Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G27130

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0035674: tricarboxylic acid transmembrane transport0.00E+00
3GO:0090071: negative regulation of ribosome biogenesis0.00E+00
4GO:0090470: shoot organ boundary specification0.00E+00
5GO:0061635: regulation of protein complex stability0.00E+00
6GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
7GO:0015670: carbon dioxide transport0.00E+00
8GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
9GO:0006399: tRNA metabolic process0.00E+00
10GO:0015979: photosynthesis1.05E-12
11GO:0010027: thylakoid membrane organization6.85E-10
12GO:0032544: plastid translation6.08E-09
13GO:0009773: photosynthetic electron transport in photosystem I4.97E-08
14GO:0010196: nonphotochemical quenching1.89E-07
15GO:0009735: response to cytokinin2.09E-07
16GO:1902326: positive regulation of chlorophyll biosynthetic process9.09E-06
17GO:0009658: chloroplast organization1.06E-05
18GO:0018298: protein-chromophore linkage2.60E-05
19GO:0090391: granum assembly3.12E-05
20GO:0006412: translation1.30E-04
21GO:0010207: photosystem II assembly1.63E-04
22GO:0055085: transmembrane transport1.98E-04
23GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.58E-04
24GO:1902458: positive regulation of stomatal opening4.53E-04
25GO:0006835: dicarboxylic acid transport4.53E-04
26GO:0071588: hydrogen peroxide mediated signaling pathway4.53E-04
27GO:0060627: regulation of vesicle-mediated transport4.53E-04
28GO:0043686: co-translational protein modification4.53E-04
29GO:0006810: transport6.99E-04
30GO:0006633: fatty acid biosynthetic process7.00E-04
31GO:0071555: cell wall organization7.23E-04
32GO:0010205: photoinhibition9.56E-04
33GO:0006729: tetrahydrobiopterin biosynthetic process9.79E-04
34GO:1903426: regulation of reactive oxygen species biosynthetic process9.79E-04
35GO:0030388: fructose 1,6-bisphosphate metabolic process9.79E-04
36GO:0010275: NAD(P)H dehydrogenase complex assembly9.79E-04
37GO:0043255: regulation of carbohydrate biosynthetic process9.79E-04
38GO:0010115: regulation of abscisic acid biosynthetic process9.79E-04
39GO:0045037: protein import into chloroplast stroma1.47E-03
40GO:1902448: positive regulation of shade avoidance1.59E-03
41GO:0006000: fructose metabolic process1.59E-03
42GO:0009062: fatty acid catabolic process1.59E-03
43GO:0015675: nickel cation transport1.59E-03
44GO:0051604: protein maturation1.59E-03
45GO:0071492: cellular response to UV-A1.59E-03
46GO:0015995: chlorophyll biosynthetic process1.65E-03
47GO:0030036: actin cytoskeleton organization1.67E-03
48GO:0042254: ribosome biogenesis1.84E-03
49GO:0009825: multidimensional cell growth2.11E-03
50GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.31E-03
51GO:0010371: regulation of gibberellin biosynthetic process2.31E-03
52GO:0071484: cellular response to light intensity2.31E-03
53GO:0051639: actin filament network formation2.31E-03
54GO:0080170: hydrogen peroxide transmembrane transport2.31E-03
55GO:1901332: negative regulation of lateral root development2.31E-03
56GO:0051016: barbed-end actin filament capping2.31E-03
57GO:2001141: regulation of RNA biosynthetic process2.31E-03
58GO:0006833: water transport2.35E-03
59GO:0006636: unsaturated fatty acid biosynthetic process2.35E-03
60GO:0009768: photosynthesis, light harvesting in photosystem I2.88E-03
61GO:0071486: cellular response to high light intensity3.10E-03
62GO:0051764: actin crosslink formation3.10E-03
63GO:0009765: photosynthesis, light harvesting3.10E-03
64GO:0031122: cytoplasmic microtubule organization3.10E-03
65GO:0006183: GTP biosynthetic process3.10E-03
66GO:0045727: positive regulation of translation3.10E-03
67GO:0015994: chlorophyll metabolic process3.10E-03
68GO:0010021: amylopectin biosynthetic process3.10E-03
69GO:0031408: oxylipin biosynthetic process3.17E-03
70GO:0016998: cell wall macromolecule catabolic process3.17E-03
71GO:0030245: cellulose catabolic process3.47E-03
72GO:0007623: circadian rhythm3.73E-03
73GO:0009644: response to high light intensity3.90E-03
74GO:0006461: protein complex assembly3.98E-03
75GO:0006564: L-serine biosynthetic process3.98E-03
76GO:0016120: carotene biosynthetic process3.98E-03
77GO:0010236: plastoquinone biosynthetic process3.98E-03
78GO:0045038: protein import into chloroplast thylakoid membrane3.98E-03
79GO:0031365: N-terminal protein amino acid modification3.98E-03
80GO:0042538: hyperosmotic salinity response4.72E-03
81GO:0042335: cuticle development4.82E-03
82GO:0034220: ion transmembrane transport4.82E-03
83GO:0042549: photosystem II stabilization4.92E-03
84GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.92E-03
85GO:0006655: phosphatidylglycerol biosynthetic process4.92E-03
86GO:0010190: cytochrome b6f complex assembly4.92E-03
87GO:0016554: cytidine to uridine editing4.92E-03
88GO:0010337: regulation of salicylic acid metabolic process4.92E-03
89GO:0006561: proline biosynthetic process4.92E-03
90GO:0010182: sugar mediated signaling pathway5.20E-03
91GO:0009955: adaxial/abaxial pattern specification5.94E-03
92GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.94E-03
93GO:0017148: negative regulation of translation5.94E-03
94GO:0006694: steroid biosynthetic process5.94E-03
95GO:1901259: chloroplast rRNA processing5.94E-03
96GO:0010189: vitamin E biosynthetic process5.94E-03
97GO:0010019: chloroplast-nucleus signaling pathway5.94E-03
98GO:0009395: phospholipid catabolic process7.03E-03
99GO:0009772: photosynthetic electron transport in photosystem II7.03E-03
100GO:0051693: actin filament capping7.03E-03
101GO:1900057: positive regulation of leaf senescence7.03E-03
102GO:0009645: response to low light intensity stimulus7.03E-03
103GO:0006400: tRNA modification7.03E-03
104GO:0016559: peroxisome fission8.18E-03
105GO:0048564: photosystem I assembly8.18E-03
106GO:0008610: lipid biosynthetic process8.18E-03
107GO:0009642: response to light intensity8.18E-03
108GO:0006605: protein targeting8.18E-03
109GO:0042255: ribosome assembly8.18E-03
110GO:2000070: regulation of response to water deprivation8.18E-03
111GO:0006875: cellular metal ion homeostasis8.18E-03
112GO:0045010: actin nucleation8.18E-03
113GO:0031540: regulation of anthocyanin biosynthetic process8.18E-03
114GO:0009808: lignin metabolic process9.38E-03
115GO:0006002: fructose 6-phosphate metabolic process9.38E-03
116GO:0071482: cellular response to light stimulus9.38E-03
117GO:0015996: chlorophyll catabolic process9.38E-03
118GO:0007186: G-protein coupled receptor signaling pathway9.38E-03
119GO:0009657: plastid organization9.38E-03
120GO:0080167: response to karrikin1.01E-02
121GO:0010206: photosystem II repair1.07E-02
122GO:0009245: lipid A biosynthetic process1.07E-02
123GO:0000902: cell morphogenesis1.07E-02
124GO:0009409: response to cold1.19E-02
125GO:1900865: chloroplast RNA modification1.20E-02
126GO:0030244: cellulose biosynthetic process1.22E-02
127GO:0009817: defense response to fungus, incompatible interaction1.22E-02
128GO:0042744: hydrogen peroxide catabolic process1.28E-02
129GO:0045454: cell redox homeostasis1.33E-02
130GO:0006032: chitin catabolic process1.34E-02
131GO:0019538: protein metabolic process1.34E-02
132GO:0009688: abscisic acid biosynthetic process1.34E-02
133GO:0009416: response to light stimulus1.40E-02
134GO:0009073: aromatic amino acid family biosynthetic process1.48E-02
135GO:0043085: positive regulation of catalytic activity1.48E-02
136GO:0008285: negative regulation of cell proliferation1.48E-02
137GO:0006352: DNA-templated transcription, initiation1.48E-02
138GO:0009750: response to fructose1.48E-02
139GO:0006415: translational termination1.48E-02
140GO:0006869: lipid transport1.52E-02
141GO:0009637: response to blue light1.55E-02
142GO:0034599: cellular response to oxidative stress1.62E-02
143GO:0016024: CDP-diacylglycerol biosynthetic process1.63E-02
144GO:0055114: oxidation-reduction process1.70E-02
145GO:0009718: anthocyanin-containing compound biosynthetic process1.79E-02
146GO:0009725: response to hormone1.79E-02
147GO:0006094: gluconeogenesis1.79E-02
148GO:0005986: sucrose biosynthetic process1.79E-02
149GO:0010102: lateral root morphogenesis1.79E-02
150GO:0010229: inflorescence development1.79E-02
151GO:0048467: gynoecium development1.95E-02
152GO:0010020: chloroplast fission1.95E-02
153GO:0007015: actin filament organization1.95E-02
154GO:0019253: reductive pentose-phosphate cycle1.95E-02
155GO:0010114: response to red light2.00E-02
156GO:0010053: root epidermal cell differentiation2.12E-02
157GO:0010167: response to nitrate2.12E-02
158GO:0005985: sucrose metabolic process2.12E-02
159GO:0010025: wax biosynthetic process2.29E-02
160GO:0042023: DNA endoreduplication2.29E-02
161GO:0009833: plant-type primary cell wall biogenesis2.29E-02
162GO:0000027: ribosomal large subunit assembly2.46E-02
163GO:0051017: actin filament bundle assembly2.46E-02
164GO:0010073: meristem maintenance2.64E-02
165GO:0009695: jasmonic acid biosynthetic process2.64E-02
166GO:0007017: microtubule-based process2.64E-02
167GO:0009809: lignin biosynthetic process2.70E-02
168GO:0006364: rRNA processing2.70E-02
169GO:0061077: chaperone-mediated protein folding2.82E-02
170GO:0016226: iron-sulfur cluster assembly3.01E-02
171GO:0035428: hexose transmembrane transport3.01E-02
172GO:0010227: floral organ abscission3.20E-02
173GO:0006096: glycolytic process3.20E-02
174GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.20E-02
175GO:0009294: DNA mediated transformation3.20E-02
176GO:0009306: protein secretion3.40E-02
177GO:0005975: carbohydrate metabolic process3.78E-02
178GO:0080022: primary root development3.81E-02
179GO:0000413: protein peptidyl-prolyl isomerization3.81E-02
180GO:0046323: glucose import4.01E-02
181GO:0006662: glycerol ether metabolic process4.01E-02
182GO:0015986: ATP synthesis coupled proton transport4.23E-02
183GO:0009414: response to water deprivation4.40E-02
184GO:0019252: starch biosynthetic process4.44E-02
185GO:0016132: brassinosteroid biosynthetic process4.66E-02
186GO:0000302: response to reactive oxygen species4.66E-02
187GO:0071554: cell wall organization or biogenesis4.66E-02
188GO:0006635: fatty acid beta-oxidation4.66E-02
189GO:0032502: developmental process4.88E-02
RankGO TermAdjusted P value
1GO:0015142: tricarboxylic acid transmembrane transporter activity0.00E+00
2GO:0051738: xanthophyll binding0.00E+00
3GO:0050614: delta24-sterol reductase activity0.00E+00
4GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
5GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
6GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
7GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
8GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
9GO:0010301: xanthoxin dehydrogenase activity0.00E+00
10GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
11GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
12GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
13GO:0019843: rRNA binding5.00E-12
14GO:0016168: chlorophyll binding2.84E-08
15GO:0022891: substrate-specific transmembrane transporter activity1.23E-06
16GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity9.09E-06
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.05E-05
18GO:0005528: FK506 binding1.45E-05
19GO:0043023: ribosomal large subunit binding6.74E-05
20GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.18E-04
21GO:0043495: protein anchor1.18E-04
22GO:0051920: peroxiredoxin activity3.46E-04
23GO:0019899: enzyme binding4.45E-04
24GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity4.53E-04
25GO:0008809: carnitine racemase activity4.53E-04
26GO:0050139: nicotinate-N-glucosyltransferase activity4.53E-04
27GO:0047259: glucomannan 4-beta-mannosyltransferase activity4.53E-04
28GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.53E-04
29GO:0008568: microtubule-severing ATPase activity4.53E-04
30GO:0004321: fatty-acyl-CoA synthase activity4.53E-04
31GO:0005080: protein kinase C binding4.53E-04
32GO:0015088: copper uptake transmembrane transporter activity4.53E-04
33GO:0042586: peptide deformylase activity4.53E-04
34GO:0045485: omega-6 fatty acid desaturase activity4.53E-04
35GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.53E-04
36GO:0016209: antioxidant activity5.55E-04
37GO:0003735: structural constituent of ribosome6.06E-04
38GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds7.70E-04
39GO:0004617: phosphoglycerate dehydrogenase activity9.79E-04
40GO:0003938: IMP dehydrogenase activity9.79E-04
41GO:0033201: alpha-1,4-glucan synthase activity9.79E-04
42GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.79E-04
43GO:0008805: carbon-monoxide oxygenase activity9.79E-04
44GO:0015099: nickel cation transmembrane transporter activity9.79E-04
45GO:0008967: phosphoglycolate phosphatase activity9.79E-04
46GO:0047746: chlorophyllase activity9.79E-04
47GO:0016491: oxidoreductase activity1.47E-03
48GO:0005310: dicarboxylic acid transmembrane transporter activity1.59E-03
49GO:0004373: glycogen (starch) synthase activity1.59E-03
50GO:0004601: peroxidase activity1.78E-03
51GO:0016788: hydrolase activity, acting on ester bonds1.84E-03
52GO:0008266: poly(U) RNA binding1.88E-03
53GO:0017077: oxidative phosphorylation uncoupler activity2.31E-03
54GO:0001872: (1->3)-beta-D-glucan binding2.31E-03
55GO:0016149: translation release factor activity, codon specific2.31E-03
56GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.31E-03
57GO:0016851: magnesium chelatase activity2.31E-03
58GO:0004165: dodecenoyl-CoA delta-isomerase activity2.31E-03
59GO:0031409: pigment binding2.35E-03
60GO:0001053: plastid sigma factor activity3.10E-03
61GO:0016836: hydro-lyase activity3.10E-03
62GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.10E-03
63GO:0004045: aminoacyl-tRNA hydrolase activity3.10E-03
64GO:0080032: methyl jasmonate esterase activity3.10E-03
65GO:0009011: starch synthase activity3.10E-03
66GO:0016987: sigma factor activity3.10E-03
67GO:0052793: pectin acetylesterase activity3.10E-03
68GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.10E-03
69GO:0008810: cellulase activity3.78E-03
70GO:0004040: amidase activity3.98E-03
71GO:0080030: methyl indole-3-acetate esterase activity4.92E-03
72GO:0031177: phosphopantetheine binding4.92E-03
73GO:0004130: cytochrome-c peroxidase activity4.92E-03
74GO:0016688: L-ascorbate peroxidase activity4.92E-03
75GO:0042802: identical protein binding5.38E-03
76GO:0051753: mannan synthase activity5.94E-03
77GO:0000035: acyl binding5.94E-03
78GO:0004620: phospholipase activity7.03E-03
79GO:0051015: actin filament binding7.33E-03
80GO:0016759: cellulose synthase activity7.80E-03
81GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process8.18E-03
82GO:0052747: sinapyl alcohol dehydrogenase activity8.18E-03
83GO:0004033: aldo-keto reductase (NADP) activity8.18E-03
84GO:0015250: water channel activity9.33E-03
85GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.38E-03
86GO:0003747: translation release factor activity1.07E-02
87GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors1.07E-02
88GO:0016207: 4-coumarate-CoA ligase activity1.07E-02
89GO:0030247: polysaccharide binding1.10E-02
90GO:0008236: serine-type peptidase activity1.16E-02
91GO:0052689: carboxylic ester hydrolase activity1.17E-02
92GO:0005381: iron ion transmembrane transporter activity1.20E-02
93GO:0004568: chitinase activity1.34E-02
94GO:0008047: enzyme activator activity1.34E-02
95GO:0047372: acylglycerol lipase activity1.48E-02
96GO:0003993: acid phosphatase activity1.62E-02
97GO:0008378: galactosyltransferase activity1.63E-02
98GO:0045551: cinnamyl-alcohol dehydrogenase activity1.63E-02
99GO:0031072: heat shock protein binding1.79E-02
100GO:0008081: phosphoric diester hydrolase activity1.79E-02
101GO:0004565: beta-galactosidase activity1.79E-02
102GO:0004022: alcohol dehydrogenase (NAD) activity1.79E-02
103GO:0003924: GTPase activity1.82E-02
104GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.95E-02
105GO:0005215: transporter activity2.10E-02
106GO:0008146: sulfotransferase activity2.12E-02
107GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.21E-02
108GO:0051536: iron-sulfur cluster binding2.46E-02
109GO:0043424: protein histidine kinase binding2.64E-02
110GO:0008289: lipid binding2.96E-02
111GO:0016787: hydrolase activity3.08E-02
112GO:0016760: cellulose synthase (UDP-forming) activity3.20E-02
113GO:0030570: pectate lyase activity3.20E-02
114GO:0003727: single-stranded RNA binding3.40E-02
115GO:0047134: protein-disulfide reductase activity3.60E-02
116GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.01E-02
117GO:0004791: thioredoxin-disulfide reductase activity4.23E-02
118GO:0005355: glucose transmembrane transporter activity4.23E-02
119GO:0050662: coenzyme binding4.23E-02
120GO:0004872: receptor activity4.44E-02
121GO:0048038: quinone binding4.66E-02
122GO:0016762: xyloglucan:xyloglucosyl transferase activity4.66E-02
RankGO TermAdjusted P value
1GO:0010240: plastid pyruvate dehydrogenase complex0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0009507: chloroplast1.79E-59
4GO:0009535: chloroplast thylakoid membrane2.39E-34
5GO:0009941: chloroplast envelope4.09E-29
6GO:0009570: chloroplast stroma2.50E-27
7GO:0009579: thylakoid3.13E-22
8GO:0009534: chloroplast thylakoid3.55E-22
9GO:0009543: chloroplast thylakoid lumen2.60E-16
10GO:0031977: thylakoid lumen1.56E-11
11GO:0009523: photosystem II1.53E-07
12GO:0009654: photosystem II oxygen evolving complex5.66E-07
13GO:0046658: anchored component of plasma membrane6.07E-06
14GO:0009533: chloroplast stromal thylakoid1.48E-05
15GO:0042651: thylakoid membrane1.79E-05
16GO:0016021: integral component of membrane1.79E-05
17GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.26E-05
18GO:0010287: plastoglobule6.44E-05
19GO:0005840: ribosome6.84E-05
20GO:0019898: extrinsic component of membrane7.87E-05
21GO:0031969: chloroplast membrane1.41E-04
22GO:0010319: stromule1.42E-04
23GO:0030095: chloroplast photosystem II1.63E-04
24GO:0009706: chloroplast inner membrane3.05E-04
25GO:0009782: photosystem I antenna complex4.53E-04
26GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.53E-04
27GO:0009547: plastid ribosome4.53E-04
28GO:0048046: apoplast6.03E-04
29GO:0005618: cell wall8.04E-04
30GO:0008290: F-actin capping protein complex9.79E-04
31GO:0016020: membrane1.20E-03
32GO:0009536: plastid1.22E-03
33GO:0005884: actin filament1.28E-03
34GO:0009528: plastid inner membrane1.59E-03
35GO:0010007: magnesium chelatase complex1.59E-03
36GO:0030076: light-harvesting complex2.11E-03
37GO:0015934: large ribosomal subunit2.27E-03
38GO:0015630: microtubule cytoskeleton2.31E-03
39GO:0032432: actin filament bundle2.31E-03
40GO:0009527: plastid outer membrane3.10E-03
41GO:0009526: plastid envelope3.10E-03
42GO:0009517: PSII associated light-harvesting complex II3.10E-03
43GO:0031897: Tic complex3.10E-03
44GO:0055035: plastid thylakoid membrane3.98E-03
45GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.92E-03
46GO:0031209: SCAR complex4.92E-03
47GO:0009501: amyloplast8.18E-03
48GO:0009539: photosystem II reaction center9.38E-03
49GO:0031225: anchored component of membrane1.05E-02
50GO:0005763: mitochondrial small ribosomal subunit1.07E-02
51GO:0008180: COP9 signalosome1.07E-02
52GO:0009707: chloroplast outer membrane1.22E-02
53GO:0000311: plastid large ribosomal subunit1.63E-02
54GO:0000312: plastid small ribosomal subunit1.95E-02
55GO:0015935: small ribosomal subunit2.82E-02
56GO:0009532: plastid stroma2.82E-02
57GO:0005886: plasma membrane4.15E-02
58GO:0009522: photosystem I4.23E-02
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Gene type



Gene DE type