GO Enrichment Analysis of Co-expressed Genes with
AT2G34460
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 2 | GO:0098586: cellular response to virus | 0.00E+00 |
| 3 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 4 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
| 5 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 6 | GO:0016120: carotene biosynthetic process | 1.85E-05 |
| 7 | GO:0009642: response to light intensity | 6.94E-05 |
| 8 | GO:0043953: protein transport by the Tat complex | 1.14E-04 |
| 9 | GO:0051775: response to redox state | 1.14E-04 |
| 10 | GO:0046467: membrane lipid biosynthetic process | 1.14E-04 |
| 11 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.14E-04 |
| 12 | GO:1904964: positive regulation of phytol biosynthetic process | 1.14E-04 |
| 13 | GO:0065002: intracellular protein transmembrane transport | 1.14E-04 |
| 14 | GO:0043686: co-translational protein modification | 1.14E-04 |
| 15 | GO:0034337: RNA folding | 1.14E-04 |
| 16 | GO:0000305: response to oxygen radical | 1.14E-04 |
| 17 | GO:0009773: photosynthetic electron transport in photosystem I | 1.82E-04 |
| 18 | GO:0080005: photosystem stoichiometry adjustment | 2.65E-04 |
| 19 | GO:0016122: xanthophyll metabolic process | 2.65E-04 |
| 20 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.65E-04 |
| 21 | GO:0046741: transport of virus in host, tissue to tissue | 2.65E-04 |
| 22 | GO:0009915: phloem sucrose loading | 2.65E-04 |
| 23 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.65E-04 |
| 24 | GO:0010020: chloroplast fission | 2.74E-04 |
| 25 | GO:0009644: response to high light intensity | 3.19E-04 |
| 26 | GO:0016050: vesicle organization | 4.38E-04 |
| 27 | GO:0031022: nuclear migration along microfilament | 4.38E-04 |
| 28 | GO:0015979: photosynthesis | 6.00E-04 |
| 29 | GO:0043572: plastid fission | 6.29E-04 |
| 30 | GO:0010371: regulation of gibberellin biosynthetic process | 6.29E-04 |
| 31 | GO:0071484: cellular response to light intensity | 6.29E-04 |
| 32 | GO:0006107: oxaloacetate metabolic process | 6.29E-04 |
| 33 | GO:0080170: hydrogen peroxide transmembrane transport | 6.29E-04 |
| 34 | GO:0055114: oxidation-reduction process | 7.72E-04 |
| 35 | GO:0006749: glutathione metabolic process | 8.35E-04 |
| 36 | GO:0006734: NADH metabolic process | 8.35E-04 |
| 37 | GO:0010021: amylopectin biosynthetic process | 8.35E-04 |
| 38 | GO:0009765: photosynthesis, light harvesting | 8.35E-04 |
| 39 | GO:0006109: regulation of carbohydrate metabolic process | 8.35E-04 |
| 40 | GO:0015994: chlorophyll metabolic process | 8.35E-04 |
| 41 | GO:0019252: starch biosynthetic process | 8.60E-04 |
| 42 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 9.17E-04 |
| 43 | GO:0010117: photoprotection | 1.05E-03 |
| 44 | GO:0009904: chloroplast accumulation movement | 1.05E-03 |
| 45 | GO:0031365: N-terminal protein amino acid modification | 1.05E-03 |
| 46 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.29E-03 |
| 47 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.29E-03 |
| 48 | GO:0007623: circadian rhythm | 1.30E-03 |
| 49 | GO:0010027: thylakoid membrane organization | 1.30E-03 |
| 50 | GO:0016126: sterol biosynthetic process | 1.30E-03 |
| 51 | GO:1901259: chloroplast rRNA processing | 1.54E-03 |
| 52 | GO:0009903: chloroplast avoidance movement | 1.54E-03 |
| 53 | GO:0010189: vitamin E biosynthetic process | 1.54E-03 |
| 54 | GO:0018298: protein-chromophore linkage | 1.69E-03 |
| 55 | GO:1900057: positive regulation of leaf senescence | 1.81E-03 |
| 56 | GO:0010444: guard mother cell differentiation | 1.81E-03 |
| 57 | GO:0009395: phospholipid catabolic process | 1.81E-03 |
| 58 | GO:0030091: protein repair | 2.09E-03 |
| 59 | GO:0016559: peroxisome fission | 2.09E-03 |
| 60 | GO:0034599: cellular response to oxidative stress | 2.23E-03 |
| 61 | GO:0000373: Group II intron splicing | 2.70E-03 |
| 62 | GO:0055085: transmembrane transport | 3.01E-03 |
| 63 | GO:0043085: positive regulation of catalytic activity | 3.71E-03 |
| 64 | GO:0008285: negative regulation of cell proliferation | 3.71E-03 |
| 65 | GO:0006857: oligopeptide transport | 3.93E-03 |
| 66 | GO:0005983: starch catabolic process | 4.06E-03 |
| 67 | GO:0006108: malate metabolic process | 4.43E-03 |
| 68 | GO:0009718: anthocyanin-containing compound biosynthetic process | 4.43E-03 |
| 69 | GO:0010207: photosystem II assembly | 4.81E-03 |
| 70 | GO:0009266: response to temperature stimulus | 4.81E-03 |
| 71 | GO:0006833: water transport | 5.61E-03 |
| 72 | GO:0010073: meristem maintenance | 6.45E-03 |
| 73 | GO:0051302: regulation of cell division | 6.45E-03 |
| 74 | GO:0008299: isoprenoid biosynthetic process | 6.45E-03 |
| 75 | GO:0010227: floral organ abscission | 7.79E-03 |
| 76 | GO:0006817: phosphate ion transport | 8.26E-03 |
| 77 | GO:0042127: regulation of cell proliferation | 8.26E-03 |
| 78 | GO:0009306: protein secretion | 8.26E-03 |
| 79 | GO:0016117: carotenoid biosynthetic process | 8.74E-03 |
| 80 | GO:0034220: ion transmembrane transport | 9.23E-03 |
| 81 | GO:0000413: protein peptidyl-prolyl isomerization | 9.23E-03 |
| 82 | GO:0006662: glycerol ether metabolic process | 9.73E-03 |
| 83 | GO:0007018: microtubule-based movement | 1.02E-02 |
| 84 | GO:0000302: response to reactive oxygen species | 1.13E-02 |
| 85 | GO:0009567: double fertilization forming a zygote and endosperm | 1.29E-02 |
| 86 | GO:0071805: potassium ion transmembrane transport | 1.35E-02 |
| 87 | GO:0009658: chloroplast organization | 1.40E-02 |
| 88 | GO:0007049: cell cycle | 1.56E-02 |
| 89 | GO:0009627: systemic acquired resistance | 1.58E-02 |
| 90 | GO:0042128: nitrate assimilation | 1.58E-02 |
| 91 | GO:0015995: chlorophyll biosynthetic process | 1.64E-02 |
| 92 | GO:0000160: phosphorelay signal transduction system | 1.83E-02 |
| 93 | GO:0045454: cell redox homeostasis | 2.08E-02 |
| 94 | GO:0006099: tricarboxylic acid cycle | 2.16E-02 |
| 95 | GO:0006631: fatty acid metabolic process | 2.36E-02 |
| 96 | GO:0006979: response to oxidative stress | 2.48E-02 |
| 97 | GO:0009640: photomorphogenesis | 2.50E-02 |
| 98 | GO:0009753: response to jasmonic acid | 2.75E-02 |
| 99 | GO:0031347: regulation of defense response | 2.87E-02 |
| 100 | GO:0006364: rRNA processing | 3.09E-02 |
| 101 | GO:0006813: potassium ion transport | 3.09E-02 |
| 102 | GO:0009736: cytokinin-activated signaling pathway | 3.09E-02 |
| 103 | GO:0006096: glycolytic process | 3.49E-02 |
| 104 | GO:0043086: negative regulation of catalytic activity | 3.49E-02 |
| 105 | GO:0048316: seed development | 3.57E-02 |
| 106 | GO:0006810: transport | 3.95E-02 |
| 107 | GO:0005975: carbohydrate metabolic process | 4.11E-02 |
| 108 | GO:0051726: regulation of cell cycle | 4.14E-02 |
| 109 | GO:0009611: response to wounding | 4.63E-02 |
| 110 | GO:0051301: cell division | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 2 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 3 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 4 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 5 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 6 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 7 | GO:0045436: lycopene beta cyclase activity | 0.00E+00 |
| 8 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 9 | GO:0009673: low-affinity phosphate transmembrane transporter activity | 0.00E+00 |
| 10 | GO:0009976: tocopherol cyclase activity | 0.00E+00 |
| 11 | GO:0009011: starch synthase activity | 1.12E-05 |
| 12 | GO:0004506: squalene monooxygenase activity | 1.12E-05 |
| 13 | GO:0042586: peptide deformylase activity | 1.14E-04 |
| 14 | GO:0019203: carbohydrate phosphatase activity | 1.14E-04 |
| 15 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.14E-04 |
| 16 | GO:0004328: formamidase activity | 1.14E-04 |
| 17 | GO:0035671: enone reductase activity | 1.14E-04 |
| 18 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.14E-04 |
| 19 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.14E-04 |
| 20 | GO:0050308: sugar-phosphatase activity | 1.14E-04 |
| 21 | GO:0042802: identical protein binding | 2.55E-04 |
| 22 | GO:0004362: glutathione-disulfide reductase activity | 2.65E-04 |
| 23 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 2.65E-04 |
| 24 | GO:0033201: alpha-1,4-glucan synthase activity | 2.65E-04 |
| 25 | GO:0070402: NADPH binding | 4.38E-04 |
| 26 | GO:0004373: glycogen (starch) synthase activity | 4.38E-04 |
| 27 | GO:0022891: substrate-specific transmembrane transporter activity | 5.51E-04 |
| 28 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 6.29E-04 |
| 29 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 6.29E-04 |
| 30 | GO:0016853: isomerase activity | 8.05E-04 |
| 31 | GO:0043495: protein anchor | 8.35E-04 |
| 32 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 8.35E-04 |
| 33 | GO:0035673: oligopeptide transmembrane transporter activity | 1.29E-03 |
| 34 | GO:0042578: phosphoric ester hydrolase activity | 1.29E-03 |
| 35 | GO:0016615: malate dehydrogenase activity | 1.29E-03 |
| 36 | GO:2001070: starch binding | 1.29E-03 |
| 37 | GO:0016168: chlorophyll binding | 1.38E-03 |
| 38 | GO:0030060: L-malate dehydrogenase activity | 1.54E-03 |
| 39 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 1.54E-03 |
| 40 | GO:0019899: enzyme binding | 1.81E-03 |
| 41 | GO:0016788: hydrolase activity, acting on ester bonds | 2.31E-03 |
| 42 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 2.70E-03 |
| 43 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 2.70E-03 |
| 44 | GO:0050660: flavin adenine dinucleotide binding | 2.71E-03 |
| 45 | GO:0015293: symporter activity | 3.07E-03 |
| 46 | GO:0008047: enzyme activator activity | 3.36E-03 |
| 47 | GO:0015198: oligopeptide transporter activity | 4.06E-03 |
| 48 | GO:0005315: inorganic phosphate transmembrane transporter activity | 4.43E-03 |
| 49 | GO:0004565: beta-galactosidase activity | 4.43E-03 |
| 50 | GO:0008131: primary amine oxidase activity | 4.81E-03 |
| 51 | GO:0004857: enzyme inhibitor activity | 6.03E-03 |
| 52 | GO:0015079: potassium ion transmembrane transporter activity | 6.45E-03 |
| 53 | GO:0043424: protein histidine kinase binding | 6.45E-03 |
| 54 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 6.70E-03 |
| 55 | GO:0004176: ATP-dependent peptidase activity | 6.89E-03 |
| 56 | GO:0047134: protein-disulfide reductase activity | 8.74E-03 |
| 57 | GO:0008017: microtubule binding | 9.43E-03 |
| 58 | GO:0004791: thioredoxin-disulfide reductase activity | 1.02E-02 |
| 59 | GO:0000156: phosphorelay response regulator activity | 1.24E-02 |
| 60 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.24E-02 |
| 61 | GO:0015250: water channel activity | 1.46E-02 |
| 62 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 1.89E-02 |
| 63 | GO:0030145: manganese ion binding | 1.96E-02 |
| 64 | GO:0003993: acid phosphatase activity | 2.16E-02 |
| 65 | GO:0050661: NADP binding | 2.29E-02 |
| 66 | GO:0005215: transporter activity | 2.78E-02 |
| 67 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.79E-02 |
| 68 | GO:0003777: microtubule motor activity | 3.33E-02 |
| 69 | GO:0031625: ubiquitin protein ligase binding | 3.33E-02 |
| 70 | GO:0016491: oxidoreductase activity | 3.45E-02 |
| 71 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.73E-02 |
| 72 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.73E-02 |
| 73 | GO:0015035: protein disulfide oxidoreductase activity | 4.06E-02 |
| 74 | GO:0019843: rRNA binding | 4.67E-02 |
| 75 | GO:0016829: lyase activity | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010240: plastid pyruvate dehydrogenase complex | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 6.82E-26 |
| 4 | GO:0009570: chloroplast stroma | 1.48E-11 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.73E-09 |
| 6 | GO:0009534: chloroplast thylakoid | 4.38E-09 |
| 7 | GO:0009941: chloroplast envelope | 1.46E-08 |
| 8 | GO:0033281: TAT protein transport complex | 2.51E-06 |
| 9 | GO:0009579: thylakoid | 9.99E-05 |
| 10 | GO:0031361: integral component of thylakoid membrane | 1.14E-04 |
| 11 | GO:0009706: chloroplast inner membrane | 6.63E-04 |
| 12 | GO:0009523: photosystem II | 8.60E-04 |
| 13 | GO:0009707: chloroplast outer membrane | 1.69E-03 |
| 14 | GO:0009533: chloroplast stromal thylakoid | 1.81E-03 |
| 15 | GO:0009501: amyloplast | 2.09E-03 |
| 16 | GO:0031977: thylakoid lumen | 2.52E-03 |
| 17 | GO:0008180: COP9 signalosome | 2.70E-03 |
| 18 | GO:0032040: small-subunit processome | 4.06E-03 |
| 19 | GO:0009508: plastid chromosome | 4.43E-03 |
| 20 | GO:0010287: plastoglobule | 6.18E-03 |
| 21 | GO:0042651: thylakoid membrane | 6.45E-03 |
| 22 | GO:0009654: photosystem II oxygen evolving complex | 6.45E-03 |
| 23 | GO:0009543: chloroplast thylakoid lumen | 6.52E-03 |
| 24 | GO:0005623: cell | 6.70E-03 |
| 25 | GO:0005871: kinesin complex | 8.74E-03 |
| 26 | GO:0019898: extrinsic component of membrane | 1.08E-02 |
| 27 | GO:0010319: stromule | 1.35E-02 |
| 28 | GO:0009295: nucleoid | 1.35E-02 |
| 29 | GO:0016021: integral component of membrane | 1.64E-02 |
| 30 | GO:0031969: chloroplast membrane | 1.74E-02 |
| 31 | GO:0019005: SCF ubiquitin ligase complex | 1.77E-02 |
| 32 | GO:0000502: proteasome complex | 3.09E-02 |
| 33 | GO:0005887: integral component of plasma membrane | 3.48E-02 |
| 34 | GO:0048046: apoplast | 4.18E-02 |
| 35 | GO:0005739: mitochondrion | 4.42E-02 |