Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G34590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0006223: uracil salvage0.00E+00
4GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0010394: homogalacturonan metabolic process0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0005996: monosaccharide metabolic process0.00E+00
9GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
10GO:0032544: plastid translation1.84E-07
11GO:0006546: glycine catabolic process5.24E-07
12GO:0015979: photosynthesis5.72E-07
13GO:0009773: photosynthetic electron transport in photosystem I9.47E-07
14GO:0009658: chloroplast organization1.71E-06
15GO:0015976: carbon utilization6.70E-05
16GO:0010207: photosystem II assembly7.88E-05
17GO:0042549: photosystem II stabilization1.52E-04
18GO:0010190: cytochrome b6f complex assembly1.52E-04
19GO:0042335: cuticle development3.09E-04
20GO:1904964: positive regulation of phytol biosynthetic process3.24E-04
21GO:0033481: galacturonate biosynthetic process3.24E-04
22GO:0045488: pectin metabolic process3.24E-04
23GO:1902458: positive regulation of stomatal opening3.24E-04
24GO:0071588: hydrogen peroxide mediated signaling pathway3.24E-04
25GO:0043489: RNA stabilization3.24E-04
26GO:1904966: positive regulation of vitamin E biosynthetic process3.24E-04
27GO:0007155: cell adhesion3.40E-04
28GO:0071482: cellular response to light stimulus4.17E-04
29GO:0009657: plastid organization4.17E-04
30GO:0009409: response to cold4.19E-04
31GO:0006096: glycolytic process5.72E-04
32GO:0046686: response to cadmium ion6.10E-04
33GO:0080183: response to photooxidative stress7.07E-04
34GO:1903426: regulation of reactive oxygen species biosynthetic process7.07E-04
35GO:0030388: fructose 1,6-bisphosphate metabolic process7.07E-04
36GO:0010275: NAD(P)H dehydrogenase complex assembly7.07E-04
37GO:1902326: positive regulation of chlorophyll biosynthetic process7.07E-04
38GO:0010027: thylakoid membrane organization7.22E-04
39GO:0006352: DNA-templated transcription, initiation7.96E-04
40GO:0018119: peptidyl-cysteine S-nitrosylation7.96E-04
41GO:0009073: aromatic amino acid family biosynthetic process7.96E-04
42GO:0018298: protein-chromophore linkage1.01E-03
43GO:0006094: gluconeogenesis1.03E-03
44GO:0009767: photosynthetic electron transport chain1.03E-03
45GO:0006696: ergosterol biosynthetic process1.15E-03
46GO:2001295: malonyl-CoA biosynthetic process1.15E-03
47GO:0006000: fructose metabolic process1.15E-03
48GO:0006518: peptide metabolic process1.15E-03
49GO:0009062: fatty acid catabolic process1.15E-03
50GO:0019253: reductive pentose-phosphate cycle1.16E-03
51GO:0009735: response to cytokinin1.35E-03
52GO:0010025: wax biosynthetic process1.44E-03
53GO:0006633: fatty acid biosynthetic process1.50E-03
54GO:0006810: transport1.59E-03
55GO:0016556: mRNA modification1.65E-03
56GO:2001141: regulation of RNA biosynthetic process1.65E-03
57GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.65E-03
58GO:0006424: glutamyl-tRNA aminoacylation1.65E-03
59GO:0009768: photosynthesis, light harvesting in photosystem I1.76E-03
60GO:0007017: microtubule-based process1.76E-03
61GO:0031408: oxylipin biosynthetic process1.93E-03
62GO:0080092: regulation of pollen tube growth2.11E-03
63GO:0071483: cellular response to blue light2.21E-03
64GO:0044206: UMP salvage2.21E-03
65GO:0010037: response to carbon dioxide2.21E-03
66GO:0019464: glycine decarboxylation via glycine cleavage system2.21E-03
67GO:0045727: positive regulation of translation2.21E-03
68GO:2000122: negative regulation of stomatal complex development2.21E-03
69GO:0031122: cytoplasmic microtubule organization2.21E-03
70GO:0016117: carotenoid biosynthetic process2.71E-03
71GO:0006564: L-serine biosynthetic process2.82E-03
72GO:0010236: plastoquinone biosynthetic process2.82E-03
73GO:0045038: protein import into chloroplast thylakoid membrane2.82E-03
74GO:0043097: pyrimidine nucleoside salvage2.82E-03
75GO:0031365: N-terminal protein amino acid modification2.82E-03
76GO:0006461: protein complex assembly2.82E-03
77GO:0009107: lipoate biosynthetic process2.82E-03
78GO:0000304: response to singlet oxygen2.82E-03
79GO:0032543: mitochondrial translation2.82E-03
80GO:0006555: methionine metabolic process3.49E-03
81GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.49E-03
82GO:0006206: pyrimidine nucleobase metabolic process3.49E-03
83GO:1901259: chloroplast rRNA processing4.20E-03
84GO:0010189: vitamin E biosynthetic process4.20E-03
85GO:0009854: oxidative photosynthetic carbon pathway4.20E-03
86GO:0010019: chloroplast-nucleus signaling pathway4.20E-03
87GO:0009955: adaxial/abaxial pattern specification4.20E-03
88GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.20E-03
89GO:0006694: steroid biosynthetic process4.20E-03
90GO:0006400: tRNA modification4.95E-03
91GO:0050829: defense response to Gram-negative bacterium4.95E-03
92GO:0030497: fatty acid elongation4.95E-03
93GO:0010196: nonphotochemical quenching4.95E-03
94GO:0009645: response to low light intensity stimulus4.95E-03
95GO:2000070: regulation of response to water deprivation5.76E-03
96GO:0048564: photosystem I assembly5.76E-03
97GO:0008610: lipid biosynthetic process5.76E-03
98GO:0042128: nitrate assimilation6.29E-03
99GO:0071555: cell wall organization6.51E-03
100GO:0009808: lignin metabolic process6.60E-03
101GO:0006002: fructose 6-phosphate metabolic process6.60E-03
102GO:0015996: chlorophyll catabolic process6.60E-03
103GO:0007186: G-protein coupled receptor signaling pathway6.60E-03
104GO:0015995: chlorophyll biosynthetic process6.63E-03
105GO:0006869: lipid transport7.10E-03
106GO:0009817: defense response to fungus, incompatible interaction7.35E-03
107GO:0006754: ATP biosynthetic process7.48E-03
108GO:0048589: developmental growth7.48E-03
109GO:0000902: cell morphogenesis7.48E-03
110GO:0006098: pentose-phosphate shunt7.48E-03
111GO:0035999: tetrahydrofolate interconversion8.41E-03
112GO:0042761: very long-chain fatty acid biosynthetic process8.41E-03
113GO:0009631: cold acclimation8.51E-03
114GO:0009637: response to blue light9.33E-03
115GO:0048829: root cap development9.37E-03
116GO:0006535: cysteine biosynthetic process from serine9.37E-03
117GO:0019538: protein metabolic process9.37E-03
118GO:0000272: polysaccharide catabolic process1.04E-02
119GO:0006415: translational termination1.04E-02
120GO:0000038: very long-chain fatty acid metabolic process1.04E-02
121GO:0045037: protein import into chloroplast stroma1.14E-02
122GO:0010114: response to red light1.21E-02
123GO:0005986: sucrose biosynthetic process1.25E-02
124GO:0010143: cutin biosynthetic process1.36E-02
125GO:0010020: chloroplast fission1.36E-02
126GO:0090351: seedling development1.48E-02
127GO:0009969: xyloglucan biosynthetic process1.48E-02
128GO:0009225: nucleotide-sugar metabolic process1.48E-02
129GO:0007010: cytoskeleton organization1.72E-02
130GO:0019344: cysteine biosynthetic process1.72E-02
131GO:0009116: nucleoside metabolic process1.72E-02
132GO:0006418: tRNA aminoacylation for protein translation1.84E-02
133GO:0009695: jasmonic acid biosynthetic process1.84E-02
134GO:0003333: amino acid transmembrane transport1.97E-02
135GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.05E-02
136GO:0006730: one-carbon metabolic process2.10E-02
137GO:0040007: growth2.23E-02
138GO:0009294: DNA mediated transformation2.23E-02
139GO:0019722: calcium-mediated signaling2.37E-02
140GO:0042631: cellular response to water deprivation2.65E-02
141GO:0010182: sugar mediated signaling pathway2.80E-02
142GO:0045489: pectin biosynthetic process2.80E-02
143GO:0055114: oxidation-reduction process2.82E-02
144GO:0032259: methylation3.04E-02
145GO:0019252: starch biosynthetic process3.10E-02
146GO:0008654: phospholipid biosynthetic process3.10E-02
147GO:0006635: fatty acid beta-oxidation3.25E-02
148GO:0016132: brassinosteroid biosynthetic process3.25E-02
149GO:0000302: response to reactive oxygen species3.25E-02
150GO:0032502: developmental process3.41E-02
151GO:0010583: response to cyclopentenone3.41E-02
152GO:0010090: trichome morphogenesis3.57E-02
153GO:1901657: glycosyl compound metabolic process3.57E-02
154GO:0006413: translational initiation3.74E-02
155GO:0007267: cell-cell signaling3.89E-02
156GO:0010286: heat acclimation3.89E-02
157GO:0071805: potassium ion transmembrane transport3.89E-02
158GO:0016126: sterol biosynthetic process4.23E-02
159GO:0001666: response to hypoxia4.23E-02
160GO:0009607: response to biotic stimulus4.40E-02
161GO:0010411: xyloglucan metabolic process4.75E-02
162GO:0016311: dephosphorylation4.92E-02
RankGO TermAdjusted P value
1GO:0004822: isoleucine-tRNA ligase activity0.00E+00
2GO:0046905: phytoene synthase activity0.00E+00
3GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
4GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
5GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
6GO:0050614: delta24-sterol reductase activity0.00E+00
7GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
8GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
9GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
10GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
11GO:0008887: glycerate kinase activity0.00E+00
12GO:0050613: delta14-sterol reductase activity0.00E+00
13GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
14GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
15GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
16GO:0019843: rRNA binding8.69E-08
17GO:0004148: dihydrolipoyl dehydrogenase activity1.69E-05
18GO:0001053: plastid sigma factor activity6.70E-05
19GO:0016987: sigma factor activity6.70E-05
20GO:0051996: squalene synthase activity3.24E-04
21GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.24E-04
22GO:0008809: carnitine racemase activity3.24E-04
23GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.24E-04
24GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.24E-04
25GO:0009496: plastoquinol--plastocyanin reductase activity3.24E-04
26GO:0008568: microtubule-severing ATPase activity3.24E-04
27GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.24E-04
28GO:0004321: fatty-acyl-CoA synthase activity3.24E-04
29GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity3.24E-04
30GO:0005200: structural constituent of cytoskeleton6.24E-04
31GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.07E-04
32GO:0008967: phosphoglycolate phosphatase activity7.07E-04
33GO:0050017: L-3-cyanoalanine synthase activity7.07E-04
34GO:0004618: phosphoglycerate kinase activity7.07E-04
35GO:0010297: heteropolysaccharide binding7.07E-04
36GO:0004617: phosphoglycerate dehydrogenase activity7.07E-04
37GO:0004047: aminomethyltransferase activity7.07E-04
38GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.07E-04
39GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.07E-04
40GO:0016168: chlorophyll binding7.74E-04
41GO:0005089: Rho guanyl-nucleotide exchange factor activity7.96E-04
42GO:0004089: carbonate dehydratase activity1.03E-03
43GO:0031072: heat shock protein binding1.03E-03
44GO:0004075: biotin carboxylase activity1.15E-03
45GO:0030267: glyoxylate reductase (NADP) activity1.15E-03
46GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.15E-03
47GO:0070330: aromatase activity1.15E-03
48GO:0016992: lipoate synthase activity1.15E-03
49GO:0002161: aminoacyl-tRNA editing activity1.15E-03
50GO:0031409: pigment binding1.44E-03
51GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.65E-03
52GO:0004165: dodecenoyl-CoA delta-isomerase activity1.65E-03
53GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.65E-03
54GO:0004375: glycine dehydrogenase (decarboxylating) activity1.65E-03
55GO:0016149: translation release factor activity, codon specific1.65E-03
56GO:0051537: 2 iron, 2 sulfur cluster binding2.06E-03
57GO:0043495: protein anchor2.21E-03
58GO:0004845: uracil phosphoribosyltransferase activity2.21E-03
59GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.21E-03
60GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.21E-03
61GO:0010328: auxin influx transmembrane transporter activity2.21E-03
62GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.21E-03
63GO:0050378: UDP-glucuronate 4-epimerase activity2.21E-03
64GO:0003824: catalytic activity2.53E-03
65GO:0003989: acetyl-CoA carboxylase activity2.82E-03
66GO:0008374: O-acyltransferase activity2.82E-03
67GO:0009922: fatty acid elongase activity2.82E-03
68GO:0018685: alkane 1-monooxygenase activity2.82E-03
69GO:0016773: phosphotransferase activity, alcohol group as acceptor2.82E-03
70GO:0016688: L-ascorbate peroxidase activity3.49E-03
71GO:0042578: phosphoric ester hydrolase activity3.49E-03
72GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.49E-03
73GO:0004332: fructose-bisphosphate aldolase activity3.49E-03
74GO:0004130: cytochrome-c peroxidase activity3.49E-03
75GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.20E-03
76GO:0004124: cysteine synthase activity4.20E-03
77GO:0051753: mannan synthase activity4.20E-03
78GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.20E-03
79GO:0004849: uridine kinase activity4.20E-03
80GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.20E-03
81GO:0005525: GTP binding4.33E-03
82GO:0004620: phospholipase activity4.95E-03
83GO:0008235: metalloexopeptidase activity4.95E-03
84GO:0019899: enzyme binding4.95E-03
85GO:0004033: aldo-keto reductase (NADP) activity5.76E-03
86GO:0052747: sinapyl alcohol dehydrogenase activity5.76E-03
87GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.48E-03
88GO:0003747: translation release factor activity7.48E-03
89GO:0016207: 4-coumarate-CoA ligase activity7.48E-03
90GO:0016740: transferase activity8.25E-03
91GO:0003924: GTPase activity8.48E-03
92GO:0004177: aminopeptidase activity1.04E-02
93GO:0047372: acylglycerol lipase activity1.04E-02
94GO:0000049: tRNA binding1.14E-02
95GO:0045551: cinnamyl-alcohol dehydrogenase activity1.14E-02
96GO:0008378: galactosyltransferase activity1.14E-02
97GO:0004565: beta-galactosidase activity1.25E-02
98GO:0008266: poly(U) RNA binding1.36E-02
99GO:0015293: symporter activity1.36E-02
100GO:0005198: structural molecule activity1.36E-02
101GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.36E-02
102GO:0008289: lipid binding1.40E-02
103GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.41E-02
104GO:0008168: methyltransferase activity1.43E-02
105GO:0046872: metal ion binding1.55E-02
106GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.60E-02
107GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.60E-02
108GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.60E-02
109GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.63E-02
110GO:0005528: FK506 binding1.72E-02
111GO:0005509: calcium ion binding1.72E-02
112GO:0043424: protein histidine kinase binding1.84E-02
113GO:0015079: potassium ion transmembrane transporter activity1.84E-02
114GO:0019706: protein-cysteine S-palmitoyltransferase activity1.97E-02
115GO:0016874: ligase activity2.19E-02
116GO:0022891: substrate-specific transmembrane transporter activity2.23E-02
117GO:0051082: unfolded protein binding2.32E-02
118GO:0016746: transferase activity, transferring acyl groups2.39E-02
119GO:0003735: structural constituent of ribosome2.44E-02
120GO:0004812: aminoacyl-tRNA ligase activity2.51E-02
121GO:0050662: coenzyme binding2.95E-02
122GO:0016762: xyloglucan:xyloglucosyl transferase activity3.25E-02
123GO:0048038: quinone binding3.25E-02
124GO:0003723: RNA binding3.47E-02
125GO:0000156: phosphorelay response regulator activity3.57E-02
126GO:0016791: phosphatase activity3.73E-02
127GO:0016759: cellulose synthase activity3.73E-02
128GO:0003729: mRNA binding3.84E-02
129GO:0008483: transaminase activity3.89E-02
130GO:0016722: oxidoreductase activity, oxidizing metal ions3.89E-02
131GO:0016597: amino acid binding4.06E-02
132GO:0009931: calcium-dependent protein serine/threonine kinase activity4.57E-02
133GO:0003743: translation initiation factor activity4.67E-02
134GO:0004683: calmodulin-dependent protein kinase activity4.75E-02
135GO:0016798: hydrolase activity, acting on glycosyl bonds4.75E-02
136GO:0102483: scopolin beta-glucosidase activity4.75E-02
137GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.92E-02
138GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.92E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009507: chloroplast5.71E-40
3GO:0009941: chloroplast envelope7.23E-28
4GO:0009570: chloroplast stroma3.22E-23
5GO:0009535: chloroplast thylakoid membrane1.85E-22
6GO:0009534: chloroplast thylakoid2.22E-13
7GO:0009579: thylakoid2.94E-12
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.80E-09
9GO:0009543: chloroplast thylakoid lumen4.30E-09
10GO:0009654: photosystem II oxygen evolving complex1.47E-07
11GO:0031977: thylakoid lumen1.18E-06
12GO:0030095: chloroplast photosystem II2.38E-06
13GO:0048046: apoplast2.30E-05
14GO:0019898: extrinsic component of membrane3.03E-05
15GO:0009344: nitrite reductase complex [NAD(P)H]3.24E-04
16GO:0009782: photosystem I antenna complex3.24E-04
17GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.24E-04
18GO:0009523: photosystem II4.13E-04
19GO:0045298: tubulin complex5.01E-04
20GO:0010319: stromule6.24E-04
21GO:0000427: plastid-encoded plastid RNA polymerase complex7.07E-04
22GO:0016020: membrane9.48E-04
23GO:0010287: plastoglobule9.82E-04
24GO:0009528: plastid inner membrane1.15E-03
25GO:0000312: plastid small ribosomal subunit1.16E-03
26GO:0030076: light-harvesting complex1.29E-03
27GO:0015630: microtubule cytoskeleton1.65E-03
28GO:0005960: glycine cleavage complex1.65E-03
29GO:0042651: thylakoid membrane1.76E-03
30GO:0009532: plastid stroma1.93E-03
31GO:0009527: plastid outer membrane2.21E-03
32GO:0005618: cell wall2.66E-03
33GO:0046658: anchored component of plasma membrane2.66E-03
34GO:0009512: cytochrome b6f complex2.82E-03
35GO:0009533: chloroplast stromal thylakoid4.95E-03
36GO:0009539: photosystem II reaction center6.60E-03
37GO:0005840: ribosome7.14E-03
38GO:0005763: mitochondrial small ribosomal subunit7.48E-03
39GO:0005759: mitochondrial matrix7.61E-03
40GO:0016324: apical plasma membrane9.37E-03
41GO:0009505: plant-type cell wall1.01E-02
42GO:0031225: anchored component of membrane1.26E-02
43GO:0030659: cytoplasmic vesicle membrane1.36E-02
44GO:0005773: vacuole1.39E-02
45GO:0016021: integral component of membrane1.44E-02
46GO:0030176: integral component of endoplasmic reticulum membrane1.48E-02
47GO:0043234: protein complex1.60E-02
48GO:0022626: cytosolic ribosome1.88E-02
49GO:0005874: microtubule1.88E-02
50GO:0005794: Golgi apparatus1.90E-02
51GO:0015935: small ribosomal subunit1.97E-02
52GO:0009706: chloroplast inner membrane2.32E-02
53GO:0009536: plastid2.79E-02
54GO:0009522: photosystem I2.95E-02
55GO:0005886: plasma membrane3.62E-02
56GO:0032580: Golgi cisterna membrane3.73E-02
57GO:0005802: trans-Golgi network4.02E-02
58GO:0030529: intracellular ribonucleoprotein complex4.23E-02
59GO:0005768: endosome4.82E-02
<
Gene type



Gene DE type