co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G26930

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0034337: RNA folding	0.00E+00
3	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
7	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
8	GO:0090470: shoot organ boundary specification	0.00E+00
9	GO:0061635: regulation of protein complex stability	0.00E+00
10	GO:0016553: base conversion or substitution editing	0.00E+00
11	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
12	GO:0005996: monosaccharide metabolic process	0.00E+00
13	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
14	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
15	GO:0090042: tubulin deacetylation	0.00E+00
16	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
17	GO:0015979: photosynthesis	1.44E-18
18	GO:0010027: thylakoid membrane organization	2.77E-15
19	GO:0032544: plastid translation	1.26E-13
20	GO:0009773: photosynthetic electron transport in photosystem I	3.13E-12
21	GO:0006412: translation	1.62E-10
22	GO:0042254: ribosome biogenesis	2.93E-09
23	GO:0009735: response to cytokinin	7.69E-09
24	GO:0009658: chloroplast organization	3.89E-08
25	GO:0090391: granum assembly	6.71E-08
26	GO:0010196: nonphotochemical quenching	1.25E-07
27	GO:0015995: chlorophyll biosynthetic process	6.23E-07
28	GO:0010207: photosystem II assembly	4.77E-06
29	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.22E-06
30	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.22E-06
31	GO:0018298: protein-chromophore linkage	1.69E-05
32	GO:0006000: fructose metabolic process	2.51E-05
33	GO:0045727: positive regulation of translation	9.64E-05
34	GO:0032543: mitochondrial translation	1.50E-04
35	GO:0010236: plastoquinone biosynthetic process	1.50E-04
36	GO:0045038: protein import into chloroplast thylakoid membrane	1.50E-04
37	GO:1901259: chloroplast rRNA processing	2.88E-04
38	GO:0009772: photosynthetic electron transport in photosystem II	3.73E-04
39	GO:1902458: positive regulation of stomatal opening	4.02E-04
40	GO:0071588: hydrogen peroxide mediated signaling pathway	4.02E-04
41	GO:0043489: RNA stabilization	4.02E-04
42	GO:0000481: maturation of 5S rRNA	4.02E-04
43	GO:0042371: vitamin K biosynthetic process	4.02E-04
44	GO:0006002: fructose 6-phosphate metabolic process	5.69E-04
45	GO:0071482: cellular response to light stimulus	5.69E-04
46	GO:0010206: photosystem II repair	6.82E-04
47	GO:1900865: chloroplast RNA modification	8.05E-04
48	GO:0006729: tetrahydrobiopterin biosynthetic process	8.71E-04
49	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.71E-04
50	GO:0010270: photosystem II oxygen evolving complex assembly	8.71E-04
51	GO:0080005: photosystem stoichiometry adjustment	8.71E-04
52	GO:0034755: iron ion transmembrane transport	8.71E-04
53	GO:0006094: gluconeogenesis	1.40E-03
54	GO:0005986: sucrose biosynthetic process	1.40E-03
55	GO:1902448: positive regulation of shade avoidance	1.41E-03
56	GO:0006518: peptide metabolic process	1.41E-03
57	GO:0051604: protein maturation	1.41E-03
58	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.41E-03
59	GO:0019253: reductive pentose-phosphate cycle	1.57E-03
60	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.04E-03
61	GO:0010371: regulation of gibberellin biosynthetic process	2.04E-03
62	GO:0071484: cellular response to light intensity	2.04E-03
63	GO:0009152: purine ribonucleotide biosynthetic process	2.04E-03
64	GO:0046653: tetrahydrofolate metabolic process	2.04E-03
65	GO:0010731: protein glutathionylation	2.04E-03
66	GO:0006424: glutamyl-tRNA aminoacylation	2.04E-03
67	GO:1901332: negative regulation of lateral root development	2.04E-03
68	GO:2001141: regulation of RNA biosynthetic process	2.04E-03
69	GO:0006418: tRNA aminoacylation for protein translation	2.41E-03
70	GO:0009768: photosynthesis, light harvesting in photosystem I	2.41E-03
71	GO:0061077: chaperone-mediated protein folding	2.65E-03
72	GO:0009765: photosynthesis, light harvesting	2.74E-03
73	GO:0015994: chlorophyll metabolic process	2.74E-03
74	GO:0010021: amylopectin biosynthetic process	2.74E-03
75	GO:0009409: response to cold	2.86E-03
76	GO:0009306: protein secretion	3.44E-03
77	GO:0006810: transport	3.47E-03
78	GO:0031365: N-terminal protein amino acid modification	3.51E-03
79	GO:0006461: protein complex assembly	3.51E-03
80	GO:0006564: L-serine biosynthetic process	3.51E-03
81	GO:0009793: embryo development ending in seed dormancy	3.92E-03
82	GO:0006364: rRNA processing	4.10E-03
83	GO:0016554: cytidine to uridine editing	4.35E-03
84	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	4.35E-03
85	GO:0006828: manganese ion transport	4.35E-03
86	GO:0032973: amino acid export	4.35E-03
87	GO:0006014: D-ribose metabolic process	4.35E-03
88	GO:0055085: transmembrane transport	4.92E-03
89	GO:0019252: starch biosynthetic process	5.01E-03
90	GO:0006096: glycolytic process	5.08E-03
91	GO:0010019: chloroplast-nucleus signaling pathway	5.24E-03
92	GO:0009955: adaxial/abaxial pattern specification	5.24E-03
93	GO:0042372: phylloquinone biosynthetic process	5.24E-03
94	GO:0010189: vitamin E biosynthetic process	5.24E-03
95	GO:0009854: oxidative photosynthetic carbon pathway	5.24E-03
96	GO:0009395: phospholipid catabolic process	6.19E-03
97	GO:0043090: amino acid import	6.19E-03
98	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	6.19E-03
99	GO:0009645: response to low light intensity stimulus	6.19E-03
100	GO:0006400: tRNA modification	6.19E-03
101	GO:0010492: maintenance of shoot apical meristem identity	7.20E-03
102	GO:0048564: photosystem I assembly	7.20E-03
103	GO:0008610: lipid biosynthetic process	7.20E-03
104	GO:0006605: protein targeting	7.20E-03
105	GO:0032508: DNA duplex unwinding	7.20E-03
106	GO:2000070: regulation of response to water deprivation	7.20E-03
107	GO:0045010: actin nucleation	7.20E-03
108	GO:0017004: cytochrome complex assembly	8.26E-03
109	GO:0015996: chlorophyll catabolic process	8.26E-03
110	GO:0007186: G-protein coupled receptor signaling pathway	8.26E-03
111	GO:0009657: plastid organization	8.26E-03
112	GO:0080144: amino acid homeostasis	9.38E-03
113	GO:0048507: meristem development	9.38E-03
114	GO:0006754: ATP biosynthetic process	9.38E-03
115	GO:0010205: photoinhibition	1.06E-02
116	GO:0006779: porphyrin-containing compound biosynthetic process	1.06E-02
117	GO:0006782: protoporphyrinogen IX biosynthetic process	1.18E-02
118	GO:0009631: cold acclimation	1.18E-02
119	GO:0009637: response to blue light	1.29E-02
120	GO:0009853: photorespiration	1.29E-02
121	GO:0006816: calcium ion transport	1.30E-02
122	GO:0043085: positive regulation of catalytic activity	1.30E-02
123	GO:0008285: negative regulation of cell proliferation	1.30E-02
124	GO:0006879: cellular iron ion homeostasis	1.30E-02
125	GO:0006352: DNA-templated transcription, initiation	1.30E-02
126	GO:0006415: translational termination	1.30E-02
127	GO:0000272: polysaccharide catabolic process	1.30E-02
128	GO:0009750: response to fructose	1.30E-02
129	GO:0018119: peptidyl-cysteine S-nitrosylation	1.30E-02
130	GO:0009451: RNA modification	1.33E-02
131	GO:0034599: cellular response to oxidative stress	1.35E-02
132	GO:0005983: starch catabolic process	1.44E-02
133	GO:0045037: protein import into chloroplast stroma	1.44E-02
134	GO:0030036: actin cytoskeleton organization	1.57E-02
135	GO:0006006: glucose metabolic process	1.57E-02
136	GO:0008152: metabolic process	1.60E-02
137	GO:0010114: response to red light	1.67E-02
138	GO:0010020: chloroplast fission	1.71E-02
139	GO:0009644: response to high light intensity	1.81E-02
140	GO:0005985: sucrose metabolic process	1.86E-02
141	GO:0010025: wax biosynthetic process	2.01E-02
142	GO:0006636: unsaturated fatty acid biosynthetic process	2.01E-02
143	GO:0000027: ribosomal large subunit assembly	2.16E-02
144	GO:0010073: meristem maintenance	2.32E-02
145	GO:0016575: histone deacetylation	2.32E-02
146	GO:0016226: iron-sulfur cluster assembly	2.64E-02
147	GO:0035428: hexose transmembrane transport	2.64E-02
148	GO:0010227: floral organ abscission	2.81E-02
149	GO:0080167: response to karrikin	2.95E-02
150	GO:0009561: megagametogenesis	2.99E-02
151	GO:0042631: cellular response to water deprivation	3.34E-02
152	GO:0042335: cuticle development	3.34E-02
153	GO:0000413: protein peptidyl-prolyl isomerization	3.34E-02
154	GO:0010182: sugar mediated signaling pathway	3.53E-02
155	GO:0046323: glucose import	3.53E-02
156	GO:0006662: glycerol ether metabolic process	3.53E-02
157	GO:0045454: cell redox homeostasis	3.68E-02
158	GO:0015986: ATP synthesis coupled proton transport	3.71E-02
159	GO:0080156: mitochondrial mRNA modification	4.09E-02
160	GO:0000302: response to reactive oxygen species	4.09E-02
161	GO:0006508: proteolysis	4.38E-02
162	GO:0030163: protein catabolic process	4.49E-02
163	GO:0010090: trichome morphogenesis	4.49E-02
164	GO:0009790: embryo development	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0051738: xanthophyll binding	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
7	GO:0008887: glycerate kinase activity	0.00E+00
8	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
9	GO:0051721: protein phosphatase 2A binding	0.00E+00
10	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
11	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
12	GO:0042903: tubulin deacetylase activity	0.00E+00
13	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
14	GO:0043014: alpha-tubulin binding	0.00E+00
15	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
16	GO:0004823: leucine-tRNA ligase activity	0.00E+00
17	GO:0019843: rRNA binding	5.24E-20
18	GO:0003735: structural constituent of ribosome	7.06E-12
19	GO:0005528: FK506 binding	7.33E-11
20	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.39E-10
21	GO:0016168: chlorophyll binding	4.41E-07
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.22E-06
23	GO:0022891: substrate-specific transmembrane transporter activity	2.22E-05
24	GO:0002161: aminoacyl-tRNA editing activity	2.51E-05
25	GO:0016851: magnesium chelatase activity	5.48E-05
26	GO:0043495: protein anchor	9.64E-05
27	GO:0031072: heat shock protein binding	1.05E-04
28	GO:0008266: poly(U) RNA binding	1.26E-04
29	GO:0019899: enzyme binding	3.73E-04
30	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	4.02E-04
31	GO:0003867: 4-aminobutyrate transaminase activity	4.02E-04
32	GO:0005080: protein kinase C binding	4.02E-04
33	GO:0045485: omega-6 fatty acid desaturase activity	4.02E-04
34	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	4.02E-04
35	GO:0004033: aldo-keto reductase (NADP) activity	4.66E-04
36	GO:0047746: chlorophyllase activity	8.71E-04
37	GO:0010297: heteropolysaccharide binding	8.71E-04
38	GO:0004617: phosphoglycerate dehydrogenase activity	8.71E-04
39	GO:0033201: alpha-1,4-glucan synthase activity	8.71E-04
40	GO:0016630: protochlorophyllide reductase activity	8.71E-04
41	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	8.71E-04
42	GO:0008967: phosphoglycolate phosphatase activity	8.71E-04
43	GO:0008237: metallopeptidase activity	9.28E-04
44	GO:0005509: calcium ion binding	1.14E-03
45	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.41E-03
46	GO:0008864: formyltetrahydrofolate deformylase activity	1.41E-03
47	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.41E-03
48	GO:0004373: glycogen (starch) synthase activity	1.41E-03
49	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.41E-03
50	GO:0004222: metalloendopeptidase activity	1.70E-03
51	GO:0003723: RNA binding	1.80E-03
52	GO:0031409: pigment binding	1.97E-03
53	GO:0043023: ribosomal large subunit binding	2.04E-03
54	GO:0008097: 5S rRNA binding	2.04E-03
55	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	2.04E-03
56	GO:0048487: beta-tubulin binding	2.04E-03
57	GO:0016149: translation release factor activity, codon specific	2.04E-03
58	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	2.04E-03
59	GO:0004176: ATP-dependent peptidase activity	2.65E-03
60	GO:0004659: prenyltransferase activity	2.74E-03
61	GO:0001053: plastid sigma factor activity	2.74E-03
62	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.74E-03
63	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.74E-03
64	GO:0016987: sigma factor activity	2.74E-03
65	GO:0009011: starch synthase activity	2.74E-03
66	GO:0003959: NADPH dehydrogenase activity	3.51E-03
67	GO:0004040: amidase activity	3.51E-03
68	GO:0004812: aminoacyl-tRNA ligase activity	3.73E-03
69	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.08E-03
70	GO:0004130: cytochrome-c peroxidase activity	4.35E-03
71	GO:0016688: L-ascorbate peroxidase activity	4.35E-03
72	GO:0050662: coenzyme binding	4.67E-03
73	GO:0051920: peroxiredoxin activity	5.24E-03
74	GO:0004747: ribokinase activity	5.24E-03
75	GO:0008235: metalloexopeptidase activity	6.19E-03
76	GO:0004620: phospholipase activity	6.19E-03
77	GO:0051082: unfolded protein binding	6.44E-03
78	GO:0016209: antioxidant activity	7.20E-03
79	GO:0008312: 7S RNA binding	7.20E-03
80	GO:0052747: sinapyl alcohol dehydrogenase activity	7.20E-03
81	GO:0043022: ribosome binding	7.20E-03
82	GO:0008865: fructokinase activity	7.20E-03
83	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	8.26E-03
84	GO:0016787: hydrolase activity	8.41E-03
85	GO:0003747: translation release factor activity	9.38E-03
86	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	9.38E-03
87	GO:0008236: serine-type peptidase activity	9.66E-03
88	GO:0003729: mRNA binding	9.85E-03
89	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.02E-02
90	GO:0005381: iron ion transmembrane transporter activity	1.06E-02
91	GO:0005384: manganese ion transmembrane transporter activity	1.06E-02
92	GO:0030234: enzyme regulator activity	1.18E-02
93	GO:0008047: enzyme activator activity	1.18E-02
94	GO:0004177: aminopeptidase activity	1.30E-02
95	GO:0015386: potassium:proton antiporter activity	1.30E-02
96	GO:0000049: tRNA binding	1.44E-02
97	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.44E-02
98	GO:0003824: catalytic activity	1.46E-02
99	GO:0015095: magnesium ion transmembrane transporter activity	1.57E-02
100	GO:0009982: pseudouridine synthase activity	1.57E-02
101	GO:0004565: beta-galactosidase activity	1.57E-02
102	GO:0004022: alcohol dehydrogenase (NAD) activity	1.57E-02
103	GO:0042802: identical protein binding	1.76E-02
104	GO:0051287: NAD binding	2.02E-02
105	GO:0016491: oxidoreductase activity	2.07E-02
106	GO:0051536: iron-sulfur cluster binding	2.16E-02
107	GO:0004407: histone deacetylase activity	2.16E-02
108	GO:0015079: potassium ion transmembrane transporter activity	2.32E-02
109	GO:0016887: ATPase activity	2.66E-02
110	GO:0047134: protein-disulfide reductase activity	3.16E-02
111	GO:0008080: N-acetyltransferase activity	3.53E-02
112	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.53E-02
113	GO:0004791: thioredoxin-disulfide reductase activity	3.71E-02
114	GO:0005355: glucose transmembrane transporter activity	3.71E-02
115	GO:0048038: quinone binding	4.09E-02
116	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.49E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0009507: chloroplast	7.97E-122
5	GO:0009570: chloroplast stroma	5.45E-65
6	GO:0009535: chloroplast thylakoid membrane	2.73E-64
7	GO:0009941: chloroplast envelope	2.82E-57
8	GO:0009579: thylakoid	8.28E-39
9	GO:0009534: chloroplast thylakoid	2.20E-31
10	GO:0009543: chloroplast thylakoid lumen	4.17E-30
11	GO:0031977: thylakoid lumen	4.85E-22
12	GO:0005840: ribosome	1.10E-16
13	GO:0009654: photosystem II oxygen evolving complex	1.45E-12
14	GO:0019898: extrinsic component of membrane	4.60E-11
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.77E-09
16	GO:0030095: chloroplast photosystem II	9.89E-08
17	GO:0031969: chloroplast membrane	1.09E-07
18	GO:0042651: thylakoid membrane	3.49E-07
19	GO:0009523: photosystem II	2.73E-06
20	GO:0010287: plastoglobule	3.67E-06
21	GO:0009533: chloroplast stromal thylakoid	1.09E-05
22	GO:0010007: magnesium chelatase complex	2.51E-05
23	GO:0000311: plastid large ribosomal subunit	8.61E-05
24	GO:0009706: chloroplast inner membrane	2.16E-04
25	GO:0009547: plastid ribosome	4.02E-04
26	GO:0009782: photosystem I antenna complex	4.02E-04
27	GO:0080085: signal recognition particle, chloroplast targeting	8.71E-04
28	GO:0000427: plastid-encoded plastid RNA polymerase complex	8.71E-04
29	GO:0030093: chloroplast photosystem I	8.71E-04
30	GO:0010319: stromule	9.28E-04
31	GO:0032040: small-subunit processome	1.23E-03
32	GO:0009528: plastid inner membrane	1.41E-03
33	GO:0030076: light-harvesting complex	1.76E-03
34	GO:0015934: large ribosomal subunit	1.80E-03
35	GO:0009536: plastid	2.26E-03
36	GO:0015935: small ribosomal subunit	2.65E-03
37	GO:0009532: plastid stroma	2.65E-03
38	GO:0009527: plastid outer membrane	2.74E-03
39	GO:0009526: plastid envelope	2.74E-03
40	GO:0009517: PSII associated light-harvesting complex II	2.74E-03
41	GO:0009544: chloroplast ATP synthase complex	2.74E-03
42	GO:0055035: plastid thylakoid membrane	3.51E-03
43	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	4.35E-03
44	GO:0031209: SCAR complex	4.35E-03
45	GO:0016020: membrane	4.69E-03
46	GO:0016021: integral component of membrane	6.31E-03
47	GO:0009295: nucleoid	6.91E-03
48	GO:0009501: amyloplast	7.20E-03
49	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	8.26E-03
50	GO:0005763: mitochondrial small ribosomal subunit	9.38E-03
51	GO:0009508: plastid chromosome	1.57E-02
52	GO:0022626: cytosolic ribosome	3.04E-02
53	GO:0009522: photosystem I	3.71E-02
54	GO:0005778: peroxisomal membrane	4.90E-02