GO Enrichment Analysis of Co-expressed Genes with
AT2G35410
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 2 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 3 | GO:0042407: cristae formation | 0.00E+00 |
| 4 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 5 | GO:0006223: uracil salvage | 0.00E+00 |
| 6 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 7 | GO:0042371: vitamin K biosynthetic process | 0.00E+00 |
| 8 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 9 | GO:0006412: translation | 9.97E-16 |
| 10 | GO:0042254: ribosome biogenesis | 1.49E-13 |
| 11 | GO:0009735: response to cytokinin | 3.60E-07 |
| 12 | GO:0032544: plastid translation | 1.06E-06 |
| 13 | GO:0015976: carbon utilization | 1.12E-05 |
| 14 | GO:0032543: mitochondrial translation | 1.85E-05 |
| 15 | GO:0000413: protein peptidyl-prolyl isomerization | 3.59E-05 |
| 16 | GO:0042372: phylloquinone biosynthetic process | 3.95E-05 |
| 17 | GO:0015979: photosynthesis | 8.12E-05 |
| 18 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.14E-04 |
| 19 | GO:1904964: positive regulation of phytol biosynthetic process | 1.14E-04 |
| 20 | GO:1902458: positive regulation of stomatal opening | 1.14E-04 |
| 21 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 1.14E-04 |
| 22 | GO:0045037: protein import into chloroplast stroma | 2.11E-04 |
| 23 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.65E-04 |
| 24 | GO:0006423: cysteinyl-tRNA aminoacylation | 2.65E-04 |
| 25 | GO:0060919: auxin influx | 2.65E-04 |
| 26 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.65E-04 |
| 27 | GO:0010207: photosystem II assembly | 2.74E-04 |
| 28 | GO:0042742: defense response to bacterium | 3.28E-04 |
| 29 | GO:0009658: chloroplast organization | 3.50E-04 |
| 30 | GO:0071492: cellular response to UV-A | 4.38E-04 |
| 31 | GO:2001295: malonyl-CoA biosynthetic process | 4.38E-04 |
| 32 | GO:0009793: embryo development ending in seed dormancy | 4.74E-04 |
| 33 | GO:0006241: CTP biosynthetic process | 6.29E-04 |
| 34 | GO:0006165: nucleoside diphosphate phosphorylation | 6.29E-04 |
| 35 | GO:0006228: UTP biosynthetic process | 6.29E-04 |
| 36 | GO:0006424: glutamyl-tRNA aminoacylation | 6.29E-04 |
| 37 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 6.29E-04 |
| 38 | GO:0006183: GTP biosynthetic process | 8.35E-04 |
| 39 | GO:0044206: UMP salvage | 8.35E-04 |
| 40 | GO:2000122: negative regulation of stomatal complex development | 8.35E-04 |
| 41 | GO:0010037: response to carbon dioxide | 8.35E-04 |
| 42 | GO:0006808: regulation of nitrogen utilization | 8.35E-04 |
| 43 | GO:0071486: cellular response to high light intensity | 8.35E-04 |
| 44 | GO:0043097: pyrimidine nucleoside salvage | 1.05E-03 |
| 45 | GO:0010236: plastoquinone biosynthetic process | 1.05E-03 |
| 46 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.05E-03 |
| 47 | GO:0031365: N-terminal protein amino acid modification | 1.05E-03 |
| 48 | GO:0006206: pyrimidine nucleobase metabolic process | 1.29E-03 |
| 49 | GO:0032973: amino acid export | 1.29E-03 |
| 50 | GO:0010190: cytochrome b6f complex assembly | 1.29E-03 |
| 51 | GO:0042549: photosystem II stabilization | 1.29E-03 |
| 52 | GO:0010027: thylakoid membrane organization | 1.30E-03 |
| 53 | GO:0009854: oxidative photosynthetic carbon pathway | 1.54E-03 |
| 54 | GO:0010555: response to mannitol | 1.54E-03 |
| 55 | GO:0009772: photosynthetic electron transport in photosystem II | 1.81E-03 |
| 56 | GO:0043090: amino acid import | 1.81E-03 |
| 57 | GO:0009642: response to light intensity | 2.09E-03 |
| 58 | GO:2000070: regulation of response to water deprivation | 2.09E-03 |
| 59 | GO:0007186: G-protein coupled receptor signaling pathway | 2.39E-03 |
| 60 | GO:0015996: chlorophyll catabolic process | 2.39E-03 |
| 61 | GO:0009409: response to cold | 2.47E-03 |
| 62 | GO:0010206: photosystem II repair | 2.70E-03 |
| 63 | GO:0080144: amino acid homeostasis | 2.70E-03 |
| 64 | GO:0043067: regulation of programmed cell death | 3.02E-03 |
| 65 | GO:0048829: root cap development | 3.36E-03 |
| 66 | GO:0006949: syncytium formation | 3.36E-03 |
| 67 | GO:0009773: photosynthetic electron transport in photosystem I | 3.71E-03 |
| 68 | GO:0043085: positive regulation of catalytic activity | 3.71E-03 |
| 69 | GO:0045454: cell redox homeostasis | 3.72E-03 |
| 70 | GO:0006006: glucose metabolic process | 4.43E-03 |
| 71 | GO:0010020: chloroplast fission | 4.81E-03 |
| 72 | GO:0019253: reductive pentose-phosphate cycle | 4.81E-03 |
| 73 | GO:0006636: unsaturated fatty acid biosynthetic process | 5.61E-03 |
| 74 | GO:0000027: ribosomal large subunit assembly | 6.03E-03 |
| 75 | GO:0019344: cysteine biosynthetic process | 6.03E-03 |
| 76 | GO:0009116: nucleoside metabolic process | 6.03E-03 |
| 77 | GO:0061077: chaperone-mediated protein folding | 6.89E-03 |
| 78 | GO:0003333: amino acid transmembrane transport | 6.89E-03 |
| 79 | GO:0009790: embryo development | 7.61E-03 |
| 80 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 7.79E-03 |
| 81 | GO:0009411: response to UV | 7.79E-03 |
| 82 | GO:0006633: fatty acid biosynthetic process | 8.20E-03 |
| 83 | GO:0016117: carotenoid biosynthetic process | 8.74E-03 |
| 84 | GO:0006662: glycerol ether metabolic process | 9.73E-03 |
| 85 | GO:0010197: polar nucleus fusion | 9.73E-03 |
| 86 | GO:0010182: sugar mediated signaling pathway | 9.73E-03 |
| 87 | GO:0002229: defense response to oomycetes | 1.13E-02 |
| 88 | GO:0032502: developmental process | 1.18E-02 |
| 89 | GO:0009828: plant-type cell wall loosening | 1.29E-02 |
| 90 | GO:0055085: transmembrane transport | 1.36E-02 |
| 91 | GO:0006457: protein folding | 1.40E-02 |
| 92 | GO:0010411: xyloglucan metabolic process | 1.64E-02 |
| 93 | GO:0009817: defense response to fungus, incompatible interaction | 1.77E-02 |
| 94 | GO:0018298: protein-chromophore linkage | 1.77E-02 |
| 95 | GO:0010311: lateral root formation | 1.83E-02 |
| 96 | GO:0010119: regulation of stomatal movement | 1.96E-02 |
| 97 | GO:0006865: amino acid transport | 2.02E-02 |
| 98 | GO:0009853: photorespiration | 2.09E-02 |
| 99 | GO:0034599: cellular response to oxidative stress | 2.16E-02 |
| 100 | GO:0006839: mitochondrial transport | 2.29E-02 |
| 101 | GO:0030001: metal ion transport | 2.29E-02 |
| 102 | GO:0042542: response to hydrogen peroxide | 2.43E-02 |
| 103 | GO:0009926: auxin polar transport | 2.50E-02 |
| 104 | GO:0042546: cell wall biogenesis | 2.57E-02 |
| 105 | GO:0009644: response to high light intensity | 2.65E-02 |
| 106 | GO:0009664: plant-type cell wall organization | 2.94E-02 |
| 107 | GO:0009585: red, far-red light phototransduction | 3.09E-02 |
| 108 | GO:0006096: glycolytic process | 3.49E-02 |
| 109 | GO:0009734: auxin-activated signaling pathway | 3.61E-02 |
| 110 | GO:0051726: regulation of cell cycle | 4.14E-02 |
| 111 | GO:0051301: cell division | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 2 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 3 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 4 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 5 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 6 | GO:0019843: rRNA binding | 4.37E-19 |
| 7 | GO:0003735: structural constituent of ribosome | 1.92E-18 |
| 8 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 9.14E-07 |
| 9 | GO:0051920: peroxiredoxin activity | 3.95E-05 |
| 10 | GO:0016209: antioxidant activity | 6.94E-05 |
| 11 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.14E-04 |
| 12 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 1.14E-04 |
| 13 | GO:0004089: carbonate dehydratase activity | 2.41E-04 |
| 14 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.65E-04 |
| 15 | GO:0042389: omega-3 fatty acid desaturase activity | 2.65E-04 |
| 16 | GO:0004817: cysteine-tRNA ligase activity | 2.65E-04 |
| 17 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 2.65E-04 |
| 18 | GO:0005528: FK506 binding | 3.83E-04 |
| 19 | GO:0017150: tRNA dihydrouridine synthase activity | 4.38E-04 |
| 20 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.38E-04 |
| 21 | GO:0004075: biotin carboxylase activity | 4.38E-04 |
| 22 | GO:0030267: glyoxylate reductase (NADP) activity | 4.38E-04 |
| 23 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 4.38E-04 |
| 24 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 4.38E-04 |
| 25 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 4.38E-04 |
| 26 | GO:0022891: substrate-specific transmembrane transporter activity | 5.51E-04 |
| 27 | GO:0004550: nucleoside diphosphate kinase activity | 6.29E-04 |
| 28 | GO:0008097: 5S rRNA binding | 6.29E-04 |
| 29 | GO:0010328: auxin influx transmembrane transporter activity | 8.35E-04 |
| 30 | GO:0043495: protein anchor | 8.35E-04 |
| 31 | GO:0004659: prenyltransferase activity | 8.35E-04 |
| 32 | GO:0004845: uracil phosphoribosyltransferase activity | 8.35E-04 |
| 33 | GO:0051011: microtubule minus-end binding | 1.05E-03 |
| 34 | GO:0003989: acetyl-CoA carboxylase activity | 1.05E-03 |
| 35 | GO:0016208: AMP binding | 1.29E-03 |
| 36 | GO:0016168: chlorophyll binding | 1.38E-03 |
| 37 | GO:0004849: uridine kinase activity | 1.54E-03 |
| 38 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 1.54E-03 |
| 39 | GO:0008236: serine-type peptidase activity | 1.61E-03 |
| 40 | GO:0019899: enzyme binding | 1.81E-03 |
| 41 | GO:0008235: metalloexopeptidase activity | 1.81E-03 |
| 42 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.39E-03 |
| 43 | GO:0047617: acyl-CoA hydrolase activity | 3.02E-03 |
| 44 | GO:0008047: enzyme activator activity | 3.36E-03 |
| 45 | GO:0004177: aminopeptidase activity | 3.71E-03 |
| 46 | GO:0015171: amino acid transmembrane transporter activity | 4.06E-03 |
| 47 | GO:0008266: poly(U) RNA binding | 4.81E-03 |
| 48 | GO:0047134: protein-disulfide reductase activity | 8.74E-03 |
| 49 | GO:0008080: N-acetyltransferase activity | 9.73E-03 |
| 50 | GO:0003713: transcription coactivator activity | 9.73E-03 |
| 51 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 9.73E-03 |
| 52 | GO:0050662: coenzyme binding | 1.02E-02 |
| 53 | GO:0004791: thioredoxin-disulfide reductase activity | 1.02E-02 |
| 54 | GO:0016853: isomerase activity | 1.02E-02 |
| 55 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.13E-02 |
| 56 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.24E-02 |
| 57 | GO:0004601: peroxidase activity | 1.40E-02 |
| 58 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.64E-02 |
| 59 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 1.89E-02 |
| 60 | GO:0003746: translation elongation factor activity | 2.09E-02 |
| 61 | GO:0050661: NADP binding | 2.29E-02 |
| 62 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.65E-02 |
| 63 | GO:0015293: symporter activity | 2.72E-02 |
| 64 | GO:0051287: NAD binding | 2.87E-02 |
| 65 | GO:0003777: microtubule motor activity | 3.33E-02 |
| 66 | GO:0015035: protein disulfide oxidoreductase activity | 4.06E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 6.65E-49 |
| 3 | GO:0009941: chloroplast envelope | 8.18E-43 |
| 4 | GO:0009570: chloroplast stroma | 4.38E-40 |
| 5 | GO:0009579: thylakoid | 2.25E-20 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 2.73E-19 |
| 7 | GO:0005840: ribosome | 3.39E-18 |
| 8 | GO:0031977: thylakoid lumen | 6.38E-18 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 1.80E-15 |
| 10 | GO:0010319: stromule | 2.74E-06 |
| 11 | GO:0000311: plastid large ribosomal subunit | 4.64E-06 |
| 12 | GO:0009534: chloroplast thylakoid | 1.22E-05 |
| 13 | GO:0009536: plastid | 1.42E-05 |
| 14 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.14E-04 |
| 15 | GO:0009547: plastid ribosome | 1.14E-04 |
| 16 | GO:0042170: plastid membrane | 2.65E-04 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 4.22E-04 |
| 18 | GO:0009528: plastid inner membrane | 4.38E-04 |
| 19 | GO:0015935: small ribosomal subunit | 4.64E-04 |
| 20 | GO:0009706: chloroplast inner membrane | 6.63E-04 |
| 21 | GO:0009527: plastid outer membrane | 8.35E-04 |
| 22 | GO:0009523: photosystem II | 8.60E-04 |
| 23 | GO:0019898: extrinsic component of membrane | 8.60E-04 |
| 24 | GO:0048046: apoplast | 1.28E-03 |
| 25 | GO:0015934: large ribosomal subunit | 1.95E-03 |
| 26 | GO:0022626: cytosolic ribosome | 1.96E-03 |
| 27 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.70E-03 |
| 28 | GO:0031969: chloroplast membrane | 2.96E-03 |
| 29 | GO:0005876: spindle microtubule | 3.02E-03 |
| 30 | GO:0030095: chloroplast photosystem II | 4.81E-03 |
| 31 | GO:0000312: plastid small ribosomal subunit | 4.81E-03 |
| 32 | GO:0042651: thylakoid membrane | 6.45E-03 |
| 33 | GO:0009532: plastid stroma | 6.89E-03 |
| 34 | GO:0016592: mediator complex | 1.18E-02 |
| 35 | GO:0005778: peroxisomal membrane | 1.35E-02 |
| 36 | GO:0005874: microtubule | 1.68E-02 |
| 37 | GO:0009707: chloroplast outer membrane | 1.77E-02 |
| 38 | GO:0022625: cytosolic large ribosomal subunit | 1.83E-02 |
| 39 | GO:0016020: membrane | 2.16E-02 |
| 40 | GO:0005819: spindle | 2.22E-02 |
| 41 | GO:0005739: mitochondrion | 4.42E-02 |
| 42 | GO:0010287: plastoglobule | 4.49E-02 |
| 43 | GO:0005623: cell | 4.75E-02 |
| 44 | GO:0009524: phragmoplast | 4.84E-02 |