42E-02
141GO:0009744: response to sucrose4.42E-02
142GO:0042546: cell wall biogenesis4.55E-02
143GO:0045454: cell redox homeostasis4.61E-02
144GO:0009636: response to toxic substance4.80E-02
RankGO TermAdjusted P value
1GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
4GO:0019808: polyamine binding0.00E+00
5GO:0050613: delta14-sterol reductase activity0.00E+00
6GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
7GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
8GO:1990534: thermospermine oxidase activity0.00E+00
9GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
10GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
11GO:0050614: delta24-sterol reductase activity0.00E+00
12GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
13GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.59E-04
14GO:0008568: microtubule-severing ATPase activity2.02E-04
15GO:0004321: fatty-acyl-CoA synthase activity2.02E-04
16GO:0003984: acetolactate synthase activity2.02E-04
17GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.02E-04
18GO:0015088: copper uptake transmembrane transporter activity2.02E-04
19GO:0030941: chloroplast targeting sequence binding2.02E-04
20GO:0010012: steroid 22-alpha hydroxylase activity2.02E-04
21GO:0008809: carnitine racemase activity2.02E-04
22GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.02E-04
23GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer2.02E-04
24GO:0004013: adenosylhomocysteinase activity2.02E-04
25GO:0016759: cellulose synthase activity2.36E-04
26GO:0008805: carbon-monoxide oxygenase activity4.52E-04
27GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity4.52E-04
28GO:0004802: transketolase activity4.52E-04
29GO:0004047: aminomethyltransferase activity4.52E-04
30GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.52E-04
31GO:0070330: aromatase activity7.36E-04
32GO:0004781: sulfate adenylyltransferase (ATP) activity7.36E-04
33GO:0005457: GDP-fucose transmembrane transporter activity7.36E-04
34GO:0102336: 3-oxo-arachidoyl-CoA synthase activity7.47E-04
35GO:0102337: 3-oxo-cerotoyl-CoA synthase activity7.47E-04
36GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity7.47E-04
37GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.05E-03
38GO:0005460: UDP-glucose transmembrane transporter activity1.05E-03
39GO:0004165: dodecenoyl-CoA delta-isomerase activity1.05E-03
40GO:0003878: ATP citrate synthase activity1.05E-03
41GO:0008810: cellulase activity1.18E-03
42GO:0016760: cellulose synthase (UDP-forming) activity1.18E-03
43GO:0015098: molybdate ion transmembrane transporter activity1.40E-03
44GO:0050378: UDP-glucuronate 4-epimerase activity1.40E-03
45GO:0004737: pyruvate decarboxylase activity1.40E-03
46GO:0051861: glycolipid binding1.40E-03
47GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.40E-03
48GO:0080032: methyl jasmonate esterase activity1.40E-03
49GO:0009922: fatty acid elongase activity1.78E-03
50GO:0005459: UDP-galactose transmembrane transporter activity1.78E-03
51GO:0018685: alkane 1-monooxygenase activity1.78E-03
52GO:0003824: catalytic activity1.99E-03
53GO:0042578: phosphoric ester hydrolase activity2.19E-03
54GO:0030976: thiamine pyrophosphate binding2.19E-03
55GO:0080030: methyl indole-3-acetate esterase activity2.19E-03
56GO:0005200: structural constituent of cytoskeleton2.54E-03
57GO:0051753: mannan synthase activity2.63E-03
58GO:0051920: peroxiredoxin activity2.63E-03
59GO:0004033: aldo-keto reductase (NADP) activity3.59E-03
60GO:0016209: antioxidant activity3.59E-03
61GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism4.65E-03
62GO:0016207: 4-coumarate-CoA ligase activity4.65E-03
63GO:0005381: iron ion transmembrane transporter activity5.21E-03
64GO:0005089: Rho guanyl-nucleotide exchange factor activity6.41E-03
65GO:0047372: acylglycerol lipase activity6.41E-03
66GO:0016757: transferase activity, transferring glycosyl groups6.49E-03
67GO:0008378: galactosyltransferase activity7.04E-03
68GO:0004565: beta-galactosidase activity7.70E-03
69GO:0005262: calcium channel activity7.70E-03
70GO:0008083: growth factor activity8.37E-03
71GO:0008131: primary amine oxidase activity8.37E-03
72GO:0042973: glucan endo-1,3-beta-D-glucosidase activity8.37E-03
73GO:0045735: nutrient reservoir activity9.63E-03
74GO:0004857: enzyme inhibitor activity1.05E-02
75GO:0030599: pectinesterase activity1.09E-02
76GO:0015079: potassium ion transmembrane transporter activity1.13E-02
77GO:0051087: chaperone binding1.13E-02
78GO:0033612: receptor serine/threonine kinase binding1.21E-02
79GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.29E-02
80GO:0030570: pectate lyase activity1.37E-02
81GO:0016758: transferase activity, transferring hexosyl groups1.42E-02
82GO:0019843: rRNA binding1.46E-02
83GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.50E-02
84GO:0005102: receptor binding1.54E-02
85GO:0019901: protein kinase binding1.89E-02
86GO:0004872: receptor activity1.89E-02
87GO:0016762: xyloglucan:xyloglucosyl transferase activity1.99E-02
88GO:0008289: lipid binding2.04E-02
89GO:0000156: phosphorelay response regulator activity2.18E-02
90GO:0008483: transaminase activity2.38E-02
91GO:0016722: oxidoreductase activity, oxidizing metal ions2.38E-02
92GO:0016413: O-acetyltransferase activity2.48E-02
93GO:0102483: scopolin beta-glucosidase activity2.90E-02
94GO:0016798: hydrolase activity, acting on glycosyl bonds2.90E-02
95GO:0016491: oxidoreductase activity3.08E-02
96GO:0004222: metalloendopeptidase activity3.35E-02
97GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.35E-02
98GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.46E-02
99GO:0030145: manganese ion binding3.46E-02
100GO:0050660: flavin adenine dinucleotide binding3.60E-02
101GO:0003746: translation elongation factor activity3.69E-02
102GO:0008422: beta-glucosidase activity3.93E-02
103GO:0051539: 4 iron, 4 sulfur cluster binding4.05E-02
104GO:0004364: glutathione transferase activity4.30E-02
105GO:0004185: serine-type carboxypeptidase activity4.42E-02
106GO:0004871: signal transducer activity4.82E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0042597: periplasmic space0.00E+00
3GO:0048046: apoplast4.77E-07
4GO:0005794: Golgi apparatus1.19E-05
5GO:0009579: thylakoid1.23E-04
6GO:0009505: plant-type cell wall1.89E-04
7GO:0009941: chloroplast envelope1.95E-04
8GO:0031225: anchored component of membrane2.41E-04
9GO:0005802: trans-Golgi network2.57E-04
10GO:0005886: plasma membrane3.02E-04
11GO:0009507: chloroplast3.33E-04
12GO:0005768: endosome3.49E-04
13GO:0009570: chloroplast stroma5.67E-04
14GO:0005576: extracellular region5.90E-04
15GO:0009534: chloroplast thylakoid5.98E-04
16GO:0005853: eukaryotic translation elongation factor 1 complex7.36E-04
17GO:0010330: cellulose synthase complex7.36E-04
18GO:0009535: chloroplast thylakoid membrane8.29E-04
19GO:0000139: Golgi membrane8.75E-04
20GO:0046658: anchored component of plasma membrane9.39E-04
21GO:0009346: citrate lyase complex1.05E-03
22GO:0015630: microtubule cytoskeleton1.05E-03
23GO:0016021: integral component of membrane1.11E-03
24GO:0005618: cell wall1.12E-03
25GO:0031897: Tic complex1.40E-03
26GO:0010005: cortical microtubule, transverse to long axis2.63E-03
27GO:0031359: integral component of chloroplast outer membrane3.09E-03
28GO:0009539: photosystem II reaction center4.10E-03
29GO:0016020: membrane4.47E-03
30GO:0045298: tubulin complex4.65E-03
31GO:0005763: mitochondrial small ribosomal subunit4.65E-03
32GO:0016324: apical plasma membrane5.80E-03
33GO:0055028: cortical microtubule5.80E-03
34GO:0005874: microtubule7.83E-03
35GO:0030176: integral component of endoplasmic reticulum membrane9.07E-03
36GO:0009654: photosystem II oxygen evolving complex1.13E-02
37GO:0005615: extracellular space2.25E-02
38GO:0032580: Golgi cisterna membrane2.28E-02
39GO:0005783: endoplasmic reticulum2.94E-02
40GO:0009707: chloroplast outer membrane3.12E-02
41GO:0005856: cytoskeleton4.80E-02
42GO:0009506: plasmodesma4.94E-02
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Gene type



Gene DE type