co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070212: protein poly-ADP-ribosylation	0.00E+00
2	GO:0045792: negative regulation of cell size	0.00E+00
3	GO:0090069: regulation of ribosome biogenesis	0.00E+00
4	GO:0042430: indole-containing compound metabolic process	0.00E+00
5	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
6	GO:0072722: response to amitrole	0.00E+00
7	GO:0042742: defense response to bacterium	2.88E-09
8	GO:0009617: response to bacterium	9.72E-09
9	GO:0006468: protein phosphorylation	1.09E-07
10	GO:0010193: response to ozone	4.02E-06
11	GO:0048281: inflorescence morphogenesis	4.44E-06
12	GO:0009816: defense response to bacterium, incompatible interaction	1.01E-05
13	GO:0001676: long-chain fatty acid metabolic process	1.03E-05
14	GO:0010200: response to chitin	1.79E-05
15	GO:0080142: regulation of salicylic acid biosynthetic process	1.93E-05
16	GO:0060548: negative regulation of cell death	1.93E-05
17	GO:0009697: salicylic acid biosynthetic process	3.14E-05
18	GO:0010150: leaf senescence	3.76E-05
19	GO:0000302: response to reactive oxygen species	1.08E-04
20	GO:0006891: intra-Golgi vesicle-mediated transport	1.08E-04
21	GO:0009700: indole phytoalexin biosynthetic process	1.56E-04
22	GO:2000232: regulation of rRNA processing	1.56E-04
23	GO:0046244: salicylic acid catabolic process	1.56E-04
24	GO:0060862: negative regulation of floral organ abscission	1.56E-04
25	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.56E-04
26	GO:0010112: regulation of systemic acquired resistance	1.73E-04
27	GO:0009627: systemic acquired resistance	2.15E-04
28	GO:0045454: cell redox homeostasis	2.20E-04
29	GO:0009407: toxin catabolic process	3.03E-04
30	GO:0009751: response to salicylic acid	3.20E-04
31	GO:0006952: defense response	3.35E-04
32	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.55E-04
33	GO:0031349: positive regulation of defense response	3.55E-04
34	GO:1902000: homogentisate catabolic process	3.55E-04
35	GO:0008535: respiratory chain complex IV assembly	3.55E-04
36	GO:0002221: pattern recognition receptor signaling pathway	3.55E-04
37	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	3.55E-04
38	GO:0009409: response to cold	3.84E-04
39	GO:0002237: response to molecule of bacterial origin	4.23E-04
40	GO:0007166: cell surface receptor signaling pathway	4.32E-04
41	GO:0070588: calcium ion transmembrane transport	4.74E-04
42	GO:0034976: response to endoplasmic reticulum stress	5.28E-04
43	GO:0046686: response to cadmium ion	5.29E-04
44	GO:0010272: response to silver ion	5.82E-04
45	GO:0009072: aromatic amino acid family metabolic process	5.82E-04
46	GO:0010581: regulation of starch biosynthetic process	5.82E-04
47	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	5.82E-04
48	GO:0055074: calcium ion homeostasis	5.82E-04
49	GO:1900140: regulation of seedling development	5.82E-04
50	GO:0009814: defense response, incompatible interaction	7.69E-04
51	GO:0031348: negative regulation of defense response	7.69E-04
52	GO:0002239: response to oomycetes	8.33E-04
53	GO:0009855: determination of bilateral symmetry	8.33E-04
54	GO:0000187: activation of MAPK activity	8.33E-04
55	GO:0048194: Golgi vesicle budding	8.33E-04
56	GO:0033617: mitochondrial respiratory chain complex IV assembly	8.33E-04
57	GO:0009625: response to insect	8.37E-04
58	GO:0042273: ribosomal large subunit biogenesis	1.10E-03
59	GO:0006621: protein retention in ER lumen	1.10E-03
60	GO:0010188: response to microbial phytotoxin	1.10E-03
61	GO:0010197: polar nucleus fusion	1.13E-03
62	GO:0006886: intracellular protein transport	1.30E-03
63	GO:0046283: anthocyanin-containing compound metabolic process	1.40E-03
64	GO:0031365: N-terminal protein amino acid modification	1.40E-03
65	GO:0016554: cytidine to uridine editing	1.72E-03
66	GO:0060918: auxin transport	1.72E-03
67	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.72E-03
68	GO:0009228: thiamine biosynthetic process	1.72E-03
69	GO:0010942: positive regulation of cell death	1.72E-03
70	GO:0010405: arabinogalactan protein metabolic process	1.72E-03
71	GO:0009615: response to virus	1.99E-03
72	GO:2000067: regulation of root morphogenesis	2.06E-03
73	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.06E-03
74	GO:0010555: response to mannitol	2.06E-03
75	GO:0043090: amino acid import	2.42E-03
76	GO:1900056: negative regulation of leaf senescence	2.42E-03
77	GO:0080186: developmental vegetative growth	2.42E-03
78	GO:0070370: cellular heat acclimation	2.42E-03
79	GO:0031540: regulation of anthocyanin biosynthetic process	2.80E-03
80	GO:0006102: isocitrate metabolic process	2.80E-03
81	GO:0007186: G-protein coupled receptor signaling pathway	3.21E-03
82	GO:0010120: camalexin biosynthetic process	3.21E-03
83	GO:0010204: defense response signaling pathway, resistance gene-independent	3.21E-03
84	GO:0043562: cellular response to nitrogen levels	3.21E-03
85	GO:0045087: innate immune response	3.27E-03
86	GO:0006631: fatty acid metabolic process	3.88E-03
87	GO:0042542: response to hydrogen peroxide	4.04E-03
88	GO:0010205: photoinhibition	4.06E-03
89	GO:0048268: clathrin coat assembly	4.06E-03
90	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.06E-03
91	GO:0051707: response to other organism	4.21E-03
92	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.52E-03
93	GO:0006032: chitin catabolic process	4.52E-03
94	GO:0015031: protein transport	4.78E-03
95	GO:0000272: polysaccharide catabolic process	4.99E-03
96	GO:0009750: response to fructose	4.99E-03
97	GO:0031347: regulation of defense response	5.09E-03
98	GO:0080167: response to karrikin	5.15E-03
99	GO:0015706: nitrate transport	5.48E-03
100	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	5.48E-03
101	GO:0034605: cellular response to heat	6.50E-03
102	GO:0042343: indole glucosinolate metabolic process	7.04E-03
103	GO:0010167: response to nitrate	7.04E-03
104	GO:0046688: response to copper ion	7.04E-03
105	GO:0010053: root epidermal cell differentiation	7.04E-03
106	GO:0009626: plant-type hypersensitive response	7.13E-03
107	GO:0009553: embryo sac development	7.82E-03
108	GO:0000027: ribosomal large subunit assembly	8.16E-03
109	GO:0006487: protein N-linked glycosylation	8.16E-03
110	GO:0009651: response to salt stress	8.69E-03
111	GO:0006825: copper ion transport	8.74E-03
112	GO:0016998: cell wall macromolecule catabolic process	9.34E-03
113	GO:0098542: defense response to other organism	9.34E-03
114	GO:0071456: cellular response to hypoxia	9.96E-03
115	GO:0019748: secondary metabolic process	9.96E-03
116	GO:0010091: trichome branching	1.12E-02
117	GO:0009737: response to abscisic acid	1.17E-02
118	GO:0009790: embryo development	1.18E-02
119	GO:0042147: retrograde transport, endosome to Golgi	1.19E-02
120	GO:0006979: response to oxidative stress	1.20E-02
121	GO:0042631: cellular response to water deprivation	1.25E-02
122	GO:0042391: regulation of membrane potential	1.25E-02
123	GO:0010051: xylem and phloem pattern formation	1.25E-02
124	GO:0009960: endosperm development	1.32E-02
125	GO:0006662: glycerol ether metabolic process	1.32E-02
126	GO:0009646: response to absence of light	1.39E-02
127	GO:0006623: protein targeting to vacuole	1.46E-02
128	GO:0009749: response to glucose	1.46E-02
129	GO:0080156: mitochondrial mRNA modification	1.54E-02
130	GO:0002229: defense response to oomycetes	1.54E-02
131	GO:0051607: defense response to virus	1.92E-02
132	GO:0042128: nitrate assimilation	2.16E-02
133	GO:0006970: response to osmotic stress	2.33E-02
134	GO:0008219: cell death	2.41E-02
135	GO:0006457: protein folding	2.42E-02
136	GO:0010119: regulation of stomatal movement	2.67E-02
137	GO:0009631: cold acclimation	2.67E-02
138	GO:0010043: response to zinc ion	2.67E-02
139	GO:0006865: amino acid transport	2.76E-02
140	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.78E-02
141	GO:0016192: vesicle-mediated transport	2.83E-02
142	GO:0046777: protein autophosphorylation	2.87E-02
143	GO:0044550: secondary metabolite biosynthetic process	2.92E-02
144	GO:0006099: tricarboxylic acid cycle	2.94E-02
145	GO:0034599: cellular response to oxidative stress	2.94E-02
146	GO:0006897: endocytosis	3.22E-02
147	GO:0009744: response to sucrose	3.42E-02
148	GO:0009644: response to high light intensity	3.61E-02
149	GO:0009636: response to toxic substance	3.71E-02
150	GO:0009965: leaf morphogenesis	3.71E-02
151	GO:0032259: methylation	3.79E-02
152	GO:0006855: drug transmembrane transport	3.81E-02
153	GO:0000165: MAPK cascade	3.91E-02
154	GO:0006364: rRNA processing	4.22E-02
155	GO:0006486: protein glycosylation	4.22E-02
156	GO:0010224: response to UV-B	4.33E-02
157	GO:0009909: regulation of flower development	4.54E-02
158	GO:0048367: shoot system development	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0004164: diphthine synthase activity	0.00E+00
2	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
3	GO:0005046: KDEL sequence binding	0.00E+00
4	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
5	GO:0005524: ATP binding	9.58E-08
6	GO:0016301: kinase activity	3.04E-06
7	GO:0005516: calmodulin binding	1.17E-05
8	GO:0004674: protein serine/threonine kinase activity	1.22E-05
9	GO:0047631: ADP-ribose diphosphatase activity	3.14E-05
10	GO:0000210: NAD+ diphosphatase activity	4.69E-05
11	GO:0102391: decanoate--CoA ligase activity	6.56E-05
12	GO:0004467: long-chain fatty acid-CoA ligase activity	8.77E-05
13	GO:0004672: protein kinase activity	1.04E-04
14	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.13E-04
15	GO:0080042: ADP-glucose pyrophosphohydrolase activity	1.56E-04
16	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	1.56E-04
17	GO:0004871: signal transducer activity	2.41E-04
18	GO:0004713: protein tyrosine kinase activity	2.46E-04
19	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.13E-04
20	GO:0050897: cobalt ion binding	3.23E-04
21	GO:0017110: nucleoside-diphosphatase activity	3.55E-04
22	GO:0019172: glyoxalase III activity	3.55E-04
23	GO:0004338: glucan exo-1,3-beta-glucosidase activity	3.55E-04
24	GO:0080041: ADP-ribose pyrophosphohydrolase activity	3.55E-04
25	GO:0005388: calcium-transporting ATPase activity	3.74E-04
26	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.07E-04
27	GO:0004364: glutathione transferase activity	4.79E-04
28	GO:0016531: copper chaperone activity	5.82E-04
29	GO:0004148: dihydrolipoyl dehydrogenase activity	5.82E-04
30	GO:0004557: alpha-galactosidase activity	5.82E-04
31	GO:0031683: G-protein beta/gamma-subunit complex binding	5.82E-04
32	GO:0052692: raffinose alpha-galactosidase activity	5.82E-04
33	GO:0001664: G-protein coupled receptor binding	5.82E-04
34	GO:0051287: NAD binding	6.43E-04
35	GO:0033612: receptor serine/threonine kinase binding	7.05E-04
36	GO:0035529: NADH pyrophosphatase activity	8.33E-04
37	GO:0004449: isocitrate dehydrogenase (NAD+) activity	8.33E-04
38	GO:0003756: protein disulfide isomerase activity	9.07E-04
39	GO:0046923: ER retention sequence binding	1.10E-03
40	GO:0005515: protein binding	1.19E-03
41	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.40E-03
42	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.72E-03
43	GO:0030976: thiamine pyrophosphate binding	1.72E-03
44	GO:0004012: phospholipid-translocating ATPase activity	2.06E-03
45	GO:0004602: glutathione peroxidase activity	2.06E-03
46	GO:0008235: metalloexopeptidase activity	2.42E-03
47	GO:0008320: protein transmembrane transporter activity	2.42E-03
48	GO:0043295: glutathione binding	2.42E-03
49	GO:0004708: MAP kinase kinase activity	2.80E-03
50	GO:0015112: nitrate transmembrane transporter activity	4.06E-03
51	GO:0004568: chitinase activity	4.52E-03
52	GO:0005545: 1-phosphatidylinositol binding	4.52E-03
53	GO:0004177: aminopeptidase activity	4.99E-03
54	GO:0008559: xenobiotic-transporting ATPase activity	4.99E-03
55	GO:0008378: galactosyltransferase activity	5.48E-03
56	GO:0016298: lipase activity	5.86E-03
57	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5.98E-03
58	GO:0005262: calcium channel activity	5.98E-03
59	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.50E-03
60	GO:0030553: cGMP binding	7.04E-03
61	GO:0008061: chitin binding	7.04E-03
62	GO:0003712: transcription cofactor activity	7.04E-03
63	GO:0004190: aspartic-type endopeptidase activity	7.04E-03
64	GO:0030552: cAMP binding	7.04E-03
65	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	7.15E-03
66	GO:0003954: NADH dehydrogenase activity	8.16E-03
67	GO:0005528: FK506 binding	8.16E-03
68	GO:0005216: ion channel activity	8.74E-03
69	GO:0016758: transferase activity, transferring hexosyl groups	9.83E-03
70	GO:0008810: cellulase activity	1.06E-02
71	GO:0047134: protein-disulfide reductase activity	1.19E-02
72	GO:0008565: protein transporter activity	1.21E-02
73	GO:0030551: cyclic nucleotide binding	1.25E-02
74	GO:0005249: voltage-gated potassium channel activity	1.25E-02
75	GO:0004527: exonuclease activity	1.32E-02
76	GO:0003713: transcription coactivator activity	1.32E-02
77	GO:0030276: clathrin binding	1.32E-02
78	GO:0004791: thioredoxin-disulfide reductase activity	1.39E-02
79	GO:0004872: receptor activity	1.46E-02
80	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.68E-02
81	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.84E-02
82	GO:0051213: dioxygenase activity	1.99E-02
83	GO:0008168: methyltransferase activity	2.09E-02
84	GO:0000287: magnesium ion binding	2.13E-02
85	GO:0030247: polysaccharide binding	2.24E-02
86	GO:0004683: calmodulin-dependent protein kinase activity	2.24E-02
87	GO:0015238: drug transmembrane transporter activity	2.50E-02
88	GO:0030246: carbohydrate binding	2.55E-02
89	GO:0004222: metalloendopeptidase activity	2.58E-02
90	GO:0004497: monooxygenase activity	2.69E-02
91	GO:0005507: copper ion binding	2.73E-02
92	GO:0019825: oxygen binding	2.73E-02
93	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.85E-02
94	GO:0003746: translation elongation factor activity	2.85E-02
95	GO:0052689: carboxylic ester hydrolase activity	2.97E-02
96	GO:0005525: GTP binding	3.27E-02
97	GO:0015293: symporter activity	3.71E-02
98	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.81E-02
99	GO:0005509: calcium ion binding	3.82E-02
100	GO:0003924: GTPase activity	3.96E-02
101	GO:0005506: iron ion binding	4.14E-02
102	GO:0015171: amino acid transmembrane transporter activity	4.54E-02
103	GO:0031625: ubiquitin protein ligase binding	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.36E-10
2	GO:0005783: endoplasmic reticulum	3.74E-07
3	GO:0005801: cis-Golgi network	6.56E-05
4	GO:0005788: endoplasmic reticulum lumen	1.99E-04
5	GO:0031304: intrinsic component of mitochondrial inner membrane	3.55E-04
6	GO:0070545: PeBoW complex	3.55E-04
7	GO:0030134: ER to Golgi transport vesicle	3.55E-04
8	GO:0005901: caveola	3.55E-04
9	GO:0005795: Golgi stack	4.74E-04
10	GO:0046861: glyoxysomal membrane	5.82E-04
11	GO:0005774: vacuolar membrane	9.69E-04
12	GO:0005834: heterotrimeric G-protein complex	9.78E-04
13	GO:0009898: cytoplasmic side of plasma membrane	1.10E-03
14	GO:0008250: oligosaccharyltransferase complex	1.40E-03
15	GO:0016021: integral component of membrane	2.39E-03
16	GO:0005887: integral component of plasma membrane	2.71E-03
17	GO:0009514: glyoxysome	3.21E-03
18	GO:0048046: apoplast	3.38E-03
19	GO:0005794: Golgi apparatus	3.62E-03
20	GO:0031090: organelle membrane	3.63E-03
21	GO:0017119: Golgi transport complex	4.52E-03
22	GO:0031012: extracellular matrix	5.98E-03
23	GO:0005758: mitochondrial intermembrane space	8.16E-03
24	GO:0005905: clathrin-coated pit	9.34E-03
25	GO:0005622: intracellular	9.75E-03
26	GO:0030136: clathrin-coated vesicle	1.19E-02
27	GO:0009505: plant-type cell wall	1.67E-02
28	GO:0046658: anchored component of plasma membrane	1.85E-02
29	GO:0005777: peroxisome	2.09E-02
30	GO:0005789: endoplasmic reticulum membrane	2.24E-02
31	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.38E-02
32	GO:0000151: ubiquitin ligase complex	2.41E-02
33	GO:0000325: plant-type vacuole	2.67E-02
34	GO:0005802: trans-Golgi network	3.16E-02
35	GO:0043231: intracellular membrane-bounded organelle	4.36E-02
36	GO:0005747: mitochondrial respiratory chain complex I	4.86E-02