co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G34260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045792: negative regulation of cell size	0.00E+00
2	GO:0090069: regulation of ribosome biogenesis	0.00E+00
3	GO:0042430: indole-containing compound metabolic process	0.00E+00
4	GO:0072321: chaperone-mediated protein transport	0.00E+00
5	GO:0071433: cell wall repair	0.00E+00
6	GO:0034976: response to endoplasmic reticulum stress	1.76E-09
7	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	7.51E-07
8	GO:0006457: protein folding	1.91E-06
9	GO:0045039: protein import into mitochondrial inner membrane	2.83E-06
10	GO:0045454: cell redox homeostasis	1.02E-05
11	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.22E-04
12	GO:0006430: lysyl-tRNA aminoacylation	1.22E-04
13	GO:2000232: regulation of rRNA processing	1.22E-04
14	GO:0010162: seed dormancy process	1.71E-04
15	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	2.82E-04
16	GO:1902000: homogentisate catabolic process	2.82E-04
17	GO:0042742: defense response to bacterium	3.97E-04
18	GO:0006487: protein N-linked glycosylation	4.18E-04
19	GO:0000027: ribosomal large subunit assembly	4.18E-04
20	GO:0009944: polarity specification of adaxial/abaxial axis	4.18E-04
21	GO:0009072: aromatic amino acid family metabolic process	4.65E-04
22	GO:0048281: inflorescence morphogenesis	4.65E-04
23	GO:1902626: assembly of large subunit precursor of preribosome	4.65E-04
24	GO:1900140: regulation of seedling development	4.65E-04
25	GO:0072661: protein targeting to plasma membrane	4.65E-04
26	GO:0009294: DNA mediated transformation	6.02E-04
27	GO:0007276: gamete generation	6.66E-04
28	GO:0000187: activation of MAPK activity	6.66E-04
29	GO:0010197: polar nucleus fusion	8.17E-04
30	GO:0060548: negative regulation of cell death	8.84E-04
31	GO:0051205: protein insertion into membrane	8.84E-04
32	GO:0010188: response to microbial phytotoxin	8.84E-04
33	GO:0000302: response to reactive oxygen species	9.99E-04
34	GO:0006461: protein complex assembly	1.12E-03
35	GO:0009697: salicylic acid biosynthetic process	1.12E-03
36	GO:0031365: N-terminal protein amino acid modification	1.12E-03
37	GO:0009567: double fertilization forming a zygote and endosperm	1.20E-03
38	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.37E-03
39	GO:0000741: karyogamy	1.37E-03
40	GO:0060918: auxin transport	1.37E-03
41	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.64E-03
42	GO:0022900: electron transport chain	2.54E-03
43	GO:0007338: single fertilization	2.87E-03
44	GO:0010205: photoinhibition	3.21E-03
45	GO:0043067: regulation of programmed cell death	3.21E-03
46	GO:0016573: histone acetylation	3.21E-03
47	GO:0010200: response to chitin	3.47E-03
48	GO:0043069: negative regulation of programmed cell death	3.57E-03
49	GO:0046686: response to cadmium ion	3.71E-03
50	GO:0016485: protein processing	3.94E-03
51	GO:0006364: rRNA processing	4.02E-03
52	GO:0015706: nitrate transport	4.32E-03
53	GO:0010075: regulation of meristem growth	4.71E-03
54	GO:0006626: protein targeting to mitochondrion	4.71E-03
55	GO:0009934: regulation of meristem structural organization	5.12E-03
56	GO:0048467: gynoecium development	5.12E-03
57	GO:0002237: response to molecule of bacterial origin	5.12E-03
58	GO:0009553: embryo sac development	5.54E-03
59	GO:0010167: response to nitrate	5.54E-03
60	GO:0030150: protein import into mitochondrial matrix	6.42E-03
61	GO:0051302: regulation of cell division	6.87E-03
62	GO:0015992: proton transport	7.34E-03
63	GO:0009814: defense response, incompatible interaction	7.81E-03
64	GO:0030433: ubiquitin-dependent ERAD pathway	7.81E-03
65	GO:0031348: negative regulation of defense response	7.81E-03
66	GO:0006468: protein phosphorylation	8.04E-03
67	GO:0009306: protein secretion	8.80E-03
68	GO:0042147: retrograde transport, endosome to Golgi	9.31E-03
69	GO:0010051: xylem and phloem pattern formation	9.83E-03
70	GO:0006662: glycerol ether metabolic process	1.04E-02
71	GO:0048868: pollen tube development	1.04E-02
72	GO:0009409: response to cold	1.11E-02
73	GO:0007166: cell surface receptor signaling pathway	1.13E-02
74	GO:0006891: intra-Golgi vesicle-mediated transport	1.20E-02
75	GO:0009651: response to salt stress	1.40E-02
76	GO:0009615: response to virus	1.56E-02
77	GO:0042128: nitrate assimilation	1.69E-02
78	GO:0006906: vesicle fusion	1.69E-02
79	GO:0008219: cell death	1.88E-02
80	GO:0009407: toxin catabolic process	2.02E-02
81	GO:0009631: cold acclimation	2.09E-02
82	GO:0010043: response to zinc ion	2.09E-02
83	GO:0045087: innate immune response	2.23E-02
84	GO:0034599: cellular response to oxidative stress	2.30E-02
85	GO:0006886: intracellular protein transport	2.35E-02
86	GO:0006839: mitochondrial transport	2.44E-02
87	GO:0006887: exocytosis	2.52E-02
88	GO:0032259: methylation	2.69E-02
89	GO:0009751: response to salicylic acid	2.77E-02
90	GO:0009644: response to high light intensity	2.82E-02
91	GO:0008643: carbohydrate transport	2.82E-02
92	GO:0000154: rRNA modification	2.90E-02
93	GO:0009965: leaf morphogenesis	2.90E-02
94	GO:0006412: translation	2.96E-02
95	GO:0006855: drug transmembrane transport	2.98E-02
96	GO:0031347: regulation of defense response	3.06E-02
97	GO:0000165: MAPK cascade	3.06E-02
98	GO:0009846: pollen germination	3.14E-02
99	GO:0006952: defense response	3.28E-02
100	GO:0006417: regulation of translation	3.55E-02
101	GO:0009909: regulation of flower development	3.55E-02
102	GO:0050832: defense response to fungus	3.56E-02
103	GO:0015031: protein transport	3.70E-02
104	GO:0006508: proteolysis	3.74E-02
105	GO:0048316: seed development	3.80E-02
106	GO:0016569: covalent chromatin modification	4.06E-02
107	GO:0009624: response to nematode	4.24E-02
108	GO:0009742: brassinosteroid mediated signaling pathway	4.42E-02
109	GO:0009735: response to cytokinin	4.53E-02
110	GO:0009555: pollen development	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
2	GO:0004164: diphthine synthase activity	0.00E+00
3	GO:0050220: prostaglandin-E synthase activity	0.00E+00
4	GO:0003756: protein disulfide isomerase activity	6.81E-07
5	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	2.06E-05
6	GO:0030515: snoRNA binding	5.92E-05
7	GO:0042134: rRNA primary transcript binding	1.22E-04
8	GO:0004824: lysine-tRNA ligase activity	1.22E-04
9	GO:0043021: ribonucleoprotein complex binding	2.82E-04
10	GO:0035241: protein-arginine omega-N monomethyltransferase activity	2.82E-04
11	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	2.82E-04
12	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	2.82E-04
13	GO:0004407: histone deacetylase activity	4.18E-04
14	GO:0052692: raffinose alpha-galactosidase activity	4.65E-04
15	GO:0008469: histone-arginine N-methyltransferase activity	4.65E-04
16	GO:0004557: alpha-galactosidase activity	4.65E-04
17	GO:0009678: hydrogen-translocating pyrophosphatase activity	6.66E-04
18	GO:0000339: RNA cap binding	6.66E-04
19	GO:0051082: unfolded protein binding	7.42E-04
20	GO:0004576: oligosaccharyl transferase activity	8.84E-04
21	GO:0003723: RNA binding	9.86E-04
22	GO:0008565: protein transporter activity	1.22E-03
23	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.84E-03
24	GO:0008235: metalloexopeptidase activity	1.92E-03
25	GO:0004427: inorganic diphosphatase activity	1.92E-03
26	GO:0004708: MAP kinase kinase activity	2.22E-03
27	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.22E-03
28	GO:0003746: translation elongation factor activity	2.33E-03
29	GO:0008168: methyltransferase activity	2.41E-03
30	GO:0015112: nitrate transmembrane transporter activity	3.21E-03
31	GO:0001055: RNA polymerase II activity	3.21E-03
32	GO:0001054: RNA polymerase I activity	3.94E-03
33	GO:0004177: aminopeptidase activity	3.94E-03
34	GO:0001056: RNA polymerase III activity	4.32E-03
35	GO:0015114: phosphate ion transmembrane transporter activity	4.71E-03
36	GO:0004190: aspartic-type endopeptidase activity	5.54E-03
37	GO:0015035: protein disulfide oxidoreductase activity	5.87E-03
38	GO:0005524: ATP binding	6.25E-03
39	GO:0033612: receptor serine/threonine kinase binding	7.34E-03
40	GO:0008514: organic anion transmembrane transporter activity	8.80E-03
41	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	9.19E-03
42	GO:0047134: protein-disulfide reductase activity	9.31E-03
43	GO:0003713: transcription coactivator activity	1.04E-02
44	GO:0004791: thioredoxin-disulfide reductase activity	1.09E-02
45	GO:0016853: isomerase activity	1.09E-02
46	GO:0004672: protein kinase activity	1.25E-02
47	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.32E-02
48	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.44E-02
49	GO:0004721: phosphoprotein phosphatase activity	1.75E-02
50	GO:0015238: drug transmembrane transporter activity	1.95E-02
51	GO:0003735: structural constituent of ribosome	1.98E-02
52	GO:0004222: metalloendopeptidase activity	2.02E-02
53	GO:0050897: cobalt ion binding	2.09E-02
54	GO:0000149: SNARE binding	2.37E-02
55	GO:0004364: glutathione transferase activity	2.59E-02
56	GO:0005484: SNAP receptor activity	2.67E-02
57	GO:0004674: protein serine/threonine kinase activity	2.69E-02
58	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.30E-02
59	GO:0016298: lipase activity	3.38E-02
60	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.98E-02
61	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.98E-02
62	GO:0016887: ATPase activity	4.33E-02
63	GO:0008026: ATP-dependent helicase activity	4.42E-02
64	GO:0016758: transferase activity, transferring hexosyl groups	4.88E-02
65	GO:0000166: nucleotide binding	4.95E-02
66	GO:0019843: rRNA binding	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0034457: Mpp10 complex	0.00E+00
4	GO:0005783: endoplasmic reticulum	5.28E-11
5	GO:0005730: nucleolus	5.69E-10
6	GO:0005788: endoplasmic reticulum lumen	1.92E-09
7	GO:0005774: vacuolar membrane	3.52E-07
8	GO:0070545: PeBoW complex	7.51E-07
9	GO:0008250: oligosaccharyltransferase complex	2.06E-05
10	GO:0032040: small-subunit processome	2.32E-04
11	GO:0005886: plasma membrane	2.59E-04
12	GO:0035267: NuA4 histone acetyltransferase complex	2.82E-04
13	GO:0030660: Golgi-associated vesicle membrane	8.84E-04
14	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	8.84E-04
15	GO:0005743: mitochondrial inner membrane	9.08E-04
16	GO:0005794: Golgi apparatus	1.26E-03
17	GO:0030904: retromer complex	1.37E-03
18	GO:0031428: box C/D snoRNP complex	1.37E-03
19	GO:0009506: plasmodesma	1.42E-03
20	GO:0016363: nuclear matrix	1.64E-03
21	GO:0030687: preribosome, large subunit precursor	1.92E-03
22	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.22E-03
23	GO:0009505: plant-type cell wall	2.53E-03
24	GO:0000326: protein storage vacuole	2.54E-03
25	GO:0010494: cytoplasmic stress granule	2.87E-03
26	GO:0005736: DNA-directed RNA polymerase I complex	2.87E-03
27	GO:0031901: early endosome membrane	2.87E-03
28	GO:0015030: Cajal body	3.21E-03
29	GO:0005666: DNA-directed RNA polymerase III complex	3.21E-03
30	GO:0000418: DNA-directed RNA polymerase IV complex	3.57E-03
31	GO:0005789: endoplasmic reticulum membrane	3.58E-03
32	GO:0005765: lysosomal membrane	3.94E-03
33	GO:0005665: DNA-directed RNA polymerase II, core complex	4.32E-03
34	GO:0031012: extracellular matrix	4.71E-03
35	GO:0019013: viral nucleocapsid	4.71E-03
36	GO:0005795: Golgi stack	5.54E-03
37	GO:0005768: endosome	5.98E-03
38	GO:0005618: cell wall	6.06E-03
39	GO:0005758: mitochondrial intermembrane space	6.42E-03
40	GO:0005739: mitochondrion	6.65E-03
41	GO:0016021: integral component of membrane	8.72E-03
42	GO:0005744: mitochondrial inner membrane presequence translocase complex	8.80E-03
43	GO:0005773: vacuole	1.07E-02
44	GO:0009504: cell plate	1.15E-02
45	GO:0016592: mediator complex	1.26E-02
46	GO:0016020: membrane	1.35E-02
47	GO:0000932: P-body	1.56E-02
48	GO:0022625: cytosolic large ribosomal subunit	2.00E-02
49	GO:0005802: trans-Golgi network	2.05E-02
50	GO:0005622: intracellular	2.33E-02
51	GO:0031201: SNARE complex	2.52E-02
52	GO:0031902: late endosome membrane	2.52E-02
53	GO:0009507: chloroplast	2.81E-02
54	GO:0005840: ribosome	2.91E-02
55	GO:0005747: mitochondrial respiratory chain complex I	3.80E-02
56	GO:0005732: small nucleolar ribonucleoprotein complex	4.51E-02
57	GO:0005654: nucleoplasm	4.88E-02