GO Enrichment Analysis of Co-expressed Genes with
AT2G29650
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046677: response to antibiotic | 0.00E+00 |
| 2 | GO:0010378: temperature compensation of the circadian clock | 0.00E+00 |
| 3 | GO:1903508: positive regulation of nucleic acid-templated transcription | 0.00E+00 |
| 4 | GO:1903428: positive regulation of reactive oxygen species biosynthetic process | 0.00E+00 |
| 5 | GO:0070584: mitochondrion morphogenesis | 0.00E+00 |
| 6 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.66E-24 |
| 7 | GO:0018298: protein-chromophore linkage | 1.21E-15 |
| 8 | GO:0015979: photosynthesis | 1.28E-13 |
| 9 | GO:0009645: response to low light intensity stimulus | 8.92E-10 |
| 10 | GO:0010218: response to far red light | 1.30E-09 |
| 11 | GO:0010114: response to red light | 4.76E-09 |
| 12 | GO:0009637: response to blue light | 1.17E-07 |
| 13 | GO:0009769: photosynthesis, light harvesting in photosystem II | 2.46E-07 |
| 14 | GO:0009644: response to high light intensity | 2.92E-07 |
| 15 | GO:0007623: circadian rhythm | 5.63E-06 |
| 16 | GO:0010600: regulation of auxin biosynthetic process | 7.19E-06 |
| 17 | GO:0009416: response to light stimulus | 2.59E-05 |
| 18 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 2.61E-05 |
| 19 | GO:0010196: nonphotochemical quenching | 3.54E-05 |
| 20 | GO:0010928: regulation of auxin mediated signaling pathway | 4.65E-05 |
| 21 | GO:0015812: gamma-aminobutyric acid transport | 8.78E-05 |
| 22 | GO:0032958: inositol phosphate biosynthetic process | 8.78E-05 |
| 23 | GO:0080065: 4-alpha-methyl-delta7-sterol oxidation | 8.78E-05 |
| 24 | GO:0051170: nuclear import | 2.08E-04 |
| 25 | GO:0050992: dimethylallyl diphosphate biosynthetic process | 2.08E-04 |
| 26 | GO:0009585: red, far-red light phototransduction | 2.69E-04 |
| 27 | GO:0080167: response to karrikin | 2.82E-04 |
| 28 | GO:0003333: amino acid transmembrane transport | 3.29E-04 |
| 29 | GO:0048511: rhythmic process | 3.29E-04 |
| 30 | GO:0006598: polyamine catabolic process | 3.48E-04 |
| 31 | GO:1902448: positive regulation of shade avoidance | 3.48E-04 |
| 32 | GO:0010017: red or far-red light signaling pathway | 3.60E-04 |
| 33 | GO:0006020: inositol metabolic process | 5.01E-04 |
| 34 | GO:0044211: CTP salvage | 5.01E-04 |
| 35 | GO:0044206: UMP salvage | 6.66E-04 |
| 36 | GO:0015846: polyamine transport | 6.66E-04 |
| 37 | GO:0030104: water homeostasis | 6.66E-04 |
| 38 | GO:0009765: photosynthesis, light harvesting | 6.66E-04 |
| 39 | GO:2000306: positive regulation of photomorphogenesis | 6.66E-04 |
| 40 | GO:0043097: pyrimidine nucleoside salvage | 8.44E-04 |
| 41 | GO:0016123: xanthophyll biosynthetic process | 8.44E-04 |
| 42 | GO:0048578: positive regulation of long-day photoperiodism, flowering | 8.44E-04 |
| 43 | GO:0006206: pyrimidine nucleobase metabolic process | 1.03E-03 |
| 44 | GO:0009635: response to herbicide | 1.03E-03 |
| 45 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.03E-03 |
| 46 | GO:0045962: positive regulation of development, heterochronic | 1.03E-03 |
| 47 | GO:0015995: chlorophyll biosynthetic process | 1.09E-03 |
| 48 | GO:0009861: jasmonic acid and ethylene-dependent systemic resistance | 1.23E-03 |
| 49 | GO:0000160: phosphorelay signal transduction system | 1.26E-03 |
| 50 | GO:0009409: response to cold | 1.32E-03 |
| 51 | GO:0051510: regulation of unidimensional cell growth | 1.44E-03 |
| 52 | GO:0010161: red light signaling pathway | 1.44E-03 |
| 53 | GO:1900056: negative regulation of leaf senescence | 1.44E-03 |
| 54 | GO:0009704: de-etiolation | 1.66E-03 |
| 55 | GO:0006351: transcription, DNA-templated | 1.66E-03 |
| 56 | GO:0042542: response to hydrogen peroxide | 1.87E-03 |
| 57 | GO:0007186: G-protein coupled receptor signaling pathway | 1.89E-03 |
| 58 | GO:0010099: regulation of photomorphogenesis | 1.89E-03 |
| 59 | GO:0009827: plant-type cell wall modification | 1.89E-03 |
| 60 | GO:0009640: photomorphogenesis | 1.94E-03 |
| 61 | GO:0008643: carbohydrate transport | 2.10E-03 |
| 62 | GO:0090333: regulation of stomatal closure | 2.14E-03 |
| 63 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 2.39E-03 |
| 64 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.39E-03 |
| 65 | GO:0045892: negative regulation of transcription, DNA-templated | 2.44E-03 |
| 66 | GO:0055062: phosphate ion homeostasis | 2.65E-03 |
| 67 | GO:0009688: abscisic acid biosynthetic process | 2.65E-03 |
| 68 | GO:0009641: shade avoidance | 2.65E-03 |
| 69 | GO:0006355: regulation of transcription, DNA-templated | 2.81E-03 |
| 70 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.93E-03 |
| 71 | GO:0018107: peptidyl-threonine phosphorylation | 3.50E-03 |
| 72 | GO:0009718: anthocyanin-containing compound biosynthetic process | 3.50E-03 |
| 73 | GO:0009767: photosynthetic electron transport chain | 3.50E-03 |
| 74 | GO:0010207: photosystem II assembly | 3.80E-03 |
| 75 | GO:0009266: response to temperature stimulus | 3.80E-03 |
| 76 | GO:0090351: seedling development | 4.10E-03 |
| 77 | GO:0042023: DNA endoreduplication | 4.42E-03 |
| 78 | GO:0006874: cellular calcium ion homeostasis | 5.07E-03 |
| 79 | GO:0009269: response to desiccation | 5.42E-03 |
| 80 | GO:0009735: response to cytokinin | 5.75E-03 |
| 81 | GO:0009693: ethylene biosynthetic process | 6.12E-03 |
| 82 | GO:0071215: cellular response to abscisic acid stimulus | 6.12E-03 |
| 83 | GO:0010182: sugar mediated signaling pathway | 7.62E-03 |
| 84 | GO:0009741: response to brassinosteroid | 7.62E-03 |
| 85 | GO:0007018: microtubule-based movement | 8.02E-03 |
| 86 | GO:0042752: regulation of circadian rhythm | 8.02E-03 |
| 87 | GO:0009791: post-embryonic development | 8.42E-03 |
| 88 | GO:0000302: response to reactive oxygen species | 8.83E-03 |
| 89 | GO:1901657: glycosyl compound metabolic process | 9.67E-03 |
| 90 | GO:0009658: chloroplast organization | 9.83E-03 |
| 91 | GO:0016126: sterol biosynthetic process | 1.14E-02 |
| 92 | GO:0048573: photoperiodism, flowering | 1.28E-02 |
| 93 | GO:0044550: secondary metabolite biosynthetic process | 1.33E-02 |
| 94 | GO:0009817: defense response to fungus, incompatible interaction | 1.38E-02 |
| 95 | GO:0006811: ion transport | 1.48E-02 |
| 96 | GO:0010119: regulation of stomatal movement | 1.53E-02 |
| 97 | GO:0007568: aging | 1.53E-02 |
| 98 | GO:0009910: negative regulation of flower development | 1.53E-02 |
| 99 | GO:0006865: amino acid transport | 1.58E-02 |
| 100 | GO:0051707: response to other organism | 1.95E-02 |
| 101 | GO:0009965: leaf morphogenesis | 2.12E-02 |
| 102 | GO:0009651: response to salt stress | 2.22E-02 |
| 103 | GO:0055114: oxidation-reduction process | 2.39E-02 |
| 104 | GO:0009909: regulation of flower development | 2.60E-02 |
| 105 | GO:0005975: carbohydrate metabolic process | 2.67E-02 |
| 106 | GO:0043086: negative regulation of catalytic activity | 2.72E-02 |
| 107 | GO:0046686: response to cadmium ion | 2.75E-02 |
| 108 | GO:0009908: flower development | 2.90E-02 |
| 109 | GO:0018105: peptidyl-serine phosphorylation | 3.17E-02 |
| 110 | GO:0009742: brassinosteroid mediated signaling pathway | 3.23E-02 |
| 111 | GO:0009611: response to wounding | 3.28E-02 |
| 112 | GO:0035556: intracellular signal transduction | 3.38E-02 |
| 113 | GO:0000398: mRNA splicing, via spliceosome | 3.44E-02 |
| 114 | GO:0009058: biosynthetic process | 3.78E-02 |
| 115 | GO:0009845: seed germination | 3.85E-02 |
| 116 | GO:0009737: response to abscisic acid | 4.05E-02 |
| 117 | GO:0010228: vegetative to reproductive phase transition of meristem | 4.73E-02 |
| 118 | GO:0016310: phosphorylation | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 2 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 3 | GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | 0.00E+00 |
| 4 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 5 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 6 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 7 | GO:0009540: zeaxanthin epoxidase [overall] activity | 0.00E+00 |
| 8 | GO:0031409: pigment binding | 4.78E-22 |
| 9 | GO:0016168: chlorophyll binding | 2.96E-18 |
| 10 | GO:0000828: inositol hexakisphosphate kinase activity | 8.78E-05 |
| 11 | GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | 8.78E-05 |
| 12 | GO:0015185: gamma-aminobutyric acid transmembrane transporter activity | 8.78E-05 |
| 13 | GO:0033857: diphosphoinositol-pentakisphosphate kinase activity | 8.78E-05 |
| 14 | GO:0000829: inositol heptakisphosphate kinase activity | 8.78E-05 |
| 15 | GO:0080079: cellobiose glucosidase activity | 8.78E-05 |
| 16 | GO:0000978: RNA polymerase II core promoter proximal region sequence-specific DNA binding | 8.78E-05 |
| 17 | GO:0030371: translation repressor activity | 8.78E-05 |
| 18 | GO:0015180: L-alanine transmembrane transporter activity | 2.08E-04 |
| 19 | GO:0004103: choline kinase activity | 2.08E-04 |
| 20 | GO:0080045: quercetin 3'-O-glucosyltransferase activity | 2.08E-04 |
| 21 | GO:0001078: transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.08E-04 |
| 22 | GO:0046592: polyamine oxidase activity | 3.48E-04 |
| 23 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 3.48E-04 |
| 24 | GO:0046872: metal ion binding | 4.01E-04 |
| 25 | GO:0015181: arginine transmembrane transporter activity | 5.01E-04 |
| 26 | GO:0015203: polyamine transmembrane transporter activity | 5.01E-04 |
| 27 | GO:0015189: L-lysine transmembrane transporter activity | 5.01E-04 |
| 28 | GO:0000254: C-4 methylsterol oxidase activity | 5.01E-04 |
| 29 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 5.87E-04 |
| 30 | GO:0005313: L-glutamate transmembrane transporter activity | 6.66E-04 |
| 31 | GO:0004930: G-protein coupled receptor activity | 6.66E-04 |
| 32 | GO:0004845: uracil phosphoribosyltransferase activity | 6.66E-04 |
| 33 | GO:0000156: phosphorelay response regulator activity | 7.47E-04 |
| 34 | GO:0015297: antiporter activity | 8.01E-04 |
| 35 | GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | 8.44E-04 |
| 36 | GO:0051538: 3 iron, 4 sulfur cluster binding | 8.44E-04 |
| 37 | GO:0004462: lactoylglutathione lyase activity | 1.03E-03 |
| 38 | GO:0080046: quercetin 4'-O-glucosyltransferase activity | 1.03E-03 |
| 39 | GO:0004849: uridine kinase activity | 1.23E-03 |
| 40 | GO:0071949: FAD binding | 2.14E-03 |
| 41 | GO:0000989: transcription factor activity, transcription factor binding | 2.14E-03 |
| 42 | GO:0015174: basic amino acid transmembrane transporter activity | 2.39E-03 |
| 43 | GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity | 2.65E-03 |
| 44 | GO:0015171: amino acid transmembrane transporter activity | 2.88E-03 |
| 45 | GO:0047372: acylglycerol lipase activity | 2.93E-03 |
| 46 | GO:0005515: protein binding | 3.34E-03 |
| 47 | GO:0004565: beta-galactosidase activity | 3.50E-03 |
| 48 | GO:0004022: alcohol dehydrogenase (NAD) activity | 3.50E-03 |
| 49 | GO:0005506: iron ion binding | 3.50E-03 |
| 50 | GO:0008131: primary amine oxidase activity | 3.80E-03 |
| 51 | GO:0005217: intracellular ligand-gated ion channel activity | 4.10E-03 |
| 52 | GO:0003712: transcription cofactor activity | 4.10E-03 |
| 53 | GO:0004970: ionotropic glutamate receptor activity | 4.10E-03 |
| 54 | GO:0005216: ion channel activity | 5.07E-03 |
| 55 | GO:0004707: MAP kinase activity | 5.42E-03 |
| 56 | GO:0016787: hydrolase activity | 1.14E-02 |
| 57 | GO:0004497: monooxygenase activity | 1.22E-02 |
| 58 | GO:0102483: scopolin beta-glucosidase activity | 1.28E-02 |
| 59 | GO:0003677: DNA binding | 1.30E-02 |
| 60 | GO:0003993: acid phosphatase activity | 1.68E-02 |
| 61 | GO:0008422: beta-glucosidase activity | 1.74E-02 |
| 62 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 1.88E-02 |
| 63 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.06E-02 |
| 64 | GO:0005198: structural molecule activity | 2.12E-02 |
| 65 | GO:0015293: symporter activity | 2.12E-02 |
| 66 | GO:0004672: protein kinase activity | 2.56E-02 |
| 67 | GO:0003777: microtubule motor activity | 2.60E-02 |
| 68 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 2.91E-02 |
| 69 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 2.91E-02 |
| 70 | GO:0016874: ligase activity | 2.97E-02 |
| 71 | GO:0022857: transmembrane transporter activity | 2.97E-02 |
| 72 | GO:0016829: lyase activity | 3.85E-02 |
| 73 | GO:0004674: protein serine/threonine kinase activity | 3.90E-02 |
| 74 | GO:0046910: pectinesterase inhibitor activity | 4.35E-02 |
| 75 | GO:0005351: sugar:proton symporter activity | 4.50E-02 |
| 76 | GO:0019825: oxygen binding | 4.55E-02 |
| 77 | GO:0008017: microtubule binding | 4.73E-02 |
| 78 | GO:0008194: UDP-glycosyltransferase activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009783: photosystem II antenna complex | 0.00E+00 |
| 2 | GO:0009522: photosystem I | 1.11E-19 |
| 3 | GO:0030076: light-harvesting complex | 3.34E-17 |
| 4 | GO:0010287: plastoglobule | 1.77E-16 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 3.84E-14 |
| 6 | GO:0009579: thylakoid | 4.72E-14 |
| 7 | GO:0009534: chloroplast thylakoid | 5.03E-14 |
| 8 | GO:0009941: chloroplast envelope | 6.71E-13 |
| 9 | GO:0009523: photosystem II | 8.20E-09 |
| 10 | GO:0042651: thylakoid membrane | 1.09E-07 |
| 11 | GO:0009507: chloroplast | 3.29E-06 |
| 12 | GO:0009517: PSII associated light-harvesting complex II | 7.19E-06 |
| 13 | GO:0016021: integral component of membrane | 6.44E-05 |
| 14 | GO:0009533: chloroplast stromal thylakoid | 1.44E-03 |
| 15 | GO:0009538: photosystem I reaction center | 1.66E-03 |
| 16 | GO:0016020: membrane | 3.38E-03 |
| 17 | GO:0030095: chloroplast photosystem II | 3.80E-03 |
| 18 | GO:0009654: photosystem II oxygen evolving complex | 5.07E-03 |
| 19 | GO:0005871: kinesin complex | 6.86E-03 |
| 20 | GO:0019898: extrinsic component of membrane | 8.42E-03 |
| 21 | GO:0031977: thylakoid lumen | 1.84E-02 |
| 22 | GO:0031966: mitochondrial membrane | 2.29E-02 |
| 23 | GO:0005887: integral component of plasma membrane | 2.45E-02 |
| 24 | GO:0016607: nuclear speck | 2.78E-02 |
| 25 | GO:0009706: chloroplast inner membrane | 3.10E-02 |
| 26 | GO:0005654: nucleoplasm | 3.57E-02 |
| 27 | GO:0009543: chloroplast thylakoid lumen | 3.64E-02 |
| 28 | GO:0005623: cell | 3.71E-02 |