co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051553: flavone biosynthetic process	0.00E+00
2	GO:0032499: detection of peptidoglycan	0.00E+00
3	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
4	GO:0072660: maintenance of protein location in plasma membrane	0.00E+00
5	GO:0071327: cellular response to trehalose stimulus	0.00E+00
6	GO:0051245: negative regulation of cellular defense response	0.00E+00
7	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
8	GO:1900367: positive regulation of defense response to insect	0.00E+00
9	GO:0010401: pectic galactan metabolic process	0.00E+00
10	GO:0042742: defense response to bacterium	7.62E-12
11	GO:0009617: response to bacterium	3.35E-10
12	GO:0080142: regulation of salicylic acid biosynthetic process	2.58E-07
13	GO:0043069: negative regulation of programmed cell death	2.75E-07
14	GO:2000031: regulation of salicylic acid mediated signaling pathway	7.15E-06
15	GO:0006468: protein phosphorylation	8.29E-06
16	GO:0006517: protein deglycosylation	1.03E-05
17	GO:0052544: defense response by callose deposition in cell wall	2.28E-05
18	GO:0006612: protein targeting to membrane	2.34E-05
19	GO:0009627: systemic acquired resistance	4.23E-05
20	GO:0060548: negative regulation of cell death	4.26E-05
21	GO:0010363: regulation of plant-type hypersensitive response	4.26E-05
22	GO:0071219: cellular response to molecule of bacterial origin	4.26E-05
23	GO:0070588: calcium ion transmembrane transport	5.22E-05
24	GO:0000162: tryptophan biosynthetic process	6.20E-05
25	GO:0009863: salicylic acid mediated signaling pathway	7.28E-05
26	GO:0009759: indole glucosinolate biosynthetic process	9.94E-05
27	GO:0031348: negative regulation of defense response	1.13E-04
28	GO:0050832: defense response to fungus	1.13E-04
29	GO:0046470: phosphatidylcholine metabolic process	1.80E-04
30	GO:0061025: membrane fusion	2.24E-04
31	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.28E-04
32	GO:0032491: detection of molecule of fungal origin	2.48E-04
33	GO:0009968: negative regulation of signal transduction	2.48E-04
34	GO:0010266: response to vitamin B1	2.48E-04
35	GO:0016337: single organismal cell-cell adhesion	2.48E-04
36	GO:0048482: plant ovule morphogenesis	2.48E-04
37	GO:0043547: positive regulation of GTPase activity	2.48E-04
38	GO:0009700: indole phytoalexin biosynthetic process	2.48E-04
39	GO:0055081: anion homeostasis	2.48E-04
40	GO:0046938: phytochelatin biosynthetic process	2.48E-04
41	GO:0043985: histone H4-R3 methylation	2.48E-04
42	GO:1901183: positive regulation of camalexin biosynthetic process	2.48E-04
43	GO:0006643: membrane lipid metabolic process	2.48E-04
44	GO:0006952: defense response	3.08E-04
45	GO:0010112: regulation of systemic acquired resistance	3.41E-04
46	GO:1900426: positive regulation of defense response to bacterium	4.05E-04
47	GO:0009816: defense response to bacterium, incompatible interaction	4.75E-04
48	GO:0009682: induced systemic resistance	5.47E-04
49	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.49E-04
50	GO:0015012: heparan sulfate proteoglycan biosynthetic process	5.49E-04
51	GO:0002221: pattern recognition receptor signaling pathway	5.49E-04
52	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	5.49E-04
53	GO:0080185: effector dependent induction by symbiont of host immune response	5.49E-04
54	GO:0010618: aerenchyma formation	5.49E-04
55	GO:0006024: glycosaminoglycan biosynthetic process	5.49E-04
56	GO:0052541: plant-type cell wall cellulose metabolic process	5.49E-04
57	GO:0006212: uracil catabolic process	5.49E-04
58	GO:0019483: beta-alanine biosynthetic process	5.49E-04
59	GO:0031349: positive regulation of defense response	5.49E-04
60	GO:0046777: protein autophosphorylation	6.08E-04
61	GO:0010105: negative regulation of ethylene-activated signaling pathway	6.25E-04
62	GO:0002213: defense response to insect	6.25E-04
63	GO:0009867: jasmonic acid mediated signaling pathway	8.35E-04
64	GO:1900140: regulation of seedling development	8.92E-04
65	GO:0072661: protein targeting to plasma membrane	8.92E-04
66	GO:0046621: negative regulation of organ growth	8.92E-04
67	GO:0048281: inflorescence morphogenesis	8.92E-04
68	GO:0042343: indole glucosinolate metabolic process	8.92E-04
69	GO:0042344: indole glucosinolate catabolic process	8.92E-04
70	GO:0010150: leaf senescence	9.61E-04
71	GO:0006887: exocytosis	1.03E-03
72	GO:0006470: protein dephosphorylation	1.17E-03
73	GO:0071323: cellular response to chitin	1.27E-03
74	GO:0006515: misfolded or incompletely synthesized protein catabolic process	1.27E-03
75	GO:0000187: activation of MAPK activity	1.27E-03
76	GO:0019438: aromatic compound biosynthetic process	1.27E-03
77	GO:0048194: Golgi vesicle budding	1.27E-03
78	GO:0002239: response to oomycetes	1.27E-03
79	GO:0010148: transpiration	1.27E-03
80	GO:0006516: glycoprotein catabolic process	1.27E-03
81	GO:0048530: fruit morphogenesis	1.27E-03
82	GO:0015700: arsenite transport	1.27E-03
83	GO:0048278: vesicle docking	1.32E-03
84	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.44E-03
85	GO:0009625: response to insect	1.57E-03
86	GO:0010188: response to microbial phytotoxin	1.70E-03
87	GO:0009306: protein secretion	1.70E-03
88	GO:0044804: nucleophagy	1.70E-03
89	GO:0048830: adventitious root development	1.70E-03
90	GO:0006085: acetyl-CoA biosynthetic process	1.70E-03
91	GO:0010600: regulation of auxin biosynthetic process	1.70E-03
92	GO:0031365: N-terminal protein amino acid modification	2.17E-03
93	GO:0006665: sphingolipid metabolic process	2.17E-03
94	GO:0010225: response to UV-C	2.17E-03
95	GO:0000422: mitophagy	2.17E-03
96	GO:0030041: actin filament polymerization	2.17E-03
97	GO:0009626: plant-type hypersensitive response	2.23E-03
98	GO:0009620: response to fungus	2.32E-03
99	GO:0002229: defense response to oomycetes	2.64E-03
100	GO:0010942: positive regulation of cell death	2.67E-03
101	GO:0048317: seed morphogenesis	2.67E-03
102	GO:0000045: autophagosome assembly	2.67E-03
103	GO:0060918: auxin transport	2.67E-03
104	GO:0030163: protein catabolic process	3.01E-03
105	GO:0006694: steroid biosynthetic process	3.21E-03
106	GO:0010199: organ boundary specification between lateral organs and the meristem	3.21E-03
107	GO:0010310: regulation of hydrogen peroxide metabolic process	3.21E-03
108	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.21E-03
109	GO:0000911: cytokinesis by cell plate formation	3.21E-03
110	GO:0009612: response to mechanical stimulus	3.21E-03
111	GO:0006904: vesicle docking involved in exocytosis	3.40E-03
112	GO:0010044: response to aluminum ion	3.79E-03
113	GO:0010161: red light signaling pathway	3.79E-03
114	GO:0071446: cellular response to salicylic acid stimulus	3.79E-03
115	GO:0006906: vesicle fusion	4.26E-03
116	GO:0006875: cellular metal ion homeostasis	4.39E-03
117	GO:0032875: regulation of DNA endoreduplication	4.39E-03
118	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.39E-03
119	GO:0030162: regulation of proteolysis	4.39E-03
120	GO:0006491: N-glycan processing	4.39E-03
121	GO:0009737: response to abscisic acid	4.52E-03
122	GO:0008219: cell death	4.97E-03
123	GO:0009817: defense response to fungus, incompatible interaction	4.97E-03
124	GO:0043562: cellular response to nitrogen levels	5.03E-03
125	GO:0006002: fructose 6-phosphate metabolic process	5.03E-03
126	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	5.03E-03
127	GO:0010120: camalexin biosynthetic process	5.03E-03
128	GO:0009813: flavonoid biosynthetic process	5.22E-03
129	GO:0009407: toxin catabolic process	5.48E-03
130	GO:0046685: response to arsenic-containing substance	5.70E-03
131	GO:0010119: regulation of stomatal movement	5.75E-03
132	GO:0007166: cell surface receptor signaling pathway	6.18E-03
133	GO:0045087: innate immune response	6.30E-03
134	GO:0048268: clathrin coat assembly	6.40E-03
135	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	6.40E-03
136	GO:0009641: shade avoidance	7.12E-03
137	GO:0006897: endocytosis	7.49E-03
138	GO:0030148: sphingolipid biosynthetic process	7.88E-03
139	GO:0009684: indoleacetic acid biosynthetic process	7.88E-03
140	GO:0051707: response to other organism	8.13E-03
141	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	8.66E-03
142	GO:0000266: mitochondrial fission	8.66E-03
143	GO:0009636: response to toxic substance	9.14E-03
144	GO:0006807: nitrogen compound metabolic process	9.47E-03
145	GO:0009414: response to water deprivation	9.62E-03
146	GO:0006979: response to oxidative stress	1.02E-02
147	GO:0009738: abscisic acid-activated signaling pathway	1.06E-02
148	GO:0010030: positive regulation of seed germination	1.12E-02
149	GO:0080188: RNA-directed DNA methylation	1.12E-02
150	GO:0035556: intracellular signal transduction	1.21E-02
151	GO:0010200: response to chitin	1.25E-02
152	GO:0007165: signal transduction	1.26E-02
153	GO:0016192: vesicle-mediated transport	1.27E-02
154	GO:0080147: root hair cell development	1.30E-02
155	GO:0016569: covalent chromatin modification	1.47E-02
156	GO:0015031: protein transport	1.52E-02
157	GO:0006886: intracellular protein transport	1.56E-02
158	GO:0071456: cellular response to hypoxia	1.59E-02
159	GO:0009814: defense response, incompatible interaction	1.59E-02
160	GO:0018105: peptidyl-serine phosphorylation	1.61E-02
161	GO:0006012: galactose metabolic process	1.69E-02
162	GO:0042127: regulation of cell proliferation	1.79E-02
163	GO:0016042: lipid catabolic process	1.89E-02
164	GO:0042147: retrograde transport, endosome to Golgi	1.90E-02
165	GO:0009751: response to salicylic acid	1.92E-02
166	GO:0000413: protein peptidyl-prolyl isomerization	2.01E-02
167	GO:0010051: xylem and phloem pattern formation	2.01E-02
168	GO:0010087: phloem or xylem histogenesis	2.01E-02
169	GO:0010197: polar nucleus fusion	2.12E-02
170	GO:0010182: sugar mediated signaling pathway	2.12E-02
171	GO:0008360: regulation of cell shape	2.12E-02
172	GO:0009851: auxin biosynthetic process	2.34E-02
173	GO:0006623: protein targeting to vacuole	2.34E-02
174	GO:0009749: response to glucose	2.34E-02
175	GO:0006891: intra-Golgi vesicle-mediated transport	2.46E-02
176	GO:0010193: response to ozone	2.46E-02
177	GO:0006508: proteolysis	2.63E-02
178	GO:0019760: glucosinolate metabolic process	2.82E-02
179	GO:0000910: cytokinesis	3.07E-02
180	GO:0001666: response to hypoxia	3.19E-02
181	GO:0010311: lateral root formation	4.00E-02
182	GO:0006499: N-terminal protein myristoylation	4.14E-02
183	GO:0009631: cold acclimation	4.28E-02
184	GO:0007049: cell cycle	4.66E-02
185	GO:0006099: tricarboxylic acid cycle	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:2001080: chitosan binding	0.00E+00
2	GO:0033749: histone demethylase activity (H4-R3 specific)	0.00E+00
3	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
4	GO:0033759: flavone synthase activity	0.00E+00
5	GO:0003837: beta-ureidopropionase activity	0.00E+00
6	GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity	0.00E+00
7	GO:0033746: histone demethylase activity (H3-R2 specific)	0.00E+00
8	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
9	GO:0016301: kinase activity	9.60E-07
10	GO:0005524: ATP binding	8.07E-06
11	GO:0005516: calmodulin binding	1.69E-05
12	GO:0005388: calcium-transporting ATPase activity	3.56E-05
13	GO:0004674: protein serine/threonine kinase activity	5.80E-05
14	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.35E-04
15	GO:0004656: procollagen-proline 4-dioxygenase activity	1.37E-04
16	GO:0004012: phospholipid-translocating ATPase activity	1.37E-04
17	GO:2001147: camalexin binding	2.48E-04
18	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.48E-04
19	GO:2001227: quercitrin binding	2.48E-04
20	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.48E-04
21	GO:1901149: salicylic acid binding	2.48E-04
22	GO:0015085: calcium ion transmembrane transporter activity	2.48E-04
23	GO:0046870: cadmium ion binding	2.48E-04
24	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	2.48E-04
25	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	2.48E-04
26	GO:0071992: phytochelatin transmembrane transporter activity	2.48E-04
27	GO:0004630: phospholipase D activity	2.82E-04
28	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.82E-04
29	GO:0038199: ethylene receptor activity	5.49E-04
30	GO:0045140: inositol phosphoceramide synthase activity	5.49E-04
31	GO:0004672: protein kinase activity	6.19E-04
32	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.09E-04
33	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	8.35E-04
34	GO:0004190: aspartic-type endopeptidase activity	8.92E-04
35	GO:0004049: anthranilate synthase activity	8.92E-04
36	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	8.92E-04
37	GO:0004148: dihydrolipoyl dehydrogenase activity	8.92E-04
38	GO:0031418: L-ascorbic acid binding	1.09E-03
39	GO:0005484: SNAP receptor activity	1.14E-03
40	GO:0051740: ethylene binding	1.27E-03
41	GO:0003878: ATP citrate synthase activity	1.27E-03
42	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.27E-03
43	GO:0033612: receptor serine/threonine kinase binding	1.32E-03
44	GO:0004930: G-protein coupled receptor activity	1.70E-03
45	GO:0019199: transmembrane receptor protein kinase activity	1.70E-03
46	GO:0043495: protein anchor	1.70E-03
47	GO:0045431: flavonol synthase activity	2.17E-03
48	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	2.17E-03
49	GO:0005509: calcium ion binding	2.56E-03
50	GO:0005506: iron ion binding	2.90E-03
51	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.40E-03
52	GO:0046872: metal ion binding	3.47E-03
53	GO:0043295: glutathione binding	3.79E-03
54	GO:0008235: metalloexopeptidase activity	3.79E-03
55	GO:0003872: 6-phosphofructokinase activity	3.79E-03
56	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.81E-03
57	GO:0004722: protein serine/threonine phosphatase activity	3.90E-03
58	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.26E-03
59	GO:0004708: MAP kinase kinase activity	4.39E-03
60	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.39E-03
61	GO:0004034: aldose 1-epimerase activity	4.39E-03
62	GO:0005515: protein binding	4.42E-03
63	GO:0004683: calmodulin-dependent protein kinase activity	4.49E-03
64	GO:0004806: triglyceride lipase activity	4.49E-03
65	GO:0003843: 1,3-beta-D-glucan synthase activity	5.03E-03
66	GO:0050897: cobalt ion binding	5.75E-03
67	GO:0000149: SNARE binding	6.88E-03
68	GO:0004673: protein histidine kinase activity	7.12E-03
69	GO:0008171: O-methyltransferase activity	7.12E-03
70	GO:0005545: 1-phosphatidylinositol binding	7.12E-03
71	GO:0004364: glutathione transferase activity	7.80E-03
72	GO:0004177: aminopeptidase activity	7.88E-03
73	GO:0008559: xenobiotic-transporting ATPase activity	7.88E-03
74	GO:0015095: magnesium ion transmembrane transporter activity	9.47E-03
75	GO:0000155: phosphorelay sensor kinase activity	9.47E-03
76	GO:0009982: pseudouridine synthase activity	9.47E-03
77	GO:0008061: chitin binding	1.12E-02
78	GO:0003712: transcription cofactor activity	1.12E-02
79	GO:0016298: lipase activity	1.14E-02
80	GO:0003954: NADH dehydrogenase activity	1.30E-02
81	GO:0043130: ubiquitin binding	1.30E-02
82	GO:0035251: UDP-glucosyltransferase activity	1.49E-02
83	GO:0016746: transferase activity, transferring acyl groups	1.61E-02
84	GO:0008810: cellulase activity	1.69E-02
85	GO:0019825: oxygen binding	1.90E-02
86	GO:0005507: copper ion binding	1.90E-02
87	GO:0030276: clathrin binding	2.12E-02
88	GO:0008080: N-acetyltransferase activity	2.12E-02
89	GO:0016853: isomerase activity	2.23E-02
90	GO:0004872: receptor activity	2.34E-02
91	GO:0008565: protein transporter activity	2.35E-02
92	GO:0030247: polysaccharide binding	3.59E-02
93	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.59E-02
94	GO:0004721: phosphoprotein phosphatase activity	3.59E-02
95	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.72E-02
96	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.86E-02
97	GO:0005096: GTPase activator activity	4.00E-02
98	GO:0000287: magnesium ion binding	4.11E-02
99	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.71E-02
100	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.08E-12
2	GO:0016021: integral component of membrane	6.00E-08
3	GO:0009504: cell plate	2.47E-04
4	GO:0005911: cell-cell junction	2.48E-04
5	GO:0045252: oxoglutarate dehydrogenase complex	2.48E-04
6	GO:0005950: anthranilate synthase complex	5.49E-04
7	GO:0031304: intrinsic component of mitochondrial inner membrane	5.49E-04
8	GO:0005901: caveola	5.49E-04
9	GO:0070062: extracellular exosome	1.27E-03
10	GO:0009346: citrate lyase complex	1.27E-03
11	GO:0005905: clathrin-coated pit	1.32E-03
12	GO:0000407: pre-autophagosomal structure	1.70E-03
13	GO:0009898: cytoplasmic side of plasma membrane	1.70E-03
14	GO:0005945: 6-phosphofructokinase complex	2.17E-03
15	GO:0000164: protein phosphatase type 1 complex	2.17E-03
16	GO:0019898: extrinsic component of membrane	2.47E-03
17	GO:0030131: clathrin adaptor complex	4.39E-03
18	GO:0000148: 1,3-beta-D-glucan synthase complex	5.03E-03
19	GO:0005737: cytoplasm	6.26E-03
20	GO:0030665: clathrin-coated vesicle membrane	6.40E-03
21	GO:0005802: trans-Golgi network	6.67E-03
22	GO:0005789: endoplasmic reticulum membrane	6.89E-03
23	GO:0017119: Golgi transport complex	7.12E-03
24	GO:0005887: integral component of plasma membrane	7.42E-03
25	GO:0031201: SNARE complex	7.49E-03
26	GO:0009506: plasmodesma	1.05E-02
27	GO:0005769: early endosome	1.21E-02
28	GO:0030136: clathrin-coated vesicle	1.90E-02
29	GO:0005829: cytosol	1.98E-02
30	GO:0009524: phragmoplast	2.07E-02
31	GO:0016020: membrane	2.54E-02
32	GO:0000145: exocyst	2.58E-02
33	GO:0005774: vacuolar membrane	3.28E-02
34	GO:0019005: SCF ubiquitin ligase complex	3.86E-02
35	GO:0000325: plant-type vacuole	4.28E-02
36	GO:0000139: Golgi membrane	4.93E-02