GO Enrichment Analysis of Co-expressed Genes with
AT2G31040
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 2 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 3 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 4 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 6 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 7 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 8 | GO:0006000: fructose metabolic process | 1.48E-09 |
| 9 | GO:0009773: photosynthetic electron transport in photosystem I | 1.78E-08 |
| 10 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 4.63E-07 |
| 11 | GO:0006002: fructose 6-phosphate metabolic process | 6.52E-07 |
| 12 | GO:0005983: starch catabolic process | 2.91E-06 |
| 13 | GO:0015979: photosynthesis | 4.47E-05 |
| 14 | GO:0010027: thylakoid membrane organization | 6.62E-05 |
| 15 | GO:0046900: tetrahydrofolylpolyglutamate metabolic process | 9.33E-05 |
| 16 | GO:1904966: positive regulation of vitamin E biosynthetic process | 9.33E-05 |
| 17 | GO:1904964: positive regulation of phytol biosynthetic process | 9.33E-05 |
| 18 | GO:0065002: intracellular protein transmembrane transport | 9.33E-05 |
| 19 | GO:0043609: regulation of carbon utilization | 9.33E-05 |
| 20 | GO:0000023: maltose metabolic process | 9.33E-05 |
| 21 | GO:0043953: protein transport by the Tat complex | 9.33E-05 |
| 22 | GO:0009443: pyridoxal 5'-phosphate salvage | 9.33E-05 |
| 23 | GO:0009853: photorespiration | 1.40E-04 |
| 24 | GO:0006094: gluconeogenesis | 1.83E-04 |
| 25 | GO:0005986: sucrose biosynthetic process | 1.83E-04 |
| 26 | GO:0080005: photosystem stoichiometry adjustment | 2.20E-04 |
| 27 | GO:0007154: cell communication | 2.20E-04 |
| 28 | GO:0097054: L-glutamate biosynthetic process | 2.20E-04 |
| 29 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.20E-04 |
| 30 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.20E-04 |
| 31 | GO:0034755: iron ion transmembrane transport | 2.20E-04 |
| 32 | GO:0009629: response to gravity | 2.20E-04 |
| 33 | GO:0061077: chaperone-mediated protein folding | 3.56E-04 |
| 34 | GO:0045910: negative regulation of DNA recombination | 3.67E-04 |
| 35 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 5.28E-04 |
| 36 | GO:0009152: purine ribonucleotide biosynthetic process | 5.28E-04 |
| 37 | GO:0046653: tetrahydrofolate metabolic process | 5.28E-04 |
| 38 | GO:0006537: glutamate biosynthetic process | 5.28E-04 |
| 39 | GO:0019252: starch biosynthetic process | 6.66E-04 |
| 40 | GO:0010021: amylopectin biosynthetic process | 7.02E-04 |
| 41 | GO:0019676: ammonia assimilation cycle | 7.02E-04 |
| 42 | GO:0019464: glycine decarboxylation via glycine cleavage system | 7.02E-04 |
| 43 | GO:0009765: photosynthesis, light harvesting | 7.02E-04 |
| 44 | GO:0045727: positive regulation of translation | 7.02E-04 |
| 45 | GO:0015994: chlorophyll metabolic process | 7.02E-04 |
| 46 | GO:0032543: mitochondrial translation | 8.88E-04 |
| 47 | GO:0009247: glycolipid biosynthetic process | 8.88E-04 |
| 48 | GO:0006544: glycine metabolic process | 8.88E-04 |
| 49 | GO:0006563: L-serine metabolic process | 1.08E-03 |
| 50 | GO:0006458: 'de novo' protein folding | 1.29E-03 |
| 51 | GO:0042026: protein refolding | 1.29E-03 |
| 52 | GO:0018298: protein-chromophore linkage | 1.30E-03 |
| 53 | GO:0009645: response to low light intensity stimulus | 1.51E-03 |
| 54 | GO:0009658: chloroplast organization | 1.61E-03 |
| 55 | GO:0019375: galactolipid biosynthetic process | 1.75E-03 |
| 56 | GO:0009704: de-etiolation | 1.75E-03 |
| 57 | GO:0032544: plastid translation | 2.00E-03 |
| 58 | GO:0017004: cytochrome complex assembly | 2.00E-03 |
| 59 | GO:0071482: cellular response to light stimulus | 2.00E-03 |
| 60 | GO:0010206: photosystem II repair | 2.25E-03 |
| 61 | GO:0035999: tetrahydrofolate interconversion | 2.52E-03 |
| 62 | GO:1900865: chloroplast RNA modification | 2.52E-03 |
| 63 | GO:0006298: mismatch repair | 2.80E-03 |
| 64 | GO:0006364: rRNA processing | 2.82E-03 |
| 65 | GO:0006879: cellular iron ion homeostasis | 3.09E-03 |
| 66 | GO:0009750: response to fructose | 3.09E-03 |
| 67 | GO:0006541: glutamine metabolic process | 4.01E-03 |
| 68 | GO:0019253: reductive pentose-phosphate cycle | 4.01E-03 |
| 69 | GO:0010207: photosystem II assembly | 4.01E-03 |
| 70 | GO:0005985: sucrose metabolic process | 4.33E-03 |
| 71 | GO:0009768: photosynthesis, light harvesting in photosystem I | 5.36E-03 |
| 72 | GO:0016575: histone deacetylation | 5.36E-03 |
| 73 | GO:0006418: tRNA aminoacylation for protein translation | 5.36E-03 |
| 74 | GO:0035428: hexose transmembrane transport | 6.09E-03 |
| 75 | GO:0016226: iron-sulfur cluster assembly | 6.09E-03 |
| 76 | GO:0009735: response to cytokinin | 6.36E-03 |
| 77 | GO:0006508: proteolysis | 6.41E-03 |
| 78 | GO:0009451: RNA modification | 7.04E-03 |
| 79 | GO:0009416: response to light stimulus | 7.13E-03 |
| 80 | GO:0006810: transport | 7.24E-03 |
| 81 | GO:0070417: cellular response to cold | 7.25E-03 |
| 82 | GO:0046323: glucose import | 8.06E-03 |
| 83 | GO:0006814: sodium ion transport | 8.47E-03 |
| 84 | GO:0080156: mitochondrial mRNA modification | 9.33E-03 |
| 85 | GO:0009567: double fertilization forming a zygote and endosperm | 1.07E-02 |
| 86 | GO:0016311: dephosphorylation | 1.41E-02 |
| 87 | GO:0009793: embryo development ending in seed dormancy | 1.44E-02 |
| 88 | GO:0006499: N-terminal protein myristoylation | 1.56E-02 |
| 89 | GO:0009631: cold acclimation | 1.62E-02 |
| 90 | GO:0032259: methylation | 1.87E-02 |
| 91 | GO:0009744: response to sucrose | 2.07E-02 |
| 92 | GO:0008152: metabolic process | 2.16E-02 |
| 93 | GO:0009644: response to high light intensity | 2.18E-02 |
| 94 | GO:0009409: response to cold | 2.55E-02 |
| 95 | GO:0006417: regulation of translation | 2.75E-02 |
| 96 | GO:0005975: carbohydrate metabolic process | 2.95E-02 |
| 97 | GO:0009626: plant-type hypersensitive response | 3.01E-02 |
| 98 | GO:0009624: response to nematode | 3.28E-02 |
| 99 | GO:0009058: biosynthetic process | 4.00E-02 |
| 100 | GO:0009790: embryo development | 4.30E-02 |
| 101 | GO:0055085: transmembrane transport | 4.39E-02 |
| 102 | GO:0006413: translational initiation | 4.61E-02 |
| 103 | GO:0007623: circadian rhythm | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 2 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 3 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 4 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 5 | GO:0005363: maltose transmembrane transporter activity | 0.00E+00 |
| 6 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 7 | GO:0010303: limit dextrinase activity | 0.00E+00 |
| 8 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 9 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 10 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 11 | GO:0051060: pullulanase activity | 0.00E+00 |
| 12 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 13 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 4.63E-07 |
| 14 | GO:0004033: aldo-keto reductase (NADP) activity | 5.09E-05 |
| 15 | GO:0070006: metalloaminopeptidase activity | 9.33E-05 |
| 16 | GO:0008242: omega peptidase activity | 9.33E-05 |
| 17 | GO:0016041: glutamate synthase (ferredoxin) activity | 9.33E-05 |
| 18 | GO:0003867: 4-aminobutyrate transaminase activity | 9.33E-05 |
| 19 | GO:0004856: xylulokinase activity | 9.33E-05 |
| 20 | GO:0008266: poly(U) RNA binding | 2.08E-04 |
| 21 | GO:0034722: gamma-glutamyl-peptidase activity | 2.20E-04 |
| 22 | GO:0047746: chlorophyllase activity | 2.20E-04 |
| 23 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 2.20E-04 |
| 24 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 2.20E-04 |
| 25 | GO:0033201: alpha-1,4-glucan synthase activity | 2.20E-04 |
| 26 | GO:0008967: phosphoglycolate phosphatase activity | 2.20E-04 |
| 27 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 3.67E-04 |
| 28 | GO:0070402: NADPH binding | 3.67E-04 |
| 29 | GO:0008864: formyltetrahydrofolate deformylase activity | 3.67E-04 |
| 30 | GO:0004373: glycogen (starch) synthase activity | 3.67E-04 |
| 31 | GO:0002161: aminoacyl-tRNA editing activity | 3.67E-04 |
| 32 | GO:0035250: UDP-galactosyltransferase activity | 5.28E-04 |
| 33 | GO:0048487: beta-tubulin binding | 5.28E-04 |
| 34 | GO:0008508: bile acid:sodium symporter activity | 5.28E-04 |
| 35 | GO:0004519: endonuclease activity | 6.67E-04 |
| 36 | GO:0009011: starch synthase activity | 7.02E-04 |
| 37 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 7.02E-04 |
| 38 | GO:0043495: protein anchor | 7.02E-04 |
| 39 | GO:0051538: 3 iron, 4 sulfur cluster binding | 8.88E-04 |
| 40 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 8.88E-04 |
| 41 | GO:0004372: glycine hydroxymethyltransferase activity | 8.88E-04 |
| 42 | GO:0016168: chlorophyll binding | 1.07E-03 |
| 43 | GO:0004556: alpha-amylase activity | 1.08E-03 |
| 44 | GO:2001070: starch binding | 1.08E-03 |
| 45 | GO:0030983: mismatched DNA binding | 1.08E-03 |
| 46 | GO:0004721: phosphoprotein phosphatase activity | 1.18E-03 |
| 47 | GO:0004222: metalloendopeptidase activity | 1.43E-03 |
| 48 | GO:0019899: enzyme binding | 1.51E-03 |
| 49 | GO:0043022: ribosome binding | 1.75E-03 |
| 50 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 2.00E-03 |
| 51 | GO:0005381: iron ion transmembrane transporter activity | 2.52E-03 |
| 52 | GO:0004177: aminopeptidase activity | 3.09E-03 |
| 53 | GO:0044183: protein binding involved in protein folding | 3.09E-03 |
| 54 | GO:0015386: potassium:proton antiporter activity | 3.09E-03 |
| 55 | GO:0004022: alcohol dehydrogenase (NAD) activity | 3.69E-03 |
| 56 | GO:0031409: pigment binding | 4.67E-03 |
| 57 | GO:0051536: iron-sulfur cluster binding | 5.01E-03 |
| 58 | GO:0004407: histone deacetylase activity | 5.01E-03 |
| 59 | GO:0005528: FK506 binding | 5.01E-03 |
| 60 | GO:0015079: potassium ion transmembrane transporter activity | 5.36E-03 |
| 61 | GO:0004176: ATP-dependent peptidase activity | 5.72E-03 |
| 62 | GO:0022891: substrate-specific transmembrane transporter activity | 6.47E-03 |
| 63 | GO:0004812: aminoacyl-tRNA ligase activity | 7.25E-03 |
| 64 | GO:0046872: metal ion binding | 8.17E-03 |
| 65 | GO:0050662: coenzyme binding | 8.47E-03 |
| 66 | GO:0005355: glucose transmembrane transporter activity | 8.47E-03 |
| 67 | GO:0048038: quinone binding | 9.33E-03 |
| 68 | GO:0008168: methyltransferase activity | 1.03E-02 |
| 69 | GO:0003684: damaged DNA binding | 1.07E-02 |
| 70 | GO:0008237: metallopeptidase activity | 1.11E-02 |
| 71 | GO:0008233: peptidase activity | 1.30E-02 |
| 72 | GO:0008236: serine-type peptidase activity | 1.41E-02 |
| 73 | GO:0043621: protein self-association | 2.18E-02 |
| 74 | GO:0005198: structural molecule activity | 2.24E-02 |
| 75 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.31E-02 |
| 76 | GO:0003723: RNA binding | 3.16E-02 |
| 77 | GO:0051082: unfolded protein binding | 3.28E-02 |
| 78 | GO:0019843: rRNA binding | 3.85E-02 |
| 79 | GO:0030170: pyridoxal phosphate binding | 4.15E-02 |
| 80 | GO:0004252: serine-type endopeptidase activity | 4.15E-02 |
| 81 | GO:0015144: carbohydrate transmembrane transporter activity | 4.38E-02 |
| 82 | GO:0016787: hydrolase activity | 4.50E-02 |
| 83 | GO:0005351: sugar:proton symporter activity | 4.76E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 9.60E-38 |
| 5 | GO:0009941: chloroplast envelope | 3.67E-16 |
| 6 | GO:0009570: chloroplast stroma | 5.16E-16 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 3.85E-15 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.35E-09 |
| 9 | GO:0009534: chloroplast thylakoid | 2.17E-08 |
| 10 | GO:0010287: plastoglobule | 2.63E-06 |
| 11 | GO:0009706: chloroplast inner membrane | 3.83E-05 |
| 12 | GO:0031361: integral component of thylakoid membrane | 9.33E-05 |
| 13 | GO:0009782: photosystem I antenna complex | 9.33E-05 |
| 14 | GO:0031357: integral component of chloroplast inner membrane | 2.20E-04 |
| 15 | GO:0031969: chloroplast membrane | 3.21E-04 |
| 16 | GO:0042651: thylakoid membrane | 3.24E-04 |
| 17 | GO:0009579: thylakoid | 3.54E-04 |
| 18 | GO:0033281: TAT protein transport complex | 3.67E-04 |
| 19 | GO:0009543: chloroplast thylakoid lumen | 6.28E-04 |
| 20 | GO:0010319: stromule | 9.05E-04 |
| 21 | GO:0009501: amyloplast | 1.75E-03 |
| 22 | GO:0030076: light-harvesting complex | 4.33E-03 |
| 23 | GO:0009536: plastid | 5.52E-03 |
| 24 | GO:0005759: mitochondrial matrix | 6.26E-03 |
| 25 | GO:0048046: apoplast | 8.60E-03 |
| 26 | GO:0009523: photosystem II | 8.90E-03 |
| 27 | GO:0016020: membrane | 9.96E-03 |
| 28 | GO:0031977: thylakoid lumen | 1.95E-02 |
| 29 | GO:0043231: intracellular membrane-bounded organelle | 2.16E-02 |
| 30 | GO:0016021: integral component of membrane | 2.41E-02 |