Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G28950

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000013: regulation of arginine biosynthetic process via ornithine0.00E+00
2GO:0042371: vitamin K biosynthetic process0.00E+00
3GO:1905499: trichome papilla formation0.00E+00
4GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
5GO:0042304: regulation of fatty acid biosynthetic process0.00E+00
6GO:0006223: uracil salvage0.00E+00
7GO:0033494: ferulate metabolic process0.00E+00
8GO:0015805: S-adenosyl-L-methionine transport0.00E+00
9GO:0010394: homogalacturonan metabolic process0.00E+00
10GO:0042407: cristae formation0.00E+00
11GO:0042493: response to drug0.00E+00
12GO:0006412: translation7.55E-11
13GO:0042254: ribosome biogenesis1.09E-08
14GO:0032544: plastid translation4.93E-08
15GO:0006633: fatty acid biosynthetic process4.49E-07
16GO:0045490: pectin catabolic process6.26E-07
17GO:0071258: cellular response to gravity2.23E-06
18GO:0015976: carbon utilization3.41E-05
19GO:0006085: acetyl-CoA biosynthetic process3.41E-05
20GO:0006183: GTP biosynthetic process3.41E-05
21GO:0010025: wax biosynthetic process4.66E-05
22GO:0009735: response to cytokinin8.00E-05
23GO:0009411: response to UV9.76E-05
24GO:0042372: phylloquinone biosynthetic process1.11E-04
25GO:0000413: protein peptidyl-prolyl isomerization1.40E-04
26GO:0045488: pectin metabolic process2.18E-04
27GO:0010729: positive regulation of hydrogen peroxide biosynthetic process2.18E-04
28GO:0060627: regulation of vesicle-mediated transport2.18E-04
29GO:0010442: guard cell morphogenesis2.18E-04
30GO:0046520: sphingoid biosynthetic process2.18E-04
31GO:0042547: cell wall modification involved in multidimensional cell growth2.18E-04
32GO:0010411: xyloglucan metabolic process4.29E-04
33GO:0052541: plant-type cell wall cellulose metabolic process4.86E-04
34GO:0006695: cholesterol biosynthetic process4.86E-04
35GO:0006423: cysteinyl-tRNA aminoacylation4.86E-04
36GO:0001736: establishment of planar polarity4.86E-04
37GO:0042742: defense response to bacterium5.71E-04
38GO:0010143: cutin biosynthetic process6.66E-04
39GO:0006629: lipid metabolic process7.70E-04
40GO:0045793: positive regulation of cell size7.90E-04
41GO:2001295: malonyl-CoA biosynthetic process7.90E-04
42GO:0006065: UDP-glucuronate biosynthetic process7.90E-04
43GO:0015840: urea transport7.90E-04
44GO:0006833: water transport8.29E-04
45GO:0042546: cell wall biogenesis9.53E-04
46GO:0051085: chaperone mediated protein folding requiring cofactor1.13E-03
47GO:0051639: actin filament network formation1.13E-03
48GO:0009650: UV protection1.13E-03
49GO:0006241: CTP biosynthetic process1.13E-03
50GO:0043481: anthocyanin accumulation in tissues in response to UV light1.13E-03
51GO:0046739: transport of virus in multicellular host1.13E-03
52GO:0006165: nucleoside diphosphate phosphorylation1.13E-03
53GO:0006228: UTP biosynthetic process1.13E-03
54GO:0006986: response to unfolded protein1.13E-03
55GO:0055070: copper ion homeostasis1.13E-03
56GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.13E-03
57GO:0010037: response to carbon dioxide1.50E-03
58GO:0006808: regulation of nitrogen utilization1.50E-03
59GO:0051764: actin crosslink formation1.50E-03
60GO:0051322: anaphase1.50E-03
61GO:2000122: negative regulation of stomatal complex development1.50E-03
62GO:0044206: UMP salvage1.50E-03
63GO:0000226: microtubule cytoskeleton organization1.66E-03
64GO:0042335: cuticle development1.66E-03
65GO:0006665: sphingolipid metabolic process1.91E-03
66GO:0032543: mitochondrial translation1.91E-03
67GO:0048359: mucilage metabolic process involved in seed coat development1.91E-03
68GO:0010236: plastoquinone biosynthetic process1.91E-03
69GO:0043097: pyrimidine nucleoside salvage1.91E-03
70GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.04E-03
71GO:0032502: developmental process2.35E-03
72GO:0042549: photosystem II stabilization2.35E-03
73GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.35E-03
74GO:0006796: phosphate-containing compound metabolic process2.35E-03
75GO:0009117: nucleotide metabolic process2.35E-03
76GO:0006206: pyrimidine nucleobase metabolic process2.35E-03
77GO:0009854: oxidative photosynthetic carbon pathway2.83E-03
78GO:0010555: response to mannitol2.83E-03
79GO:0009955: adaxial/abaxial pattern specification2.83E-03
80GO:0009612: response to mechanical stimulus2.83E-03
81GO:0017148: negative regulation of translation2.83E-03
82GO:0006694: steroid biosynthetic process2.83E-03
83GO:1901259: chloroplast rRNA processing2.83E-03
84GO:0009610: response to symbiotic fungus3.33E-03
85GO:0045995: regulation of embryonic development3.33E-03
86GO:0048528: post-embryonic root development3.33E-03
87GO:0009772: photosynthetic electron transport in photosystem II3.33E-03
88GO:0030497: fatty acid elongation3.33E-03
89GO:0019745: pentacyclic triterpenoid biosynthetic process3.33E-03
90GO:0009645: response to low light intensity stimulus3.33E-03
91GO:0009409: response to cold3.75E-03
92GO:0009642: response to light intensity3.86E-03
93GO:0042255: ribosome assembly3.86E-03
94GO:0006353: DNA-templated transcription, termination3.86E-03
95GO:0009817: defense response to fungus, incompatible interaction4.12E-03
96GO:0009808: lignin metabolic process4.42E-03
97GO:0009932: cell tip growth4.42E-03
98GO:0010497: plasmodesmata-mediated intercellular transport4.42E-03
99GO:0006526: arginine biosynthetic process4.42E-03
100GO:0007568: aging4.76E-03
101GO:0015780: nucleotide-sugar transport5.00E-03
102GO:0045337: farnesyl diphosphate biosynthetic process5.00E-03
103GO:0033384: geranyl diphosphate biosynthetic process5.00E-03
104GO:0043067: regulation of programmed cell death5.62E-03
105GO:0042761: very long-chain fatty acid biosynthetic process5.62E-03
106GO:0006631: fatty acid metabolic process6.20E-03
107GO:0043069: negative regulation of programmed cell death6.25E-03
108GO:0048829: root cap development6.25E-03
109GO:0009826: unidimensional cell growth6.81E-03
110GO:0048765: root hair cell differentiation6.91E-03
111GO:0010015: root morphogenesis6.91E-03
112GO:0000038: very long-chain fatty acid metabolic process6.91E-03
113GO:0018119: peptidyl-cysteine S-nitrosylation6.91E-03
114GO:0009658: chloroplast organization7.15E-03
115GO:0016024: CDP-diacylglycerol biosynthetic process7.60E-03
116GO:0055114: oxidation-reduction process7.82E-03
117GO:0009718: anthocyanin-containing compound biosynthetic process8.30E-03
118GO:0009725: response to hormone8.30E-03
119GO:0006006: glucose metabolic process8.30E-03
120GO:0006807: nitrogen compound metabolic process8.30E-03
121GO:0010207: photosystem II assembly9.03E-03
122GO:0019253: reductive pentose-phosphate cycle9.03E-03
123GO:0046688: response to copper ion9.79E-03
124GO:0006071: glycerol metabolic process1.06E-02
125GO:0019762: glucosinolate catabolic process1.06E-02
126GO:0006636: unsaturated fatty acid biosynthetic process1.06E-02
127GO:0019344: cysteine biosynthetic process1.14E-02
128GO:0009116: nucleoside metabolic process1.14E-02
129GO:0000027: ribosomal large subunit assembly1.14E-02
130GO:0051017: actin filament bundle assembly1.14E-02
131GO:0045454: cell redox homeostasis1.18E-02
132GO:0009740: gibberellic acid mediated signaling pathway1.22E-02
133GO:0010026: trichome differentiation1.22E-02
134GO:0007017: microtubule-based process1.22E-02
135GO:0006457: protein folding1.24E-02
136GO:0003333: amino acid transmembrane transport1.30E-02
137GO:0009814: defense response, incompatible interaction1.39E-02
138GO:0040007: growth1.48E-02
139GO:0016042: lipid catabolic process1.49E-02
140GO:0010091: trichome branching1.57E-02
141GO:0006284: base-excision repair1.57E-02
142GO:0016117: carotenoid biosynthetic process1.66E-02
143GO:0008033: tRNA processing1.75E-02
144GO:0034220: ion transmembrane transport1.75E-02
145GO:0009741: response to brassinosteroid1.85E-02
146GO:0009958: positive gravitropism1.85E-02
147GO:0006520: cellular amino acid metabolic process1.85E-02
148GO:0045489: pectin biosynthetic process1.85E-02
149GO:0010197: polar nucleus fusion1.85E-02
150GO:0007018: microtubule-based movement1.95E-02
151GO:0019252: starch biosynthetic process2.05E-02
152GO:0016132: brassinosteroid biosynthetic process2.15E-02
153GO:0002229: defense response to oomycetes2.15E-02
154GO:0009630: gravitropism2.25E-02
155GO:0010583: response to cyclopentenone2.25E-02
156GO:0009734: auxin-activated signaling pathway2.38E-02
157GO:0071555: cell wall organization2.41E-02
158GO:0009739: response to gibberellin2.51E-02
159GO:0000910: cytokinesis2.68E-02
160GO:0009911: positive regulation of flower development2.79E-02
161GO:0010027: thylakoid membrane organization2.79E-02
162GO:0009627: systemic acquired resistance3.02E-02
163GO:0015995: chlorophyll biosynthetic process3.14E-02
164GO:0009416: response to light stimulus3.17E-02
165GO:0016311: dephosphorylation3.25E-02
166GO:0009813: flavonoid biosynthetic process3.49E-02
167GO:0010311: lateral root formation3.49E-02
168GO:0009834: plant-type secondary cell wall biogenesis3.62E-02
169GO:0010119: regulation of stomatal movement3.74E-02
170GO:0006865: amino acid transport3.86E-02
171GO:0009853: photorespiration3.99E-02
172GO:0080167: response to karrikin4.30E-02
173GO:0030001: metal ion transport4.38E-02
174GO:0006839: mitochondrial transport4.38E-02
175GO:0005975: carbohydrate metabolic process4.43E-02
176GO:0042542: response to hydrogen peroxide4.65E-02
177GO:0009926: auxin polar transport4.78E-02
178GO:0009744: response to sucrose4.78E-02
179GO:0008283: cell proliferation4.78E-02
180GO:0009640: photomorphogenesis4.78E-02
181GO:0015979: photosynthesis4.89E-02
RankGO TermAdjusted P value
1GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
2GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
3GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
4GO:0050614: delta24-sterol reductase activity0.00E+00
5GO:0010307: acetylglutamate kinase regulator activity0.00E+00
6GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
7GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
8GO:0008887: glycerate kinase activity0.00E+00
9GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
10GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
11GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
12GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
13GO:0102245: lupan-3beta,20-diol synthase activity0.00E+00
14GO:0003735: structural constituent of ribosome1.50E-14
15GO:0019843: rRNA binding2.99E-13
16GO:0030570: pectate lyase activity1.02E-09
17GO:0016829: lyase activity2.65E-07
18GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity2.23E-06
19GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor8.14E-06
20GO:0003878: ATP citrate synthase activity1.87E-05
21GO:0009922: fatty acid elongase activity5.47E-05
22GO:0016462: pyrophosphatase activity8.04E-05
23GO:0051920: peroxiredoxin activity1.11E-04
24GO:0016209: antioxidant activity1.88E-04
25GO:0016762: xyloglucan:xyloglucosyl transferase activity2.10E-04
26GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity2.18E-04
27GO:0000170: sphingosine hydroxylase activity2.18E-04
28GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.18E-04
29GO:0004560: alpha-L-fucosidase activity2.18E-04
30GO:0080132: fatty acid alpha-hydroxylase activity2.18E-04
31GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.18E-04
32GO:0015200: methylammonium transmembrane transporter activity2.18E-04
33GO:0016788: hydrolase activity, acting on ester bonds2.65E-04
34GO:0016798: hydrolase activity, acting on glycosyl bonds4.29E-04
35GO:0052689: carboxylic ester hydrolase activity4.60E-04
36GO:0042389: omega-3 fatty acid desaturase activity4.86E-04
37GO:0003938: IMP dehydrogenase activity4.86E-04
38GO:0004817: cysteine-tRNA ligase activity4.86E-04
39GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity4.86E-04
40GO:0042284: sphingolipid delta-4 desaturase activity4.86E-04
41GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.86E-04
42GO:0004089: carbonate dehydratase activity5.92E-04
43GO:0003979: UDP-glucose 6-dehydrogenase activity7.90E-04
44GO:0042300: beta-amyrin synthase activity7.90E-04
45GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity7.90E-04
46GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity7.90E-04
47GO:0005504: fatty acid binding7.90E-04
48GO:0050734: hydroxycinnamoyltransferase activity7.90E-04
49GO:0004148: dihydrolipoyl dehydrogenase activity7.90E-04
50GO:0004075: biotin carboxylase activity7.90E-04
51GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds8.86E-04
52GO:0005507: copper ion binding1.03E-03
53GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.10E-03
54GO:0008097: 5S rRNA binding1.13E-03
55GO:0035529: NADH pyrophosphatase activity1.13E-03
56GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.13E-03
57GO:0004550: nucleoside diphosphate kinase activity1.13E-03
58GO:0042299: lupeol synthase activity1.13E-03
59GO:0051287: NAD binding1.15E-03
60GO:0015204: urea transmembrane transporter activity1.50E-03
61GO:0004659: prenyltransferase activity1.50E-03
62GO:0004845: uracil phosphoribosyltransferase activity1.50E-03
63GO:0010011: auxin binding1.50E-03
64GO:0016836: hydro-lyase activity1.50E-03
65GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.50E-03
66GO:0045430: chalcone isomerase activity1.50E-03
67GO:0010328: auxin influx transmembrane transporter activity1.50E-03
68GO:0003989: acetyl-CoA carboxylase activity1.91E-03
69GO:0008725: DNA-3-methyladenine glycosylase activity1.91E-03
70GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.35E-03
71GO:0008519: ammonium transmembrane transporter activity2.35E-03
72GO:0016208: AMP binding2.35E-03
73GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.35E-03
74GO:0016722: oxidoreductase activity, oxidizing metal ions2.82E-03
75GO:0005200: structural constituent of cytoskeleton2.82E-03
76GO:0004849: uridine kinase activity2.83E-03
77GO:0015250: water channel activity3.17E-03
78GO:0004427: inorganic diphosphatase activity3.33E-03
79GO:0008017: microtubule binding4.35E-03
80GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.42E-03
81GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors5.00E-03
82GO:0004337: geranyltranstransferase activity5.00E-03
83GO:0008889: glycerophosphodiester phosphodiesterase activity5.00E-03
84GO:0047617: acyl-CoA hydrolase activity5.62E-03
85GO:0004161: dimethylallyltranstransferase activity6.91E-03
86GO:0008266: poly(U) RNA binding9.03E-03
87GO:0003777: microtubule motor activity1.01E-02
88GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.06E-02
89GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.06E-02
90GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.06E-02
91GO:0051087: chaperone binding1.22E-02
92GO:0016746: transferase activity, transferring acyl groups1.33E-02
93GO:0046872: metal ion binding1.39E-02
94GO:0003727: single-stranded RNA binding1.57E-02
95GO:0008514: organic anion transmembrane transporter activity1.57E-02
96GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity1.85E-02
97GO:0008080: N-acetyltransferase activity1.85E-02
98GO:0051015: actin filament binding2.36E-02
99GO:0016791: phosphatase activity2.46E-02
100GO:0102483: scopolin beta-glucosidase activity3.14E-02
101GO:0000287: magnesium ion binding3.41E-02
102GO:0004601: peroxidase activity3.47E-02
103GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.62E-02
104GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.74E-02
105GO:0003746: translation elongation factor activity3.99E-02
106GO:0003993: acid phosphatase activity4.12E-02
107GO:0008422: beta-glucosidase activity4.25E-02
108GO:0050661: NADP binding4.38E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009570: chloroplast stroma2.88E-35
4GO:0009941: chloroplast envelope4.51E-24
5GO:0009507: chloroplast6.24E-19
6GO:0009579: thylakoid8.57E-17
7GO:0005840: ribosome1.78E-13
8GO:0048046: apoplast2.84E-10
9GO:0009534: chloroplast thylakoid3.03E-08
10GO:0009535: chloroplast thylakoid membrane5.14E-08
11GO:0009505: plant-type cell wall1.41E-07
12GO:0031977: thylakoid lumen1.98E-07
13GO:0016020: membrane7.35E-07
14GO:0009506: plasmodesma3.56E-06
15GO:0005618: cell wall8.44E-06
16GO:0009346: citrate lyase complex1.87E-05
17GO:0000311: plastid large ribosomal subunit2.13E-05
18GO:0046658: anchored component of plasma membrane2.15E-05
19GO:0009543: chloroplast thylakoid lumen5.25E-05
20GO:0009547: plastid ribosome2.18E-04
21GO:0009923: fatty acid elongase complex2.18E-04
22GO:0009536: plastid2.41E-04
23GO:0045298: tubulin complex2.82E-04
24GO:0010319: stromule2.97E-04
25GO:0031225: anchored component of membrane3.14E-04
26GO:0005874: microtubule3.60E-04
27GO:0005576: extracellular region5.90E-04
28GO:0015935: small ribosomal subunit1.10E-03
29GO:0032432: actin filament bundle1.13E-03
30GO:0055035: plastid thylakoid membrane1.91E-03
31GO:0072686: mitotic spindle1.91E-03
32GO:0022626: cytosolic ribosome1.94E-03
33GO:0009986: cell surface3.33E-03
34GO:0042807: central vacuole3.33E-03
35GO:0005886: plasma membrane3.45E-03
36GO:0000326: protein storage vacuole4.42E-03
37GO:0005763: mitochondrial small ribosomal subunit5.00E-03
38GO:0008180: COP9 signalosome5.00E-03
39GO:0000922: spindle pole5.00E-03
40GO:0005819: spindle5.70E-03
41GO:0005768: endosome6.00E-03
42GO:0055028: cortical microtubule6.25E-03
43GO:0005884: actin filament6.91E-03
44GO:0009574: preprophase band8.30E-03
45GO:0030095: chloroplast photosystem II9.03E-03
46GO:0000312: plastid small ribosomal subunit9.03E-03
47GO:0031969: chloroplast membrane9.40E-03
48GO:0022625: cytosolic large ribosomal subunit1.00E-02
49GO:0005875: microtubule associated complex1.06E-02
50GO:0009654: photosystem II oxygen evolving complex1.22E-02
51GO:0042651: thylakoid membrane1.22E-02
52GO:0005789: endoplasmic reticulum membrane1.50E-02
53GO:0005783: endoplasmic reticulum1.56E-02
54GO:0005871: kinesin complex1.66E-02
55GO:0005802: trans-Golgi network1.70E-02
56GO:0019898: extrinsic component of membrane2.05E-02
57GO:0016592: mediator complex2.25E-02
58GO:0005774: vacuolar membrane2.30E-02
59GO:0005778: peroxisomal membrane2.57E-02
60GO:0019005: SCF ubiquitin ligase complex3.37E-02
61GO:0015934: large ribosomal subunit3.74E-02
62GO:0005777: peroxisome3.76E-02
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Gene type



Gene DE type