co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G26910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034337: RNA folding	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
6	GO:0045176: apical protein localization	0.00E+00
7	GO:0061635: regulation of protein complex stability	0.00E+00
8	GO:0016553: base conversion or substitution editing	0.00E+00
9	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
10	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
11	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
12	GO:0006399: tRNA metabolic process	0.00E+00
13	GO:0015979: photosynthesis	2.88E-10
14	GO:0009735: response to cytokinin	2.04E-07
15	GO:0032544: plastid translation	2.14E-07
16	GO:0015995: chlorophyll biosynthetic process	2.85E-07
17	GO:0006412: translation	6.25E-07
18	GO:0009773: photosynthetic electron transport in photosystem I	1.10E-06
19	GO:0010207: photosystem II assembly	2.76E-06
20	GO:0010027: thylakoid membrane organization	4.59E-06
21	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.21E-06
22	GO:0042254: ribosome biogenesis	2.37E-05
23	GO:0015994: chlorophyll metabolic process	7.23E-05
24	GO:0010196: nonphotochemical quenching	2.89E-04
25	GO:0042335: cuticle development	3.38E-04
26	GO:0010028: xanthophyll cycle	3.40E-04
27	GO:0071588: hydrogen peroxide mediated signaling pathway	3.40E-04
28	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.40E-04
29	GO:0043489: RNA stabilization	3.40E-04
30	GO:0000481: maturation of 5S rRNA	3.40E-04
31	GO:0042371: vitamin K biosynthetic process	3.40E-04
32	GO:0006106: fumarate metabolic process	3.40E-04
33	GO:0071482: cellular response to light stimulus	4.45E-04
34	GO:0010206: photosystem II repair	5.35E-04
35	GO:0016122: xanthophyll metabolic process	7.40E-04
36	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.40E-04
37	GO:0043255: regulation of carbohydrate biosynthetic process	7.40E-04
38	GO:0010541: acropetal auxin transport	7.40E-04
39	GO:0009658: chloroplast organization	8.32E-04
40	GO:0016024: CDP-diacylglycerol biosynthetic process	9.69E-04
41	GO:0018298: protein-chromophore linkage	1.09E-03
42	GO:0006006: glucose metabolic process	1.10E-03
43	GO:1902448: positive regulation of shade avoidance	1.20E-03
44	GO:0006000: fructose metabolic process	1.20E-03
45	GO:0090391: granum assembly	1.20E-03
46	GO:0006518: peptide metabolic process	1.20E-03
47	GO:0010160: formation of animal organ boundary	1.20E-03
48	GO:0080055: low-affinity nitrate transport	1.20E-03
49	GO:0010540: basipetal auxin transport	1.23E-03
50	GO:0019253: reductive pentose-phosphate cycle	1.23E-03
51	GO:0009631: cold acclimation	1.31E-03
52	GO:0009637: response to blue light	1.47E-03
53	GO:0051513: regulation of monopolar cell growth	1.72E-03
54	GO:0051639: actin filament network formation	1.72E-03
55	GO:0080170: hydrogen peroxide transmembrane transport	1.72E-03
56	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.72E-03
57	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.72E-03
58	GO:0010306: rhamnogalacturonan II biosynthetic process	1.72E-03
59	GO:1901332: negative regulation of lateral root development	1.72E-03
60	GO:2001141: regulation of RNA biosynthetic process	1.72E-03
61	GO:0009416: response to light stimulus	1.85E-03
62	GO:0006869: lipid transport	1.95E-03
63	GO:0010109: regulation of photosynthesis	2.31E-03
64	GO:0051764: actin crosslink formation	2.31E-03
65	GO:0009765: photosynthesis, light harvesting	2.31E-03
66	GO:0045727: positive regulation of translation	2.31E-03
67	GO:0030104: water homeostasis	2.31E-03
68	GO:0010021: amylopectin biosynthetic process	2.31E-03
69	GO:0009306: protein secretion	2.68E-03
70	GO:0008152: metabolic process	2.85E-03
71	GO:0006461: protein complex assembly	2.96E-03
72	GO:0032543: mitochondrial translation	2.96E-03
73	GO:0010236: plastoquinone biosynthetic process	2.96E-03
74	GO:0000413: protein peptidyl-prolyl isomerization	3.13E-03
75	GO:0048827: phyllome development	3.65E-03
76	GO:0042549: photosystem II stabilization	3.65E-03
77	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.65E-03
78	GO:0016554: cytidine to uridine editing	3.65E-03
79	GO:0009913: epidermal cell differentiation	3.65E-03
80	GO:0006655: phosphatidylglycerol biosynthetic process	3.65E-03
81	GO:0060918: auxin transport	3.65E-03
82	GO:0010337: regulation of salicylic acid metabolic process	3.65E-03
83	GO:0006014: D-ribose metabolic process	3.65E-03
84	GO:0019252: starch biosynthetic process	3.89E-03
85	GO:0042372: phylloquinone biosynthetic process	4.40E-03
86	GO:1901259: chloroplast rRNA processing	4.40E-03
87	GO:0030488: tRNA methylation	4.40E-03
88	GO:0009854: oxidative photosynthetic carbon pathway	4.40E-03
89	GO:0010019: chloroplast-nucleus signaling pathway	4.40E-03
90	GO:0009772: photosynthetic electron transport in photosystem II	5.19E-03
91	GO:1900057: positive regulation of leaf senescence	5.19E-03
92	GO:0009793: embryo development ending in seed dormancy	5.54E-03
93	GO:0008610: lipid biosynthetic process	6.03E-03
94	GO:0030091: protein repair	6.03E-03
95	GO:0006605: protein targeting	6.03E-03
96	GO:0032508: DNA duplex unwinding	6.03E-03
97	GO:0010492: maintenance of shoot apical meristem identity	6.03E-03
98	GO:0006002: fructose 6-phosphate metabolic process	6.92E-03
99	GO:0009657: plastid organization	6.92E-03
100	GO:0009051: pentose-phosphate shunt, oxidative branch	7.85E-03
101	GO:0048507: meristem development	7.85E-03
102	GO:0006633: fatty acid biosynthetic process	8.31E-03
103	GO:0010218: response to far red light	8.69E-03
104	GO:0010205: photoinhibition	8.82E-03
105	GO:0009638: phototropism	8.82E-03
106	GO:0006779: porphyrin-containing compound biosynthetic process	8.82E-03
107	GO:1900865: chloroplast RNA modification	8.82E-03
108	GO:0016042: lipid catabolic process	9.00E-03
109	GO:0006782: protoporphyrinogen IX biosynthetic process	9.84E-03
110	GO:0006032: chitin catabolic process	9.84E-03
111	GO:0016051: carbohydrate biosynthetic process	1.00E-02
112	GO:0034599: cellular response to oxidative stress	1.05E-02
113	GO:0000038: very long-chain fatty acid metabolic process	1.09E-02
114	GO:0043085: positive regulation of catalytic activity	1.09E-02
115	GO:0006352: DNA-templated transcription, initiation	1.09E-02
116	GO:0008361: regulation of cell size	1.20E-02
117	GO:0010114: response to red light	1.29E-02
118	GO:0009718: anthocyanin-containing compound biosynthetic process	1.31E-02
119	GO:0006094: gluconeogenesis	1.31E-02
120	GO:0005986: sucrose biosynthetic process	1.31E-02
121	GO:0010102: lateral root morphogenesis	1.31E-02
122	GO:0009785: blue light signaling pathway	1.31E-02
123	GO:0006108: malate metabolic process	1.31E-02
124	GO:0010229: inflorescence development	1.31E-02
125	GO:0010143: cutin biosynthetic process	1.43E-02
126	GO:0010053: root epidermal cell differentiation	1.55E-02
127	GO:0009825: multidimensional cell growth	1.55E-02
128	GO:0010167: response to nitrate	1.55E-02
129	GO:0005985: sucrose metabolic process	1.55E-02
130	GO:0071732: cellular response to nitric oxide	1.55E-02
131	GO:0010025: wax biosynthetic process	1.67E-02
132	GO:0006636: unsaturated fatty acid biosynthetic process	1.67E-02
133	GO:0009809: lignin biosynthetic process	1.75E-02
134	GO:0000027: ribosomal large subunit assembly	1.80E-02
135	GO:0051017: actin filament bundle assembly	1.80E-02
136	GO:0006418: tRNA aminoacylation for protein translation	1.93E-02
137	GO:0009768: photosynthesis, light harvesting in photosystem I	1.93E-02
138	GO:0061077: chaperone-mediated protein folding	2.07E-02
139	GO:0016114: terpenoid biosynthetic process	2.07E-02
140	GO:0016998: cell wall macromolecule catabolic process	2.07E-02
141	GO:0035428: hexose transmembrane transport	2.21E-02
142	GO:0006012: galactose metabolic process	2.35E-02
143	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.35E-02
144	GO:0071369: cellular response to ethylene stimulus	2.35E-02
145	GO:0048443: stamen development	2.49E-02
146	GO:0045454: cell redox homeostasis	2.69E-02
147	GO:0080022: primary root development	2.79E-02
148	GO:0034220: ion transmembrane transport	2.79E-02
149	GO:0048868: pollen tube development	2.94E-02
150	GO:0046323: glucose import	2.94E-02
151	GO:0009958: positive gravitropism	2.94E-02
152	GO:0006662: glycerol ether metabolic process	2.94E-02
153	GO:0055085: transmembrane transport	3.17E-02
154	GO:0048825: cotyledon development	3.25E-02
155	GO:0071554: cell wall organization or biogenesis	3.42E-02
156	GO:0000302: response to reactive oxygen species	3.42E-02
157	GO:0042744: hydrogen peroxide catabolic process	3.55E-02
158	GO:0016032: viral process	3.58E-02
159	GO:0009790: embryo development	3.63E-02
160	GO:0009409: response to cold	3.68E-02
161	GO:1901657: glycosyl compound metabolic process	3.75E-02
162	GO:0030163: protein catabolic process	3.75E-02
163	GO:0071281: cellular response to iron ion	3.75E-02
164	GO:0009639: response to red or far red light	3.92E-02
165	GO:0009828: plant-type cell wall loosening	3.92E-02
166	GO:0045490: pectin catabolic process	4.29E-02
167	GO:0009451: RNA modification	4.39E-02
168	GO:0009911: positive regulation of flower development	4.44E-02
169	GO:0042128: nitrate assimilation	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
3	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
4	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
5	GO:0008887: glycerate kinase activity	0.00E+00
6	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0004823: leucine-tRNA ligase activity	0.00E+00
9	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
10	GO:0019843: rRNA binding	3.84E-13
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.03E-10
12	GO:0005528: FK506 binding	2.19E-09
13	GO:0003735: structural constituent of ribosome	2.92E-08
14	GO:0016851: magnesium chelatase activity	4.07E-05
15	GO:0043495: protein anchor	7.23E-05
16	GO:0008266: poly(U) RNA binding	8.72E-05
17	GO:0016168: chlorophyll binding	8.98E-05
18	GO:0019899: enzyme binding	2.89E-04
19	GO:0052689: carboxylic ester hydrolase activity	3.27E-04
20	GO:0004333: fumarate hydratase activity	3.40E-04
21	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.40E-04
22	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.40E-04
23	GO:0045485: omega-6 fatty acid desaturase activity	3.40E-04
24	GO:0047746: chlorophyllase activity	7.40E-04
25	GO:0033201: alpha-1,4-glucan synthase activity	7.40E-04
26	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.40E-04
27	GO:0016630: protochlorophyllide reductase activity	7.40E-04
28	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.40E-04
29	GO:0016788: hydrolase activity, acting on ester bonds	8.60E-04
30	GO:0004565: beta-galactosidase activity	1.10E-03
31	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.20E-03
32	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.20E-03
33	GO:0004373: glycogen (starch) synthase activity	1.20E-03
34	GO:0002161: aminoacyl-tRNA editing activity	1.20E-03
35	GO:0004751: ribose-5-phosphate isomerase activity	1.20E-03
36	GO:0016787: hydrolase activity	1.66E-03
37	GO:0008097: 5S rRNA binding	1.72E-03
38	GO:0043023: ribosomal large subunit binding	1.72E-03
39	GO:0001053: plastid sigma factor activity	2.31E-03
40	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.31E-03
41	GO:0016987: sigma factor activity	2.31E-03
42	GO:0052793: pectin acetylesterase activity	2.31E-03
43	GO:0009011: starch synthase activity	2.31E-03
44	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.31E-03
45	GO:0004659: prenyltransferase activity	2.31E-03
46	GO:0022891: substrate-specific transmembrane transporter activity	2.46E-03
47	GO:0003959: NADPH dehydrogenase activity	2.96E-03
48	GO:0004040: amidase activity	2.96E-03
49	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.65E-03
50	GO:0004130: cytochrome-c peroxidase activity	3.65E-03
51	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.65E-03
52	GO:0016688: L-ascorbate peroxidase activity	3.65E-03
53	GO:0051920: peroxiredoxin activity	4.40E-03
54	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.40E-03
55	GO:0004747: ribokinase activity	4.40E-03
56	GO:0016746: transferase activity, transferring acyl groups	4.84E-03
57	GO:0016209: antioxidant activity	6.03E-03
58	GO:0004034: aldose 1-epimerase activity	6.03E-03
59	GO:0052747: sinapyl alcohol dehydrogenase activity	6.03E-03
60	GO:0008865: fructokinase activity	6.03E-03
61	GO:0008236: serine-type peptidase activity	7.48E-03
62	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.88E-03
63	GO:0004222: metalloendopeptidase activity	8.69E-03
64	GO:0004568: chitinase activity	9.84E-03
65	GO:0008047: enzyme activator activity	9.84E-03
66	GO:0015020: glucuronosyltransferase activity	9.84E-03
67	GO:0050661: NADP binding	1.14E-02
68	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.20E-02
69	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.27E-02
70	GO:0042802: identical protein binding	1.27E-02
71	GO:0031072: heat shock protein binding	1.31E-02
72	GO:0010329: auxin efflux transmembrane transporter activity	1.31E-02
73	GO:0004022: alcohol dehydrogenase (NAD) activity	1.31E-02
74	GO:0008289: lipid binding	1.55E-02
75	GO:0031409: pigment binding	1.67E-02
76	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.67E-02
77	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.67E-02
78	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.67E-02
79	GO:0051536: iron-sulfur cluster binding	1.80E-02
80	GO:0004707: MAP kinase activity	2.07E-02
81	GO:0030570: pectate lyase activity	2.35E-02
82	GO:0003756: protein disulfide isomerase activity	2.49E-02
83	GO:0004812: aminoacyl-tRNA ligase activity	2.64E-02
84	GO:0047134: protein-disulfide reductase activity	2.64E-02
85	GO:0004871: signal transducer activity	2.85E-02
86	GO:0008080: N-acetyltransferase activity	2.94E-02
87	GO:0004791: thioredoxin-disulfide reductase activity	3.10E-02
88	GO:0016853: isomerase activity	3.10E-02
89	GO:0005355: glucose transmembrane transporter activity	3.10E-02
90	GO:0050662: coenzyme binding	3.10E-02
91	GO:0004252: serine-type endopeptidase activity	3.46E-02
92	GO:0016491: oxidoreductase activity	3.51E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.75E-02
94	GO:0051015: actin filament binding	3.75E-02
95	GO:0016791: phosphatase activity	3.92E-02
96	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.00E-02
97	GO:0003723: RNA binding	4.07E-02
98	GO:0008237: metallopeptidase activity	4.09E-02
99	GO:0016413: O-acetyltransferase activity	4.26E-02
100	GO:0003729: mRNA binding	4.29E-02
101	GO:0015250: water channel activity	4.44E-02
102	GO:0008375: acetylglucosaminyltransferase activity	4.80E-02
103	GO:0102483: scopolin beta-glucosidase activity	4.98E-02
104	GO:0004721: phosphoprotein phosphatase activity	4.98E-02
105	GO:0030247: polysaccharide binding	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.09E-54
2	GO:0009570: chloroplast stroma	5.90E-41
3	GO:0009535: chloroplast thylakoid membrane	1.64E-30
4	GO:0009534: chloroplast thylakoid	3.39E-30
5	GO:0009941: chloroplast envelope	1.33E-29
6	GO:0009543: chloroplast thylakoid lumen	2.64E-19
7	GO:0009579: thylakoid	5.15E-18
8	GO:0031977: thylakoid lumen	8.82E-16
9	GO:0005840: ribosome	3.17E-09
10	GO:0016020: membrane	4.25E-06
11	GO:0009533: chloroplast stromal thylakoid	7.14E-06
12	GO:0010007: magnesium chelatase complex	1.84E-05
13	GO:0031969: chloroplast membrane	4.26E-05
14	GO:0042651: thylakoid membrane	1.65E-04
15	GO:0010287: plastoglobule	1.84E-04
16	GO:0009547: plastid ribosome	3.40E-04
17	GO:0045239: tricarboxylic acid cycle enzyme complex	3.40E-04
18	GO:0043674: columella	3.40E-04
19	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.40E-04
20	GO:0009515: granal stacked thylakoid	3.40E-04
21	GO:0048046: apoplast	3.63E-04
22	GO:0009523: photosystem II	4.50E-04
23	GO:0005618: cell wall	4.83E-04
24	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.35E-04
25	GO:0030093: chloroplast photosystem I	7.40E-04
26	GO:0000311: plastid large ribosomal subunit	9.69E-04
27	GO:0032040: small-subunit processome	9.69E-04
28	GO:0030095: chloroplast photosystem II	1.23E-03
29	GO:0032432: actin filament bundle	1.72E-03
30	GO:0009654: photosystem II oxygen evolving complex	1.88E-03
31	GO:0009522: photosystem I	3.63E-03
32	GO:0019898: extrinsic component of membrane	3.89E-03
33	GO:0009706: chloroplast inner membrane	4.66E-03
34	GO:0042807: central vacuole	5.19E-03
35	GO:0009295: nucleoid	5.37E-03
36	GO:0009501: amyloplast	6.03E-03
37	GO:0009538: photosystem I reaction center	6.03E-03
38	GO:0008180: COP9 signalosome	7.85E-03
39	GO:0015934: large ribosomal subunit	9.11E-03
40	GO:0016021: integral component of membrane	1.04E-02
41	GO:0005884: actin filament	1.09E-02
42	GO:0009505: plant-type cell wall	1.16E-02
43	GO:0009508: plastid chromosome	1.31E-02
44	GO:0030076: light-harvesting complex	1.55E-02
45	GO:0015935: small ribosomal subunit	2.07E-02
46	GO:0005770: late endosome	2.94E-02
47	GO:0010319: stromule	4.09E-02
48	GO:0031225: anchored component of membrane	4.27E-02
49	GO:0030529: intracellular ribonucleoprotein complex	4.44E-02
50	GO:0005576: extracellular region	4.87E-02