co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G31170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046719: regulation by virus of viral protein levels in host cell	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0006642: triglyceride mobilization	0.00E+00
5	GO:0006223: uracil salvage	0.00E+00
6	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
7	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
8	GO:0042371: vitamin K biosynthetic process	0.00E+00
9	GO:0070125: mitochondrial translational elongation	0.00E+00
10	GO:0006412: translation	4.31E-07
11	GO:0032544: plastid translation	2.29E-06
12	GO:0009658: chloroplast organization	8.92E-06
13	GO:0042254: ribosome biogenesis	9.42E-06
14	GO:0010236: plastoquinone biosynthetic process	3.14E-05
15	GO:0042372: phylloquinone biosynthetic process	6.56E-05
16	GO:0000413: protein peptidyl-prolyl isomerization	7.02E-05
17	GO:0009735: response to cytokinin	1.50E-04
18	GO:0060627: regulation of vesicle-mediated transport	1.56E-04
19	GO:1904966: positive regulation of vitamin E biosynthetic process	1.56E-04
20	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	1.56E-04
21	GO:0010442: guard cell morphogenesis	1.56E-04
22	GO:1904964: positive regulation of phytol biosynthetic process	1.56E-04
23	GO:0006436: tryptophanyl-tRNA aminoacylation	1.56E-04
24	GO:1902458: positive regulation of stomatal opening	1.56E-04
25	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.56E-04
26	GO:0010027: thylakoid membrane organization	1.84E-04
27	GO:0045037: protein import into chloroplast stroma	3.29E-04
28	GO:0052541: plant-type cell wall cellulose metabolic process	3.55E-04
29	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.55E-04
30	GO:0060919: auxin influx	3.55E-04
31	GO:0071258: cellular response to gravity	3.55E-04
32	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.55E-04
33	GO:2000123: positive regulation of stomatal complex development	3.55E-04
34	GO:0010207: photosystem II assembly	4.23E-04
35	GO:0019563: glycerol catabolic process	5.82E-04
36	GO:2001295: malonyl-CoA biosynthetic process	5.82E-04
37	GO:0032504: multicellular organism reproduction	5.82E-04
38	GO:0006418: tRNA aminoacylation for protein translation	6.43E-04
39	GO:0051085: chaperone mediated protein folding requiring cofactor	8.33E-04
40	GO:0006241: CTP biosynthetic process	8.33E-04
41	GO:0051016: barbed-end actin filament capping	8.33E-04
42	GO:0006165: nucleoside diphosphate phosphorylation	8.33E-04
43	GO:0006228: UTP biosynthetic process	8.33E-04
44	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	8.33E-04
45	GO:0016117: carotenoid biosynthetic process	9.79E-04
46	GO:0009765: photosynthesis, light harvesting	1.10E-03
47	GO:0006183: GTP biosynthetic process	1.10E-03
48	GO:2000038: regulation of stomatal complex development	1.10E-03
49	GO:0044206: UMP salvage	1.10E-03
50	GO:0010375: stomatal complex patterning	1.40E-03
51	GO:0048359: mucilage metabolic process involved in seed coat development	1.40E-03
52	GO:0016120: carotene biosynthetic process	1.40E-03
53	GO:0043097: pyrimidine nucleoside salvage	1.40E-03
54	GO:0045038: protein import into chloroplast thylakoid membrane	1.40E-03
55	GO:0016123: xanthophyll biosynthetic process	1.40E-03
56	GO:0032502: developmental process	1.48E-03
57	GO:0006555: methionine metabolic process	1.72E-03
58	GO:0006206: pyrimidine nucleobase metabolic process	1.72E-03
59	GO:0042549: photosystem II stabilization	1.72E-03
60	GO:0006633: fatty acid biosynthetic process	2.00E-03
61	GO:0009955: adaxial/abaxial pattern specification	2.06E-03
62	GO:0042026: protein refolding	2.06E-03
63	GO:1901259: chloroplast rRNA processing	2.06E-03
64	GO:0010189: vitamin E biosynthetic process	2.06E-03
65	GO:0009854: oxidative photosynthetic carbon pathway	2.06E-03
66	GO:0010555: response to mannitol	2.06E-03
67	GO:0009772: photosynthetic electron transport in photosystem II	2.42E-03
68	GO:0051693: actin filament capping	2.42E-03
69	GO:0006400: tRNA modification	2.42E-03
70	GO:0009610: response to symbiotic fungus	2.42E-03
71	GO:0006955: immune response	2.42E-03
72	GO:0048481: plant ovule development	2.59E-03
73	GO:0009642: response to light intensity	2.80E-03
74	GO:0042255: ribosome assembly	2.80E-03
75	GO:0006353: DNA-templated transcription, termination	2.80E-03
76	GO:2000070: regulation of response to water deprivation	2.80E-03
77	GO:0015996: chlorophyll catabolic process	3.21E-03
78	GO:0007186: G-protein coupled receptor signaling pathway	3.21E-03
79	GO:0006526: arginine biosynthetic process	3.21E-03
80	GO:0009932: cell tip growth	3.21E-03
81	GO:0010206: photosystem II repair	3.63E-03
82	GO:0000902: cell morphogenesis	3.63E-03
83	GO:0015780: nucleotide-sugar transport	3.63E-03
84	GO:0035999: tetrahydrofolate interconversion	4.06E-03
85	GO:0043069: negative regulation of programmed cell death	4.52E-03
86	GO:0048829: root cap development	4.52E-03
87	GO:0006949: syncytium formation	4.52E-03
88	GO:0009773: photosynthetic electron transport in photosystem I	4.99E-03
89	GO:0009073: aromatic amino acid family biosynthetic process	4.99E-03
90	GO:0043085: positive regulation of catalytic activity	4.99E-03
91	GO:0009409: response to cold	5.34E-03
92	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.38E-03
93	GO:0030036: actin cytoskeleton organization	5.98E-03
94	GO:0050826: response to freezing	5.98E-03
95	GO:0006094: gluconeogenesis	5.98E-03
96	GO:0006457: protein folding	6.03E-03
97	GO:0045454: cell redox homeostasis	6.48E-03
98	GO:0010020: chloroplast fission	6.50E-03
99	GO:0019253: reductive pentose-phosphate cycle	6.50E-03
100	GO:0007015: actin filament organization	6.50E-03
101	GO:0006096: glycolytic process	6.69E-03
102	GO:0006071: glycerol metabolic process	7.59E-03
103	GO:0009116: nucleoside metabolic process	8.16E-03
104	GO:0005992: trehalose biosynthetic process	8.16E-03
105	GO:0019344: cysteine biosynthetic process	8.16E-03
106	GO:0010026: trichome differentiation	8.74E-03
107	GO:0007017: microtubule-based process	8.74E-03
108	GO:0003333: amino acid transmembrane transport	9.34E-03
109	GO:0016998: cell wall macromolecule catabolic process	9.34E-03
110	GO:0006730: one-carbon metabolic process	9.96E-03
111	GO:0007005: mitochondrion organization	9.96E-03
112	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.06E-02
113	GO:0009411: response to UV	1.06E-02
114	GO:0009790: embryo development	1.18E-02
115	GO:0042742: defense response to bacterium	1.19E-02
116	GO:0042335: cuticle development	1.25E-02
117	GO:0080022: primary root development	1.25E-02
118	GO:0008033: tRNA processing	1.25E-02
119	GO:0006520: cellular amino acid metabolic process	1.32E-02
120	GO:0006662: glycerol ether metabolic process	1.32E-02
121	GO:0010182: sugar mediated signaling pathway	1.32E-02
122	GO:0009793: embryo development ending in seed dormancy	1.35E-02
123	GO:0007018: microtubule-based movement	1.39E-02
124	GO:0071554: cell wall organization or biogenesis	1.54E-02
125	GO:0002229: defense response to oomycetes	1.54E-02
126	GO:0055114: oxidation-reduction process	1.64E-02
127	GO:0008380: RNA splicing	1.67E-02
128	GO:0009828: plant-type cell wall loosening	1.76E-02
129	GO:0007267: cell-cell signaling	1.84E-02
130	GO:0006810: transport	2.11E-02
131	GO:0009627: systemic acquired resistance	2.16E-02
132	GO:0010411: xyloglucan metabolic process	2.24E-02
133	GO:0046686: response to cadmium ion	2.31E-02
134	GO:0016311: dephosphorylation	2.32E-02
135	GO:0055085: transmembrane transport	2.37E-02
136	GO:0018298: protein-chromophore linkage	2.41E-02
137	GO:0008219: cell death	2.41E-02
138	GO:0010311: lateral root formation	2.50E-02
139	GO:0006865: amino acid transport	2.76E-02
140	GO:0009853: photorespiration	2.85E-02
141	GO:0034599: cellular response to oxidative stress	2.94E-02
142	GO:0015979: photosynthesis	3.07E-02
143	GO:0006839: mitochondrial transport	3.13E-02
144	GO:0006631: fatty acid metabolic process	3.22E-02
145	GO:0042542: response to hydrogen peroxide	3.32E-02
146	GO:0009926: auxin polar transport	3.42E-02
147	GO:0051707: response to other organism	3.42E-02
148	GO:0042546: cell wall biogenesis	3.51E-02
149	GO:0008643: carbohydrate transport	3.61E-02
150	GO:0006629: lipid metabolic process	3.96E-02
151	GO:0042538: hyperosmotic salinity response	4.01E-02
152	GO:0009664: plant-type cell wall organization	4.01E-02
153	GO:0009585: red, far-red light phototransduction	4.22E-02

Rank	GO Term	Adjusted P value
1	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0008887: glycerate kinase activity	0.00E+00
5	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
6	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
7	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
8	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
9	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
10	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
11	GO:0019843: rRNA binding	2.14E-14
12	GO:0003735: structural constituent of ribosome	1.27E-08
13	GO:0051920: peroxiredoxin activity	6.56E-05
14	GO:0016209: antioxidant activity	1.13E-04
15	GO:0004560: alpha-L-fucosidase activity	1.56E-04
16	GO:0004807: triose-phosphate isomerase activity	1.56E-04
17	GO:0042834: peptidoglycan binding	1.56E-04
18	GO:0080132: fatty acid alpha-hydroxylase activity	1.56E-04
19	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	1.56E-04
20	GO:0004830: tryptophan-tRNA ligase activity	1.56E-04
21	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.56E-04
22	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	1.56E-04
23	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.56E-04
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.55E-04
25	GO:0002161: aminoacyl-tRNA editing activity	5.82E-04
26	GO:0004148: dihydrolipoyl dehydrogenase activity	5.82E-04
27	GO:0004075: biotin carboxylase activity	5.82E-04
28	GO:0030267: glyoxylate reductase (NADP) activity	5.82E-04
29	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.82E-04
30	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	5.82E-04
31	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	5.82E-04
32	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.13E-04
33	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	8.33E-04
34	GO:0004550: nucleoside diphosphate kinase activity	8.33E-04
35	GO:0008097: 5S rRNA binding	8.33E-04
36	GO:0003727: single-stranded RNA binding	9.07E-04
37	GO:0004812: aminoacyl-tRNA ligase activity	9.79E-04
38	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.10E-03
39	GO:0010328: auxin influx transmembrane transporter activity	1.10E-03
40	GO:0043495: protein anchor	1.10E-03
41	GO:0004659: prenyltransferase activity	1.10E-03
42	GO:0004845: uracil phosphoribosyltransferase activity	1.10E-03
43	GO:0003989: acetyl-CoA carboxylase activity	1.40E-03
44	GO:0016208: AMP binding	1.72E-03
45	GO:0008200: ion channel inhibitor activity	1.72E-03
46	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.78E-03
47	GO:0005200: structural constituent of cytoskeleton	1.78E-03
48	GO:0015631: tubulin binding	2.06E-03
49	GO:0004849: uridine kinase activity	2.06E-03
50	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.06E-03
51	GO:0019899: enzyme binding	2.42E-03
52	GO:0008236: serine-type peptidase activity	2.46E-03
53	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.63E-03
54	GO:0047617: acyl-CoA hydrolase activity	4.06E-03
55	GO:0008047: enzyme activator activity	4.52E-03
56	GO:0004805: trehalose-phosphatase activity	4.52E-03
57	GO:0044183: protein binding involved in protein folding	4.99E-03
58	GO:0000049: tRNA binding	5.48E-03
59	GO:0003777: microtubule motor activity	6.27E-03
60	GO:0003729: mRNA binding	6.30E-03
61	GO:0008266: poly(U) RNA binding	6.50E-03
62	GO:0005507: copper ion binding	6.97E-03
63	GO:0019706: protein-cysteine S-palmitoyltransferase activity	9.34E-03
64	GO:0030570: pectate lyase activity	1.06E-02
65	GO:0022891: substrate-specific transmembrane transporter activity	1.06E-02
66	GO:0008514: organic anion transmembrane transporter activity	1.12E-02
67	GO:0047134: protein-disulfide reductase activity	1.19E-02
68	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.32E-02
69	GO:0008080: N-acetyltransferase activity	1.32E-02
70	GO:0050662: coenzyme binding	1.39E-02
71	GO:0004791: thioredoxin-disulfide reductase activity	1.39E-02
72	GO:0016853: isomerase activity	1.39E-02
73	GO:0019901: protein kinase binding	1.46E-02
74	GO:0008017: microtubule binding	1.46E-02
75	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.54E-02
76	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.68E-02
77	GO:0051015: actin filament binding	1.68E-02
78	GO:0016413: O-acetyltransferase activity	1.92E-02
79	GO:0016168: chlorophyll binding	2.07E-02
80	GO:0005524: ATP binding	2.13E-02
81	GO:0004601: peroxidase activity	2.17E-02
82	GO:0016788: hydrolase activity, acting on ester bonds	2.21E-02
83	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.24E-02
84	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.32E-02
85	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.58E-02
86	GO:0003746: translation elongation factor activity	2.85E-02
87	GO:0003993: acid phosphatase activity	2.94E-02
88	GO:0051539: 4 iron, 4 sulfur cluster binding	3.13E-02
89	GO:0005525: GTP binding	3.27E-02
90	GO:0051537: 2 iron, 2 sulfur cluster binding	3.61E-02
91	GO:0015293: symporter activity	3.71E-02
92	GO:0051287: NAD binding	3.91E-02
93	GO:0003924: GTPase activity	3.96E-02
94	GO:0009055: electron carrier activity	4.24E-02
95	GO:0003690: double-stranded DNA binding	4.33E-02
96	GO:0015171: amino acid transmembrane transporter activity	4.54E-02
97	GO:0005215: transporter activity	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009570: chloroplast stroma	4.58E-33
3	GO:0009941: chloroplast envelope	1.98E-31
4	GO:0009507: chloroplast	1.49E-30
5	GO:0009579: thylakoid	4.38E-20
6	GO:0031977: thylakoid lumen	3.76E-13
7	GO:0009535: chloroplast thylakoid membrane	2.24E-10
8	GO:0009543: chloroplast thylakoid lumen	1.25E-09
9	GO:0005840: ribosome	3.75E-09
10	GO:0048046: apoplast	2.84E-06
11	GO:0010319: stromule	6.98E-06
12	GO:0000311: plastid large ribosomal subunit	9.76E-06
13	GO:0009534: chloroplast thylakoid	4.60E-05
14	GO:0009505: plant-type cell wall	6.46E-05
15	GO:0046658: anchored component of plasma membrane	7.04E-05
16	GO:0031225: anchored component of membrane	9.36E-05
17	GO:0031969: chloroplast membrane	1.54E-04
18	GO:0009547: plastid ribosome	1.56E-04
19	GO:0045298: tubulin complex	1.73E-04
20	GO:0008290: F-actin capping protein complex	3.55E-04
21	GO:0009528: plastid inner membrane	5.82E-04
22	GO:0042651: thylakoid membrane	6.43E-04
23	GO:0022626: cytosolic ribosome	8.48E-04
24	GO:0009527: plastid outer membrane	1.10E-03
25	GO:0009706: chloroplast inner membrane	1.14E-03
26	GO:0009536: plastid	1.20E-03
27	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.63E-03
28	GO:0005763: mitochondrial small ribosomal subunit	3.63E-03
29	GO:0016020: membrane	4.68E-03
30	GO:0005874: microtubule	4.93E-03
31	GO:0005884: actin filament	4.99E-03
32	GO:0030095: chloroplast photosystem II	6.50E-03
33	GO:0000312: plastid small ribosomal subunit	6.50E-03
34	GO:0030659: cytoplasmic vesicle membrane	6.50E-03
35	GO:0009654: photosystem II oxygen evolving complex	8.74E-03
36	GO:0009532: plastid stroma	9.34E-03
37	GO:0005871: kinesin complex	1.19E-02
38	GO:0005618: cell wall	1.20E-02
39	GO:0009523: photosystem II	1.46E-02
40	GO:0019898: extrinsic component of membrane	1.46E-02
41	GO:0016592: mediator complex	1.61E-02
42	GO:0005778: peroxisomal membrane	1.84E-02
43	GO:0005739: mitochondrion	1.91E-02
44	GO:0009506: plasmodesma	2.22E-02
45	GO:0009707: chloroplast outer membrane	2.41E-02
46	GO:0015934: large ribosomal subunit	2.67E-02
47	GO:0005819: spindle	3.04E-02
48	GO:0005743: mitochondrial inner membrane	3.68E-02