co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061635: regulation of protein complex stability	0.00E+00
2	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
3	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
4	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
5	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
6	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
7	GO:0034337: RNA folding	0.00E+00
8	GO:0009773: photosynthetic electron transport in photosystem I	4.82E-09
9	GO:0010027: thylakoid membrane organization	1.56E-06
10	GO:0015979: photosynthesis	1.69E-06
11	GO:0032544: plastid translation	7.67E-06
12	GO:0010205: photoinhibition	1.45E-05
13	GO:0080170: hydrogen peroxide transmembrane transport	2.46E-05
14	GO:0015994: chlorophyll metabolic process	4.46E-05
15	GO:0010207: photosystem II assembly	4.63E-05
16	GO:0006636: unsaturated fatty acid biosynthetic process	6.61E-05
17	GO:0009306: protein secretion	1.53E-04
18	GO:0034220: ion transmembrane transport	1.93E-04
19	GO:0043953: protein transport by the Tat complex	2.55E-04
20	GO:1904966: positive regulation of vitamin E biosynthetic process	2.55E-04
21	GO:0000481: maturation of 5S rRNA	2.55E-04
22	GO:1904964: positive regulation of phytol biosynthetic process	2.55E-04
23	GO:0065002: intracellular protein transmembrane transport	2.55E-04
24	GO:0006106: fumarate metabolic process	2.55E-04
25	GO:1902458: positive regulation of stomatal opening	2.55E-04
26	GO:0010028: xanthophyll cycle	2.55E-04
27	GO:0000305: response to oxygen radical	2.55E-04
28	GO:0015936: coenzyme A metabolic process	2.55E-04
29	GO:0010206: photosystem II repair	3.55E-04
30	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.64E-04
31	GO:0035304: regulation of protein dephosphorylation	5.64E-04
32	GO:0080005: photosystem stoichiometry adjustment	5.64E-04
33	GO:1900871: chloroplast mRNA modification	5.64E-04
34	GO:0018026: peptidyl-lysine monomethylation	5.64E-04
35	GO:0080009: mRNA methylation	5.64E-04
36	GO:0016122: xanthophyll metabolic process	5.64E-04
37	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.64E-04
38	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.64E-04
39	GO:0015995: chlorophyll biosynthetic process	5.73E-04
40	GO:0009735: response to cytokinin	6.76E-04
41	GO:0006094: gluconeogenesis	7.37E-04
42	GO:0005975: carbohydrate metabolic process	7.42E-04
43	GO:0006000: fructose metabolic process	9.15E-04
44	GO:0006954: inflammatory response	9.15E-04
45	GO:0090391: granum assembly	9.15E-04
46	GO:0006518: peptide metabolic process	9.15E-04
47	GO:0016050: vesicle organization	9.15E-04
48	GO:1902448: positive regulation of shade avoidance	9.15E-04
49	GO:0006833: water transport	1.03E-03
50	GO:0008299: isoprenoid biosynthetic process	1.25E-03
51	GO:0055085: transmembrane transport	1.29E-03
52	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.31E-03
53	GO:0009152: purine ribonucleotide biosynthetic process	1.31E-03
54	GO:0046653: tetrahydrofolate metabolic process	1.31E-03
55	GO:0006364: rRNA processing	1.75E-03
56	GO:0030104: water homeostasis	1.75E-03
57	GO:0006749: glutathione metabolic process	1.75E-03
58	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.75E-03
59	GO:0010021: amylopectin biosynthetic process	1.75E-03
60	GO:0010109: regulation of photosynthesis	1.75E-03
61	GO:0009765: photosynthesis, light harvesting	1.75E-03
62	GO:0045727: positive regulation of translation	1.75E-03
63	GO:0042335: cuticle development	2.07E-03
64	GO:0045038: protein import into chloroplast thylakoid membrane	2.23E-03
65	GO:0019252: starch biosynthetic process	2.57E-03
66	GO:0009913: epidermal cell differentiation	2.75E-03
67	GO:0006655: phosphatidylglycerol biosynthetic process	2.75E-03
68	GO:0042549: photosystem II stabilization	2.75E-03
69	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.75E-03
70	GO:0016554: cytidine to uridine editing	2.75E-03
71	GO:0009416: response to light stimulus	3.14E-03
72	GO:1901259: chloroplast rRNA processing	3.30E-03
73	GO:0010196: nonphotochemical quenching	3.89E-03
74	GO:1900057: positive regulation of leaf senescence	3.89E-03
75	GO:0010444: guard mother cell differentiation	3.89E-03
76	GO:0008610: lipid biosynthetic process	4.52E-03
77	GO:0005978: glycogen biosynthetic process	4.52E-03
78	GO:0009642: response to light intensity	4.52E-03
79	GO:0030091: protein repair	4.52E-03
80	GO:0006605: protein targeting	4.52E-03
81	GO:0032508: DNA duplex unwinding	4.52E-03
82	GO:2000070: regulation of response to water deprivation	4.52E-03
83	GO:0010492: maintenance of shoot apical meristem identity	4.52E-03
84	GO:0006633: fatty acid biosynthetic process	4.87E-03
85	GO:0018298: protein-chromophore linkage	5.18E-03
86	GO:0006002: fructose 6-phosphate metabolic process	5.18E-03
87	GO:0048507: meristem development	5.86E-03
88	GO:0009409: response to cold	5.90E-03
89	GO:0009631: cold acclimation	5.99E-03
90	GO:0007166: cell surface receptor signaling pathway	6.51E-03
91	GO:1900865: chloroplast RNA modification	6.58E-03
92	GO:0009638: phototropism	6.58E-03
93	GO:0019684: photosynthesis, light reaction	8.11E-03
94	GO:1903507: negative regulation of nucleic acid-templated transcription	8.11E-03
95	GO:0009684: indoleacetic acid biosynthetic process	8.11E-03
96	GO:0000038: very long-chain fatty acid metabolic process	8.11E-03
97	GO:0016024: CDP-diacylglycerol biosynthetic process	8.92E-03
98	GO:0009785: blue light signaling pathway	9.75E-03
99	GO:0010628: positive regulation of gene expression	9.75E-03
100	GO:0006108: malate metabolic process	9.75E-03
101	GO:0050826: response to freezing	9.75E-03
102	GO:0009718: anthocyanin-containing compound biosynthetic process	9.75E-03
103	GO:0005986: sucrose biosynthetic process	9.75E-03
104	GO:0006855: drug transmembrane transport	9.89E-03
105	GO:0019253: reductive pentose-phosphate cycle	1.06E-02
106	GO:0005985: sucrose metabolic process	1.15E-02
107	GO:0071732: cellular response to nitric oxide	1.15E-02
108	GO:0010030: positive regulation of seed germination	1.15E-02
109	GO:0010025: wax biosynthetic process	1.24E-02
110	GO:0009833: plant-type primary cell wall biogenesis	1.24E-02
111	GO:0031408: oxylipin biosynthetic process	1.53E-02
112	GO:0035428: hexose transmembrane transport	1.64E-02
113	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.64E-02
114	GO:0071369: cellular response to ethylene stimulus	1.74E-02
115	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.95E-02
116	GO:0042631: cellular response to water deprivation	2.07E-02
117	GO:0006810: transport	2.08E-02
118	GO:0046323: glucose import	2.18E-02
119	GO:0008152: metabolic process	2.33E-02
120	GO:0071554: cell wall organization or biogenesis	2.53E-02
121	GO:0000302: response to reactive oxygen species	2.53E-02
122	GO:0016032: viral process	2.65E-02
123	GO:0030163: protein catabolic process	2.78E-02
124	GO:0071281: cellular response to iron ion	2.78E-02
125	GO:1901657: glycosyl compound metabolic process	2.78E-02
126	GO:0007623: circadian rhythm	2.83E-02
127	GO:0009567: double fertilization forming a zygote and endosperm	2.90E-02
128	GO:0016126: sterol biosynthetic process	3.29E-02
129	GO:0042128: nitrate assimilation	3.56E-02
130	GO:0030244: cellulose biosynthetic process	3.97E-02
131	GO:0000160: phosphorelay signal transduction system	4.12E-02
132	GO:0042254: ribosome biogenesis	4.44E-02
133	GO:0016051: carbohydrate biosynthetic process	4.70E-02
134	GO:0009853: photorespiration	4.70E-02
135	GO:0034599: cellular response to oxidative stress	4.85E-02
136	GO:0006099: tricarboxylic acid cycle	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
3	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
4	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
5	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
6	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
7	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
8	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
9	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.02E-06
10	GO:0005528: FK506 binding	7.77E-05
11	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.55E-04
12	GO:0010242: oxygen evolving activity	2.55E-04
13	GO:0004856: xylulokinase activity	2.55E-04
14	GO:0045485: omega-6 fatty acid desaturase activity	2.55E-04
15	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.55E-04
16	GO:0004333: fumarate hydratase activity	2.55E-04
17	GO:0050139: nicotinate-N-glucosyltransferase activity	2.55E-04
18	GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity	2.55E-04
19	GO:0042282: hydroxymethylglutaryl-CoA reductase activity	2.55E-04
20	GO:0015250: water channel activity	4.65E-04
21	GO:0016168: chlorophyll binding	5.00E-04
22	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	5.64E-04
23	GO:0004362: glutathione-disulfide reductase activity	5.64E-04
24	GO:0047746: chlorophyllase activity	5.64E-04
25	GO:0016868: intramolecular transferase activity, phosphotransferases	5.64E-04
26	GO:0033201: alpha-1,4-glucan synthase activity	5.64E-04
27	GO:0004312: fatty acid synthase activity	5.64E-04
28	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.64E-04
29	GO:0019843: rRNA binding	6.29E-04
30	GO:0004565: beta-galactosidase activity	7.37E-04
31	GO:0009982: pseudouridine synthase activity	7.37E-04
32	GO:0008266: poly(U) RNA binding	8.30E-04
33	GO:0004751: ribose-5-phosphate isomerase activity	9.15E-04
34	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.15E-04
35	GO:0070402: NADPH binding	9.15E-04
36	GO:0008864: formyltetrahydrofolate deformylase activity	9.15E-04
37	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	9.15E-04
38	GO:0004373: glycogen (starch) synthase activity	9.15E-04
39	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	9.20E-04
40	GO:0016851: magnesium chelatase activity	1.31E-03
41	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.31E-03
42	GO:0001872: (1->3)-beta-D-glucan binding	1.31E-03
43	GO:0019201: nucleotide kinase activity	1.31E-03
44	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.46E-03
45	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.46E-03
46	GO:0022891: substrate-specific transmembrane transporter activity	1.63E-03
47	GO:0016787: hydrolase activity	1.68E-03
48	GO:0043495: protein anchor	1.75E-03
49	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.75E-03
50	GO:0009011: starch synthase activity	1.75E-03
51	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.75E-03
52	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.75E-03
53	GO:0016279: protein-lysine N-methyltransferase activity	1.75E-03
54	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.23E-03
55	GO:0004040: amidase activity	2.23E-03
56	GO:0004130: cytochrome-c peroxidase activity	2.75E-03
57	GO:0042578: phosphoric ester hydrolase activity	2.75E-03
58	GO:0004332: fructose-bisphosphate aldolase activity	2.75E-03
59	GO:0004017: adenylate kinase activity	3.30E-03
60	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.30E-03
61	GO:0019899: enzyme binding	3.89E-03
62	GO:0043022: ribosome binding	4.52E-03
63	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.18E-03
64	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.18E-03
65	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	5.86E-03
66	GO:0003729: mRNA binding	7.10E-03
67	GO:0015020: glucuronosyltransferase activity	7.33E-03
68	GO:0042802: identical protein binding	7.45E-03
69	GO:0050661: NADP binding	7.48E-03
70	GO:0047372: acylglycerol lipase activity	8.11E-03
71	GO:0004022: alcohol dehydrogenase (NAD) activity	9.75E-03
72	GO:0031072: heat shock protein binding	9.75E-03
73	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.24E-02
74	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.24E-02
75	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.24E-02
76	GO:0003714: transcription corepressor activity	1.34E-02
77	GO:0003723: RNA binding	1.49E-02
78	GO:0005515: protein binding	1.63E-02
79	GO:0016746: transferase activity, transferring acyl groups	1.68E-02
80	GO:0004871: signal transducer activity	1.68E-02
81	GO:0016760: cellulose synthase (UDP-forming) activity	1.74E-02
82	GO:0003756: protein disulfide isomerase activity	1.85E-02
83	GO:0010181: FMN binding	2.29E-02
84	GO:0005355: glucose transmembrane transporter activity	2.29E-02
85	GO:0050662: coenzyme binding	2.29E-02
86	GO:0016853: isomerase activity	2.29E-02
87	GO:0019901: protein kinase binding	2.41E-02
88	GO:0004518: nuclease activity	2.65E-02
89	GO:0000156: phosphorelay response regulator activity	2.78E-02
90	GO:0016759: cellulose synthase activity	2.90E-02
91	GO:0016597: amino acid binding	3.16E-02
92	GO:0016413: O-acetyltransferase activity	3.16E-02
93	GO:0008375: acetylglucosaminyltransferase activity	3.56E-02
94	GO:0030247: polysaccharide binding	3.70E-02
95	GO:0102483: scopolin beta-glucosidase activity	3.70E-02
96	GO:0008236: serine-type peptidase activity	3.83E-02
97	GO:0015238: drug transmembrane transporter activity	4.12E-02
98	GO:0004222: metalloendopeptidase activity	4.26E-02
99	GO:0030145: manganese ion binding	4.41E-02
100	GO:0016788: hydrolase activity, acting on ester bonds	4.44E-02
101	GO:0003746: translation elongation factor activity	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009507: chloroplast	3.36E-43
3	GO:0009535: chloroplast thylakoid membrane	6.01E-26
4	GO:0009534: chloroplast thylakoid	1.94E-25
5	GO:0009570: chloroplast stroma	2.28E-18
6	GO:0009941: chloroplast envelope	4.60E-14
7	GO:0009579: thylakoid	4.80E-11
8	GO:0009543: chloroplast thylakoid lumen	8.92E-10
9	GO:0031977: thylakoid lumen	4.03E-07
10	GO:0033281: TAT protein transport complex	1.09E-05
11	GO:0009501: amyloplast	2.38E-04
12	GO:0009515: granal stacked thylakoid	2.55E-04
13	GO:0045239: tricarboxylic acid cycle enzyme complex	2.55E-04
14	GO:0031361: integral component of thylakoid membrane	2.55E-04
15	GO:0043674: columella	2.55E-04
16	GO:0030093: chloroplast photosystem I	5.64E-04
17	GO:0010287: plastoglobule	5.78E-04
18	GO:0031969: chloroplast membrane	5.80E-04
19	GO:0032040: small-subunit processome	6.51E-04
20	GO:0016021: integral component of membrane	6.66E-04
21	GO:0009508: plastid chromosome	7.37E-04
22	GO:0030095: chloroplast photosystem II	8.30E-04
23	GO:0010007: magnesium chelatase complex	9.15E-04
24	GO:0009654: photosystem II oxygen evolving complex	1.25E-03
25	GO:0009522: photosystem I	2.40E-03
26	GO:0009523: photosystem II	2.57E-03
27	GO:0019898: extrinsic component of membrane	2.57E-03
28	GO:0009295: nucleoid	3.54E-03
29	GO:0005840: ribosome	3.57E-03
30	GO:0042807: central vacuole	3.89E-03
31	GO:0009533: chloroplast stromal thylakoid	3.89E-03
32	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.86E-03
33	GO:0008180: COP9 signalosome	5.86E-03
34	GO:0016020: membrane	8.81E-03
35	GO:0042651: thylakoid membrane	1.43E-02
36	GO:0009536: plastid	1.53E-02
37	GO:0009706: chloroplast inner membrane	1.63E-02
38	GO:0005887: integral component of plasma membrane	3.02E-02
39	GO:0010319: stromule	3.03E-02
40	GO:0005773: vacuole	3.37E-02
41	GO:0019005: SCF ubiquitin ligase complex	3.97E-02
42	GO:0015934: large ribosomal subunit	4.41E-02