Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G33450

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:0006223: uracil salvage0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0006642: triglyceride mobilization0.00E+00
8GO:0006399: tRNA metabolic process0.00E+00
9GO:0006412: translation2.06E-18
10GO:0032544: plastid translation5.65E-12
11GO:0042254: ribosome biogenesis1.22E-11
12GO:0009735: response to cytokinin3.26E-11
13GO:0015979: photosynthesis1.45E-09
14GO:0015995: chlorophyll biosynthetic process7.45E-05
15GO:0010236: plastoquinone biosynthetic process8.98E-05
16GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.30E-04
17GO:0009772: photosynthetic electron transport in photosystem II2.33E-04
18GO:0045454: cell redox homeostasis2.46E-04
19GO:0000413: protein peptidyl-prolyl isomerization2.55E-04
20GO:0071588: hydrogen peroxide mediated signaling pathway2.94E-04
21GO:0010729: positive regulation of hydrogen peroxide biosynthetic process2.94E-04
22GO:0060627: regulation of vesicle-mediated transport2.94E-04
23GO:0043489: RNA stabilization2.94E-04
24GO:1904966: positive regulation of vitamin E biosynthetic process2.94E-04
25GO:0010442: guard cell morphogenesis2.94E-04
26GO:0046166: glyceraldehyde-3-phosphate biosynthetic process2.94E-04
27GO:1904964: positive regulation of phytol biosynthetic process2.94E-04
28GO:0042759: long-chain fatty acid biosynthetic process2.94E-04
29GO:0042371: vitamin K biosynthetic process2.94E-04
30GO:0006779: porphyrin-containing compound biosynthetic process5.16E-04
31GO:0009658: chloroplast organization5.72E-04
32GO:0006782: protoporphyrinogen IX biosynthetic process6.02E-04
33GO:0010027: thylakoid membrane organization6.04E-04
34GO:0052541: plant-type cell wall cellulose metabolic process6.45E-04
35GO:0046741: transport of virus in host, tissue to tissue6.45E-04
36GO:0006695: cholesterol biosynthetic process6.45E-04
37GO:1902326: positive regulation of chlorophyll biosynthetic process6.45E-04
38GO:0006729: tetrahydrobiopterin biosynthetic process6.45E-04
39GO:0006568: tryptophan metabolic process6.45E-04
40GO:0009773: photosynthetic electron transport in photosystem I6.94E-04
41GO:0010207: photosystem II assembly1.01E-03
42GO:0019253: reductive pentose-phosphate cycle1.01E-03
43GO:0090391: granum assembly1.04E-03
44GO:0019563: glycerol catabolic process1.04E-03
45GO:2001295: malonyl-CoA biosynthetic process1.04E-03
46GO:0032504: multicellular organism reproduction1.04E-03
47GO:0051085: chaperone mediated protein folding requiring cofactor1.50E-03
48GO:0006241: CTP biosynthetic process1.50E-03
49GO:0019048: modulation by virus of host morphology or physiology1.50E-03
50GO:0042742: defense response to bacterium1.50E-03
51GO:0010731: protein glutathionylation1.50E-03
52GO:0006424: glutamyl-tRNA aminoacylation1.50E-03
53GO:0006165: nucleoside diphosphate phosphorylation1.50E-03
54GO:1901332: negative regulation of lateral root development1.50E-03
55GO:0006228: UTP biosynthetic process1.50E-03
56GO:0031048: chromatin silencing by small RNA1.50E-03
57GO:0010088: phloem development1.50E-03
58GO:0006986: response to unfolded protein1.50E-03
59GO:0055070: copper ion homeostasis1.50E-03
60GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.50E-03
61GO:2001141: regulation of RNA biosynthetic process1.50E-03
62GO:0009411: response to UV2.00E-03
63GO:0006183: GTP biosynthetic process2.01E-03
64GO:2000122: negative regulation of stomatal complex development2.01E-03
65GO:0000919: cell plate assembly2.01E-03
66GO:0051567: histone H3-K9 methylation2.01E-03
67GO:0044206: UMP salvage2.01E-03
68GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.01E-03
69GO:0010037: response to carbon dioxide2.01E-03
70GO:0006808: regulation of nitrogen utilization2.01E-03
71GO:0015976: carbon utilization2.01E-03
72GO:0042335: cuticle development2.54E-03
73GO:0048359: mucilage metabolic process involved in seed coat development2.56E-03
74GO:0032543: mitochondrial translation2.56E-03
75GO:0043097: pyrimidine nucleoside salvage2.56E-03
76GO:0006096: glycolytic process2.81E-03
77GO:0009409: response to cold2.92E-03
78GO:0006206: pyrimidine nucleobase metabolic process3.16E-03
79GO:0032973: amino acid export3.16E-03
80GO:0016458: gene silencing3.16E-03
81GO:0006014: D-ribose metabolic process3.16E-03
82GO:0042549: photosystem II stabilization3.16E-03
83GO:0009955: adaxial/abaxial pattern specification3.81E-03
84GO:0042372: phylloquinone biosynthetic process3.81E-03
85GO:0017148: negative regulation of translation3.81E-03
86GO:0006694: steroid biosynthetic process3.81E-03
87GO:1901259: chloroplast rRNA processing3.81E-03
88GO:0010189: vitamin E biosynthetic process3.81E-03
89GO:0009854: oxidative photosynthetic carbon pathway3.81E-03
90GO:0010019: chloroplast-nucleus signaling pathway3.81E-03
91GO:0010555: response to mannitol3.81E-03
92GO:0043090: amino acid import4.49E-03
93GO:0010196: nonphotochemical quenching4.49E-03
94GO:0071669: plant-type cell wall organization or biogenesis4.49E-03
95GO:0051607: defense response to virus4.61E-03
96GO:0048564: photosystem I assembly5.21E-03
97GO:0008610: lipid biosynthetic process5.21E-03
98GO:0009642: response to light intensity5.21E-03
99GO:0006605: protein targeting5.21E-03
100GO:0071482: cellular response to light stimulus5.98E-03
101GO:0009657: plastid organization5.98E-03
102GO:0009808: lignin metabolic process5.98E-03
103GO:0006633: fatty acid biosynthetic process6.34E-03
104GO:0018298: protein-chromophore linkage6.37E-03
105GO:0016042: lipid catabolic process6.52E-03
106GO:0045337: farnesyl diphosphate biosynthetic process6.77E-03
107GO:0080144: amino acid homeostasis6.77E-03
108GO:0033384: geranyl diphosphate biosynthetic process6.77E-03
109GO:0015780: nucleotide-sugar transport6.77E-03
110GO:0006457: protein folding7.11E-03
111GO:0009631: cold acclimation7.37E-03
112GO:0009637: response to blue light8.08E-03
113GO:0034599: cellular response to oxidative stress8.45E-03
114GO:0030422: production of siRNA involved in RNA interference8.48E-03
115GO:0006949: syncytium formation8.48E-03
116GO:0009793: embryo development ending in seed dormancy9.28E-03
117GO:0019684: photosynthesis, light reaction9.38E-03
118GO:0009089: lysine biosynthetic process via diaminopimelate9.38E-03
119GO:0043085: positive regulation of catalytic activity9.38E-03
120GO:0006352: DNA-templated transcription, initiation9.38E-03
121GO:0018119: peptidyl-cysteine S-nitrosylation9.38E-03
122GO:0010114: response to red light1.04E-02
123GO:0042546: cell wall biogenesis1.09E-02
124GO:0006006: glucose metabolic process1.13E-02
125GO:0006094: gluconeogenesis1.13E-02
126GO:0010143: cutin biosynthetic process1.23E-02
127GO:0010020: chloroplast fission1.23E-02
128GO:0046688: response to copper ion1.33E-02
129GO:0010025: wax biosynthetic process1.44E-02
130GO:0006071: glycerol metabolic process1.44E-02
131GO:0006833: water transport1.44E-02
132GO:0019344: cysteine biosynthetic process1.55E-02
133GO:0009116: nucleoside metabolic process1.55E-02
134GO:0000027: ribosomal large subunit assembly1.55E-02
135GO:0008299: isoprenoid biosynthetic process1.66E-02
136GO:0010026: trichome differentiation1.66E-02
137GO:0009768: photosynthesis, light harvesting in photosystem I1.66E-02
138GO:0061077: chaperone-mediated protein folding1.78E-02
139GO:0006306: DNA methylation1.78E-02
140GO:0016114: terpenoid biosynthetic process1.78E-02
141GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.02E-02
142GO:0009306: protein secretion2.14E-02
143GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.27E-02
144GO:0006869: lipid transport2.31E-02
145GO:0000271: polysaccharide biosynthetic process2.40E-02
146GO:0080022: primary root development2.40E-02
147GO:0034220: ion transmembrane transport2.40E-02
148GO:0006662: glycerol ether metabolic process2.53E-02
149GO:0006342: chromatin silencing2.53E-02
150GO:0015986: ATP synthesis coupled proton transport2.66E-02
151GO:0007018: microtubule-based movement2.66E-02
152GO:0019252: starch biosynthetic process2.80E-02
153GO:0071554: cell wall organization or biogenesis2.94E-02
154GO:0000302: response to reactive oxygen species2.94E-02
155GO:0002229: defense response to oomycetes2.94E-02
156GO:0016132: brassinosteroid biosynthetic process2.94E-02
157GO:0010583: response to cyclopentenone3.08E-02
158GO:0032502: developmental process3.08E-02
159GO:0006413: translational initiation3.24E-02
160GO:0009828: plant-type cell wall loosening3.37E-02
161GO:0009451: RNA modification3.56E-02
162GO:0016126: sterol biosynthetic process3.82E-02
163GO:0009615: response to virus3.82E-02
164GO:0009816: defense response to bacterium, incompatible interaction3.97E-02
165GO:0009627: systemic acquired resistance4.13E-02
166GO:0010411: xyloglucan metabolic process4.29E-02
167GO:0071555: cell wall organization4.57E-02
168GO:0009817: defense response to fungus, incompatible interaction4.61E-02
169GO:0030244: cellulose biosynthetic process4.61E-02
170GO:0009832: plant-type cell wall biogenesis4.77E-02
171GO:0010311: lateral root formation4.77E-02
172GO:0009834: plant-type secondary cell wall biogenesis4.94E-02
173GO:0009407: toxin catabolic process4.94E-02
174GO:0010218: response to far red light4.94E-02
RankGO TermAdjusted P value
1GO:0050614: delta24-sterol reductase activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
4GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
5GO:0008887: glycerate kinase activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
8GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
9GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
10GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
11GO:0019843: rRNA binding2.00E-23
12GO:0003735: structural constituent of ribosome1.19E-21
13GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.49E-09
14GO:0051920: peroxiredoxin activity3.09E-06
15GO:0005528: FK506 binding3.73E-06
16GO:0016209: antioxidant activity7.53E-06
17GO:0004659: prenyltransferase activity5.68E-05
18GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.94E-04
19GO:0004425: indole-3-glycerol-phosphate synthase activity2.94E-04
20GO:0004807: triose-phosphate isomerase activity2.94E-04
21GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.94E-04
22GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.94E-04
23GO:0004163: diphosphomevalonate decarboxylase activity2.94E-04
24GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.94E-04
25GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity2.94E-04
26GO:0016788: hydrolase activity, acting on ester bonds5.92E-04
27GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity6.45E-04
28GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.45E-04
29GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.45E-04
30GO:0052689: carboxylic ester hydrolase activity9.96E-04
31GO:0008266: poly(U) RNA binding1.01E-03
32GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.04E-03
33GO:0017150: tRNA dihydrouridine synthase activity1.04E-03
34GO:0050734: hydroxycinnamoyltransferase activity1.04E-03
35GO:0004148: dihydrolipoyl dehydrogenase activity1.04E-03
36GO:0004075: biotin carboxylase activity1.04E-03
37GO:0045174: glutathione dehydrogenase (ascorbate) activity1.04E-03
38GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.04E-03
39GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.04E-03
40GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.50E-03
41GO:0035197: siRNA binding1.50E-03
42GO:0016851: magnesium chelatase activity1.50E-03
43GO:0004550: nucleoside diphosphate kinase activity1.50E-03
44GO:0008097: 5S rRNA binding1.50E-03
45GO:0043621: protein self-association1.72E-03
46GO:0016836: hydro-lyase activity2.01E-03
47GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.01E-03
48GO:0016987: sigma factor activity2.01E-03
49GO:0046527: glucosyltransferase activity2.01E-03
50GO:0052793: pectin acetylesterase activity2.01E-03
51GO:0043495: protein anchor2.01E-03
52GO:0001053: plastid sigma factor activity2.01E-03
53GO:0004845: uracil phosphoribosyltransferase activity2.01E-03
54GO:0016773: phosphotransferase activity, alcohol group as acceptor2.56E-03
55GO:0004040: amidase activity2.56E-03
56GO:0003989: acetyl-CoA carboxylase activity2.56E-03
57GO:0004130: cytochrome-c peroxidase activity3.16E-03
58GO:0016688: L-ascorbate peroxidase activity3.16E-03
59GO:0015631: tubulin binding3.81E-03
60GO:0051753: mannan synthase activity3.81E-03
61GO:0004849: uridine kinase activity3.81E-03
62GO:0004747: ribokinase activity3.81E-03
63GO:0016831: carboxy-lyase activity4.49E-03
64GO:0019899: enzyme binding4.49E-03
65GO:0016168: chlorophyll binding5.16E-03
66GO:0052747: sinapyl alcohol dehydrogenase activity5.21E-03
67GO:0004033: aldo-keto reductase (NADP) activity5.21E-03
68GO:0008865: fructokinase activity5.21E-03
69GO:0004337: geranyltranstransferase activity6.77E-03
70GO:0008889: glycerophosphodiester phosphodiesterase activity6.77E-03
71GO:0047617: acyl-CoA hydrolase activity7.60E-03
72GO:0008047: enzyme activator activity8.48E-03
73GO:0004161: dimethylallyltranstransferase activity9.38E-03
74GO:0042802: identical protein binding9.71E-03
75GO:0004364: glutathione transferase activity1.00E-02
76GO:0004521: endoribonuclease activity1.03E-02
77GO:0045551: cinnamyl-alcohol dehydrogenase activity1.03E-02
78GO:0004089: carbonate dehydratase activity1.13E-02
79GO:0004601: peroxidase activity1.25E-02
80GO:0005509: calcium ion binding1.34E-02
81GO:0031409: pigment binding1.44E-02
82GO:0003777: microtubule motor activity1.56E-02
83GO:0051087: chaperone binding1.66E-02
84GO:0004176: ATP-dependent peptidase activity1.78E-02
85GO:0030599: pectinesterase activity1.89E-02
86GO:0016760: cellulose synthase (UDP-forming) activity2.02E-02
87GO:0022891: substrate-specific transmembrane transporter activity2.02E-02
88GO:0008514: organic anion transmembrane transporter activity2.14E-02
89GO:0047134: protein-disulfide reductase activity2.27E-02
90GO:0003723: RNA binding2.47E-02
91GO:0008080: N-acetyltransferase activity2.53E-02
92GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.53E-02
93GO:0004791: thioredoxin-disulfide reductase activity2.66E-02
94GO:0009055: electron carrier activity2.92E-02
95GO:0016762: xyloglucan:xyloglucosyl transferase activity2.94E-02
96GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.22E-02
97GO:0008483: transaminase activity3.51E-02
98GO:0016722: oxidoreductase activity, oxidizing metal ions3.51E-02
99GO:0008237: metallopeptidase activity3.51E-02
100GO:0008017: microtubule binding3.64E-02
101GO:0016413: O-acetyltransferase activity3.66E-02
102GO:0015250: water channel activity3.82E-02
103GO:0008289: lipid binding4.03E-02
104GO:0003743: translation initiation factor activity4.05E-02
105GO:0016798: hydrolase activity, acting on glycosyl bonds4.29E-02
106GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.44E-02
107GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.61E-02
108GO:0004222: metalloendopeptidase activity4.94E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009507: chloroplast3.51E-65
4GO:0009570: chloroplast stroma2.51E-64
5GO:0009941: chloroplast envelope1.13E-45
6GO:0009579: thylakoid1.11E-34
7GO:0009535: chloroplast thylakoid membrane8.37E-26
8GO:0005840: ribosome1.12E-22
9GO:0031977: thylakoid lumen9.04E-22
10GO:0009543: chloroplast thylakoid lumen1.03E-21
11GO:0009534: chloroplast thylakoid3.19E-20
12GO:0009654: photosystem II oxygen evolving complex9.98E-08
13GO:0019898: extrinsic component of membrane8.11E-07
14GO:0000311: plastid large ribosomal subunit9.59E-07
15GO:0030095: chloroplast photosystem II1.74E-06
16GO:0015934: large ribosomal subunit7.84E-06
17GO:0010319: stromule4.35E-05
18GO:0048046: apoplast4.70E-05
19GO:0009515: granal stacked thylakoid2.94E-04
20GO:0009547: plastid ribosome2.94E-04
21GO:0046658: anchored component of plasma membrane4.32E-04
22GO:0016020: membrane4.48E-04
23GO:0009536: plastid7.35E-04
24GO:0010287: plastoglobule7.93E-04
25GO:0010007: magnesium chelatase complex1.04E-03
26GO:0022626: cytosolic ribosome1.11E-03
27GO:0005719: nuclear euchromatin1.50E-03
28GO:0042651: thylakoid membrane1.53E-03
29GO:0015935: small ribosomal subunit1.68E-03
30GO:0009505: plant-type cell wall2.46E-03
31GO:0055035: plastid thylakoid membrane2.56E-03
32GO:0031225: anchored component of membrane2.93E-03
33GO:0009523: photosystem II3.16E-03
34GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.16E-03
35GO:0005874: microtubule3.58E-03
36GO:0009533: chloroplast stromal thylakoid4.49E-03
37GO:0005618: cell wall4.65E-03
38GO:0030529: intracellular ribonucleoprotein complex4.88E-03
39GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.77E-03
40GO:0005763: mitochondrial small ribosomal subunit6.77E-03
41GO:0015030: Cajal body7.60E-03
42GO:0000312: plastid small ribosomal subunit1.23E-02
43GO:0030076: light-harvesting complex1.33E-02
44GO:0031969: chloroplast membrane1.64E-02
45GO:0009532: plastid stroma1.78E-02
46GO:0009706: chloroplast inner membrane2.01E-02
47GO:0005871: kinesin complex2.27E-02
48GO:0009522: photosystem I2.66E-02
49GO:0005778: peroxisomal membrane3.51E-02
<
Gene type



Gene DE type