Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G32480

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
2GO:0042820: vitamin B6 catabolic process0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
8GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
9GO:0009773: photosynthetic electron transport in photosystem I1.04E-08
10GO:0015979: photosynthesis3.19E-08
11GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.59E-07
12GO:0009658: chloroplast organization1.31E-06
13GO:1902326: positive regulation of chlorophyll biosynthetic process4.35E-06
14GO:0030388: fructose 1,6-bisphosphate metabolic process4.35E-06
15GO:0010275: NAD(P)H dehydrogenase complex assembly4.35E-06
16GO:0006810: transport4.64E-06
17GO:0048564: photosystem I assembly8.51E-06
18GO:0009853: photorespiration1.18E-05
19GO:0071482: cellular response to light stimulus1.23E-05
20GO:0006000: fructose metabolic process1.55E-05
21GO:0006094: gluconeogenesis5.85E-05
22GO:0009767: photosynthetic electron transport chain5.85E-05
23GO:0006021: inositol biosynthetic process6.18E-05
24GO:0019464: glycine decarboxylation via glycine cleavage system6.18E-05
25GO:0006546: glycine catabolic process6.18E-05
26GO:0019253: reductive pentose-phosphate cycle7.08E-05
27GO:0018298: protein-chromophore linkage1.03E-04
28GO:0042549: photosystem II stabilization1.41E-04
29GO:0010190: cytochrome b6f complex assembly1.41E-04
30GO:0010196: nonphotochemical quenching2.51E-04
31GO:0009735: response to cytokinin2.99E-04
32GO:0046900: tetrahydrofolylpolyglutamate metabolic process3.09E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process3.09E-04
34GO:0006659: phosphatidylserine biosynthetic process3.09E-04
35GO:1904964: positive regulation of phytol biosynthetic process3.09E-04
36GO:0071277: cellular response to calcium ion3.09E-04
37GO:0033481: galacturonate biosynthetic process3.09E-04
38GO:0080093: regulation of photorespiration3.09E-04
39GO:0031998: regulation of fatty acid beta-oxidation3.09E-04
40GO:0000023: maltose metabolic process3.09E-04
41GO:0009443: pyridoxal 5'-phosphate salvage3.09E-04
42GO:0009704: de-etiolation3.17E-04
43GO:0009791: post-embryonic development3.77E-04
44GO:0009657: plastid organization3.89E-04
45GO:0006002: fructose 6-phosphate metabolic process3.89E-04
46GO:0010027: thylakoid membrane organization6.61E-04
47GO:0007154: cell communication6.76E-04
48GO:0034755: iron ion transmembrane transport6.76E-04
49GO:0097054: L-glutamate biosynthetic process6.76E-04
50GO:1904143: positive regulation of carotenoid biosynthetic process6.76E-04
51GO:0080183: response to photooxidative stress6.76E-04
52GO:0009629: response to gravity6.76E-04
53GO:0006352: DNA-templated transcription, initiation7.44E-04
54GO:0000272: polysaccharide catabolic process7.44E-04
55GO:0018119: peptidyl-cysteine S-nitrosylation7.44E-04
56GO:0005986: sucrose biosynthetic process9.61E-04
57GO:0010207: photosystem II assembly1.08E-03
58GO:0006518: peptide metabolic process1.10E-03
59GO:0051604: protein maturation1.10E-03
60GO:0045910: negative regulation of DNA recombination1.10E-03
61GO:0000913: preprophase band assembly1.10E-03
62GO:0031022: nuclear migration along microfilament1.10E-03
63GO:0090351: seedling development1.21E-03
64GO:0043572: plastid fission1.57E-03
65GO:0016556: mRNA modification1.57E-03
66GO:2001141: regulation of RNA biosynthetic process1.57E-03
67GO:0046836: glycolipid transport1.57E-03
68GO:0006020: inositol metabolic process1.57E-03
69GO:0006537: glutamate biosynthetic process1.57E-03
70GO:0010731: protein glutathionylation1.57E-03
71GO:0009768: photosynthesis, light harvesting in photosystem I1.64E-03
72GO:0061077: chaperone-mediated protein folding1.80E-03
73GO:0080092: regulation of pollen tube growth1.97E-03
74GO:0016226: iron-sulfur cluster assembly1.97E-03
75GO:0071483: cellular response to blue light2.11E-03
76GO:0009902: chloroplast relocation2.11E-03
77GO:0019676: ammonia assimilation cycle2.11E-03
78GO:0045727: positive regulation of translation2.11E-03
79GO:0015994: chlorophyll metabolic process2.11E-03
80GO:0006564: L-serine biosynthetic process2.69E-03
81GO:0009904: chloroplast accumulation movement2.69E-03
82GO:0006544: glycine metabolic process2.69E-03
83GO:0043097: pyrimidine nucleoside salvage2.69E-03
84GO:0006097: glyoxylate cycle2.69E-03
85GO:0006461: protein complex assembly2.69E-03
86GO:0016123: xanthophyll biosynthetic process2.69E-03
87GO:0080110: sporopollenin biosynthetic process2.69E-03
88GO:0009247: glycolipid biosynthetic process2.69E-03
89GO:0042631: cellular response to water deprivation2.73E-03
90GO:0009741: response to brassinosteroid2.94E-03
91GO:0055114: oxidation-reduction process3.19E-03
92GO:0006206: pyrimidine nucleobase metabolic process3.32E-03
93GO:0046855: inositol phosphate dephosphorylation3.32E-03
94GO:0006563: L-serine metabolic process3.32E-03
95GO:0010304: PSII associated light-harvesting complex II catabolic process3.32E-03
96GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.32E-03
97GO:0010358: leaf shaping3.32E-03
98GO:0006458: 'de novo' protein folding4.00E-03
99GO:0042026: protein refolding4.00E-03
100GO:0009903: chloroplast avoidance movement4.00E-03
101GO:1901259: chloroplast rRNA processing4.00E-03
102GO:0009854: oxidative photosynthetic carbon pathway4.00E-03
103GO:0080167: response to karrikin4.21E-03
104GO:0046686: response to cadmium ion4.64E-03
105GO:0009645: response to low light intensity stimulus4.72E-03
106GO:0050829: defense response to Gram-negative bacterium4.72E-03
107GO:0009416: response to light stimulus5.15E-03
108GO:0019375: galactolipid biosynthetic process5.48E-03
109GO:0016559: peroxisome fission5.48E-03
110GO:0032544: plastid translation6.28E-03
111GO:0017004: cytochrome complex assembly6.28E-03
112GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.28E-03
113GO:0090333: regulation of stomatal closure7.12E-03
114GO:0000373: Group II intron splicing7.12E-03
115GO:0000902: cell morphogenesis7.12E-03
116GO:0009821: alkaloid biosynthetic process7.12E-03
117GO:0010206: photosystem II repair7.12E-03
118GO:0006098: pentose-phosphate shunt7.12E-03
119GO:0006508: proteolysis7.73E-03
120GO:0007623: circadian rhythm7.85E-03
121GO:1900865: chloroplast RNA modification8.01E-03
122GO:0010205: photoinhibition8.01E-03
123GO:0035999: tetrahydrofolate interconversion8.01E-03
124GO:0006535: cysteine biosynthetic process from serine8.92E-03
125GO:0045036: protein targeting to chloroplast8.92E-03
126GO:0006298: mismatch repair8.92E-03
127GO:0006879: cellular iron ion homeostasis9.88E-03
128GO:0006415: translational termination9.88E-03
129GO:0019684: photosynthesis, light reaction9.88E-03
130GO:0009409: response to cold1.02E-02
131GO:0005983: starch catabolic process1.09E-02
132GO:0006790: sulfur compound metabolic process1.09E-02
133GO:0006108: malate metabolic process1.19E-02
134GO:0010020: chloroplast fission1.30E-02
135GO:0006541: glutamine metabolic process1.30E-02
136GO:0005985: sucrose metabolic process1.40E-02
137GO:0046854: phosphatidylinositol phosphorylation1.40E-02
138GO:0009225: nucleotide-sugar metabolic process1.40E-02
139GO:0007031: peroxisome organization1.40E-02
140GO:0042343: indole glucosinolate metabolic process1.40E-02
141GO:0019344: cysteine biosynthetic process1.63E-02
142GO:0042742: defense response to bacterium1.75E-02
143GO:0007017: microtubule-based process1.75E-02
144GO:0016575: histone deacetylation1.75E-02
145GO:0098542: defense response to other organism1.87E-02
146GO:0006730: one-carbon metabolic process2.00E-02
147GO:0010584: pollen exine formation2.25E-02
148GO:0016117: carotenoid biosynthetic process2.39E-02
149GO:0070417: cellular response to cold2.39E-02
150GO:0010268: brassinosteroid homeostasis2.66E-02
151GO:0006457: protein folding2.66E-02
152GO:0008360: regulation of cell shape2.66E-02
153GO:0006520: cellular amino acid metabolic process2.66E-02
154GO:0015986: ATP synthesis coupled proton transport2.80E-02
155GO:0007018: microtubule-based movement2.80E-02
156GO:0006814: sodium ion transport2.80E-02
157GO:0009646: response to absence of light2.80E-02
158GO:0009058: biosynthetic process2.86E-02
159GO:0019252: starch biosynthetic process2.95E-02
160GO:0008654: phospholipid biosynthetic process2.95E-02
161GO:0002229: defense response to oomycetes3.09E-02
162GO:0016132: brassinosteroid biosynthetic process3.09E-02
163GO:0080156: mitochondrial mRNA modification3.09E-02
164GO:0009753: response to jasmonic acid3.20E-02
165GO:0032502: developmental process3.24E-02
166GO:0007264: small GTPase mediated signal transduction3.24E-02
167GO:0016032: viral process3.24E-02
168GO:0010090: trichome morphogenesis3.39E-02
169GO:0030163: protein catabolic process3.39E-02
170GO:0016125: sterol metabolic process3.55E-02
171GO:0071805: potassium ion transmembrane transport3.70E-02
172GO:0010286: heat acclimation3.70E-02
173GO:0000910: cytokinesis3.86E-02
174GO:0001666: response to hypoxia4.02E-02
175GO:0009816: defense response to bacterium, incompatible interaction4.18E-02
176GO:0042128: nitrate assimilation4.35E-02
177GO:0009817: defense response to fungus, incompatible interaction4.85E-02
RankGO TermAdjusted P value
1GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
2GO:0043014: alpha-tubulin binding0.00E+00
3GO:0051721: protein phosphatase 2A binding0.00E+00
4GO:0008974: phosphoribulokinase activity0.00E+00
5GO:0042903: tubulin deacetylase activity0.00E+00
6GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
7GO:0004760: serine-pyruvate transaminase activity0.00E+00
8GO:0008465: glycerate dehydrogenase activity0.00E+00
9GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
10GO:0051738: xanthophyll binding0.00E+00
11GO:0050281: serine-glyoxylate transaminase activity0.00E+00
12GO:0005363: maltose transmembrane transporter activity0.00E+00
13GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
14GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
15GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.61E-07
16GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.35E-06
17GO:0004222: metalloendopeptidase activity8.31E-06
18GO:0004033: aldo-keto reductase (NADP) activity8.51E-06
19GO:0048038: quinone binding3.03E-05
20GO:0031072: heat shock protein binding5.85E-05
21GO:0001053: plastid sigma factor activity6.18E-05
22GO:0051861: glycolipid binding6.18E-05
23GO:0016987: sigma factor activity6.18E-05
24GO:0016168: chlorophyll binding6.97E-05
25GO:0004176: ATP-dependent peptidase activity1.56E-04
26GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.93E-04
27GO:0003867: 4-aminobutyrate transaminase activity3.09E-04
28GO:0008242: omega peptidase activity3.09E-04
29GO:0016041: glutamate synthase (ferredoxin) activity3.09E-04
30GO:0030941: chloroplast targeting sequence binding3.09E-04
31GO:0010012: steroid 22-alpha hydroxylase activity3.09E-04
32GO:0009496: plastoquinol--plastocyanin reductase activity3.09E-04
33GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.09E-04
34GO:0070006: metalloaminopeptidase activity3.09E-04
35GO:0008237: metallopeptidase activity5.71E-04
36GO:0008934: inositol monophosphate 1-phosphatase activity6.76E-04
37GO:0052833: inositol monophosphate 4-phosphatase activity6.76E-04
38GO:0034722: gamma-glutamyl-peptidase activity6.76E-04
39GO:0004512: inositol-3-phosphate synthase activity6.76E-04
40GO:0008967: phosphoglycolate phosphatase activity6.76E-04
41GO:0050017: L-3-cyanoalanine synthase activity6.76E-04
42GO:0010291: carotene beta-ring hydroxylase activity6.76E-04
43GO:0047746: chlorophyllase activity6.76E-04
44GO:0010297: heteropolysaccharide binding6.76E-04
45GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.76E-04
46GO:0004617: phosphoglycerate dehydrogenase activity6.76E-04
47GO:0004047: aminomethyltransferase activity6.76E-04
48GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity6.76E-04
49GO:0052832: inositol monophosphate 3-phosphatase activity6.76E-04
50GO:0051082: unfolded protein binding6.82E-04
51GO:0005089: Rho guanyl-nucleotide exchange factor activity7.44E-04
52GO:0008266: poly(U) RNA binding1.08E-03
53GO:0003913: DNA photolyase activity1.10E-03
54GO:0032947: protein complex scaffold1.10E-03
55GO:0004148: dihydrolipoyl dehydrogenase activity1.10E-03
56GO:0070402: NADPH binding1.10E-03
57GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.10E-03
58GO:0070330: aromatase activity1.10E-03
59GO:0016787: hydrolase activity1.16E-03
60GO:0031409: pigment binding1.34E-03
61GO:0051536: iron-sulfur cluster binding1.49E-03
62GO:0005528: FK506 binding1.49E-03
63GO:0048487: beta-tubulin binding1.57E-03
64GO:0016149: translation release factor activity, codon specific1.57E-03
65GO:0008508: bile acid:sodium symporter activity1.57E-03
66GO:0017089: glycolipid transporter activity1.57E-03
67GO:0004375: glycine dehydrogenase (decarboxylating) activity1.57E-03
68GO:0035250: UDP-galactosyltransferase activity1.57E-03
69GO:0015079: potassium ion transmembrane transporter activity1.64E-03
70GO:0050378: UDP-glucuronate 4-epimerase activity2.11E-03
71GO:0043495: protein anchor2.11E-03
72GO:0008453: alanine-glyoxylate transaminase activity2.11E-03
73GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.11E-03
74GO:0022891: substrate-specific transmembrane transporter activity2.15E-03
75GO:0018685: alkane 1-monooxygenase activity2.69E-03
76GO:0051538: 3 iron, 4 sulfur cluster binding2.69E-03
77GO:0008374: O-acyltransferase activity2.69E-03
78GO:0004372: glycine hydroxymethyltransferase activity2.69E-03
79GO:0050662: coenzyme binding3.16E-03
80GO:0102229: amylopectin maltohydrolase activity3.32E-03
81GO:0042578: phosphoric ester hydrolase activity3.32E-03
82GO:0016615: malate dehydrogenase activity3.32E-03
83GO:0030983: mismatched DNA binding3.32E-03
84GO:0080030: methyl indole-3-acetate esterase activity3.32E-03
85GO:0004332: fructose-bisphosphate aldolase activity3.32E-03
86GO:0016161: beta-amylase activity4.00E-03
87GO:0030060: L-malate dehydrogenase activity4.00E-03
88GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.00E-03
89GO:0004124: cysteine synthase activity4.00E-03
90GO:0004849: uridine kinase activity4.00E-03
91GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.00E-03
92GO:0009881: photoreceptor activity4.72E-03
93GO:0019899: enzyme binding4.72E-03
94GO:0019843: rRNA binding5.21E-03
95GO:0008135: translation factor activity, RNA binding6.28E-03
96GO:0003843: 1,3-beta-D-glucan synthase activity6.28E-03
97GO:0015078: hydrogen ion transmembrane transporter activity6.28E-03
98GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.28E-03
99GO:0003824: catalytic activity6.80E-03
100GO:0003747: translation release factor activity7.12E-03
101GO:0016844: strictosidine synthase activity8.01E-03
102GO:0005381: iron ion transmembrane transporter activity8.01E-03
103GO:0004519: endonuclease activity8.65E-03
104GO:0016491: oxidoreductase activity9.70E-03
105GO:0015386: potassium:proton antiporter activity9.88E-03
106GO:0004177: aminopeptidase activity9.88E-03
107GO:0044183: protein binding involved in protein folding9.88E-03
108GO:0047372: acylglycerol lipase activity9.88E-03
109GO:0051537: 2 iron, 2 sulfur cluster binding1.22E-02
110GO:0005198: structural molecule activity1.26E-02
111GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.31E-02
112GO:0051287: NAD binding1.36E-02
113GO:0016887: ATPase activity1.48E-02
114GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.52E-02
115GO:0005509: calcium ion binding1.52E-02
116GO:0004407: histone deacetylase activity1.63E-02
117GO:0003777: microtubule motor activity1.68E-02
118GO:0005506: iron ion binding1.70E-02
119GO:0043424: protein histidine kinase binding1.75E-02
120GO:0003756: protein disulfide isomerase activity2.25E-02
121GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.79E-02
122GO:0003924: GTPase activity2.93E-02
123GO:0030170: pyridoxal phosphate binding3.01E-02
124GO:0016759: cellulose synthase activity3.55E-02
125GO:0003684: damaged DNA binding3.55E-02
126GO:0008483: transaminase activity3.70E-02
127GO:0005525: GTP binding3.77E-02
128GO:0016597: amino acid binding3.86E-02
129GO:0046872: metal ion binding3.90E-02
130GO:0009931: calcium-dependent protein serine/threonine kinase activity4.35E-02
131GO:0004683: calmodulin-dependent protein kinase activity4.51E-02
132GO:0008236: serine-type peptidase activity4.68E-02
133GO:0042802: identical protein binding4.73E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0042579: microbody0.00E+00
4GO:0009571: proplastid stroma0.00E+00
5GO:0009507: chloroplast1.88E-62
6GO:0009535: chloroplast thylakoid membrane2.57E-38
7GO:0009941: chloroplast envelope1.88E-28
8GO:0009570: chloroplast stroma1.18E-21
9GO:0009534: chloroplast thylakoid2.65E-17
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.69E-16
11GO:0009579: thylakoid2.38E-11
12GO:0009543: chloroplast thylakoid lumen6.58E-08
13GO:0009654: photosystem II oxygen evolving complex1.21E-07
14GO:0030095: chloroplast photosystem II2.04E-06
15GO:0009523: photosystem II2.64E-05
16GO:0019898: extrinsic component of membrane2.64E-05
17GO:0010319: stromule5.01E-05
18GO:0048046: apoplast6.50E-05
19GO:0009706: chloroplast inner membrane9.69E-05
20GO:0010287: plastoglobule1.39E-04
21GO:0009782: photosystem I antenna complex3.09E-04
22GO:0016021: integral component of membrane5.86E-04
23GO:0000427: plastid-encoded plastid RNA polymerase complex6.76E-04
24GO:0031357: integral component of chloroplast inner membrane6.76E-04
25GO:0031969: chloroplast membrane9.49E-04
26GO:0030076: light-harvesting complex1.21E-03
27GO:0016020: membrane1.26E-03
28GO:0005759: mitochondrial matrix1.35E-03
29GO:0005960: glycine cleavage complex1.57E-03
30GO:0042651: thylakoid membrane1.64E-03
31GO:0009517: PSII associated light-harvesting complex II2.11E-03
32GO:0030286: dynein complex2.11E-03
33GO:0009526: plastid envelope2.11E-03
34GO:0055035: plastid thylakoid membrane2.69E-03
35GO:0009512: cytochrome b6f complex2.69E-03
36GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.32E-03
37GO:0031359: integral component of chloroplast outer membrane4.72E-03
38GO:0009533: chloroplast stromal thylakoid4.72E-03
39GO:0009539: photosystem II reaction center6.28E-03
40GO:0000148: 1,3-beta-D-glucan synthase complex6.28E-03
41GO:0005779: integral component of peroxisomal membrane6.28E-03
42GO:0005777: peroxisome6.56E-03
43GO:0009707: chloroplast outer membrane6.85E-03
44GO:0016324: apical plasma membrane8.92E-03
45GO:0005819: spindle9.50E-03
46GO:0009508: plastid chromosome1.19E-02
47GO:0005875: microtubule associated complex1.52E-02
48GO:0005871: kinesin complex2.39E-02
49GO:0009536: plastid2.47E-02
50GO:0005623: cell2.79E-02
51GO:0009522: photosystem I2.80E-02
52GO:0009524: phragmoplast2.86E-02
53GO:0009504: cell plate2.95E-02
54GO:0005694: chromosome3.24E-02
55GO:0032580: Golgi cisterna membrane3.55E-02
56GO:0009295: nucleoid3.70E-02
57GO:0005778: peroxisomal membrane3.70E-02
58GO:0030529: intracellular ribonucleoprotein complex4.02E-02
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Gene type



Gene DE type