GO Enrichment Analysis of Co-expressed Genes with
AT2G26550
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006223: uracil salvage | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 4 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 5 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 6 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 7 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 8 | GO:0006412: translation | 8.19E-14 |
| 9 | GO:0042254: ribosome biogenesis | 1.08E-09 |
| 10 | GO:0009658: chloroplast organization | 1.55E-05 |
| 11 | GO:0015979: photosynthesis | 3.50E-05 |
| 12 | GO:0015995: chlorophyll biosynthetic process | 7.23E-05 |
| 13 | GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process | 8.61E-05 |
| 14 | GO:1904966: positive regulation of vitamin E biosynthetic process | 8.61E-05 |
| 15 | GO:1904964: positive regulation of phytol biosynthetic process | 8.61E-05 |
| 16 | GO:0042371: vitamin K biosynthetic process | 8.61E-05 |
| 17 | GO:0006434: seryl-tRNA aminoacylation | 8.61E-05 |
| 18 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.42E-04 |
| 19 | GO:0009735: response to cytokinin | 1.72E-04 |
| 20 | GO:0010207: photosystem II assembly | 1.86E-04 |
| 21 | GO:0010143: cutin biosynthetic process | 1.86E-04 |
| 22 | GO:0001736: establishment of planar polarity | 2.04E-04 |
| 23 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.04E-04 |
| 24 | GO:0043039: tRNA aminoacylation | 2.04E-04 |
| 25 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.04E-04 |
| 26 | GO:0006518: peptide metabolic process | 3.42E-04 |
| 27 | GO:0080055: low-affinity nitrate transport | 3.42E-04 |
| 28 | GO:0006986: response to unfolded protein | 4.92E-04 |
| 29 | GO:2001141: regulation of RNA biosynthetic process | 4.92E-04 |
| 30 | GO:0051085: chaperone mediated protein folding requiring cofactor | 4.92E-04 |
| 31 | GO:0044206: UMP salvage | 6.55E-04 |
| 32 | GO:0010236: plastoquinone biosynthetic process | 8.29E-04 |
| 33 | GO:0043097: pyrimidine nucleoside salvage | 8.29E-04 |
| 34 | GO:0010027: thylakoid membrane organization | 9.13E-04 |
| 35 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.01E-03 |
| 36 | GO:0042549: photosystem II stabilization | 1.01E-03 |
| 37 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.01E-03 |
| 38 | GO:0006206: pyrimidine nucleobase metabolic process | 1.01E-03 |
| 39 | GO:0042372: phylloquinone biosynthetic process | 1.20E-03 |
| 40 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.20E-03 |
| 41 | GO:0017148: negative regulation of translation | 1.20E-03 |
| 42 | GO:0030488: tRNA methylation | 1.20E-03 |
| 43 | GO:0009772: photosynthetic electron transport in photosystem II | 1.41E-03 |
| 44 | GO:0010196: nonphotochemical quenching | 1.41E-03 |
| 45 | GO:0006605: protein targeting | 1.63E-03 |
| 46 | GO:0045010: actin nucleation | 1.63E-03 |
| 47 | GO:0032544: plastid translation | 1.86E-03 |
| 48 | GO:0071482: cellular response to light stimulus | 1.86E-03 |
| 49 | GO:0010206: photosystem II repair | 2.10E-03 |
| 50 | GO:0009051: pentose-phosphate shunt, oxidative branch | 2.10E-03 |
| 51 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.35E-03 |
| 52 | GO:0048829: root cap development | 2.61E-03 |
| 53 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.61E-03 |
| 54 | GO:0006352: DNA-templated transcription, initiation | 2.87E-03 |
| 55 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.87E-03 |
| 56 | GO:0048765: root hair cell differentiation | 2.87E-03 |
| 57 | GO:0006006: glucose metabolic process | 3.43E-03 |
| 58 | GO:0030036: actin cytoskeleton organization | 3.43E-03 |
| 59 | GO:0009116: nucleoside metabolic process | 4.65E-03 |
| 60 | GO:0000027: ribosomal large subunit assembly | 4.65E-03 |
| 61 | GO:0009790: embryo development | 5.23E-03 |
| 62 | GO:0003333: amino acid transmembrane transport | 5.32E-03 |
| 63 | GO:0007005: mitochondrion organization | 5.66E-03 |
| 64 | GO:0009306: protein secretion | 6.36E-03 |
| 65 | GO:0000413: protein peptidyl-prolyl isomerization | 7.10E-03 |
| 66 | GO:0042335: cuticle development | 7.10E-03 |
| 67 | GO:0008380: RNA splicing | 7.37E-03 |
| 68 | GO:0009958: positive gravitropism | 7.48E-03 |
| 69 | GO:0032502: developmental process | 9.07E-03 |
| 70 | GO:0030163: protein catabolic process | 9.48E-03 |
| 71 | GO:0010090: trichome morphogenesis | 9.48E-03 |
| 72 | GO:0009793: embryo development ending in seed dormancy | 1.22E-02 |
| 73 | GO:0048481: plant ovule development | 1.35E-02 |
| 74 | GO:0018298: protein-chromophore linkage | 1.35E-02 |
| 75 | GO:0009817: defense response to fungus, incompatible interaction | 1.35E-02 |
| 76 | GO:0010311: lateral root formation | 1.40E-02 |
| 77 | GO:0006865: amino acid transport | 1.55E-02 |
| 78 | GO:0006869: lipid transport | 1.56E-02 |
| 79 | GO:0009637: response to blue light | 1.60E-02 |
| 80 | GO:0016042: lipid catabolic process | 1.71E-02 |
| 81 | GO:0030001: metal ion transport | 1.76E-02 |
| 82 | GO:0006397: mRNA processing | 1.83E-02 |
| 83 | GO:0010114: response to red light | 1.92E-02 |
| 84 | GO:0009926: auxin polar transport | 1.92E-02 |
| 85 | GO:0008152: metabolic process | 1.94E-02 |
| 86 | GO:0006857: oligopeptide transport | 2.49E-02 |
| 87 | GO:0042545: cell wall modification | 2.98E-02 |
| 88 | GO:0009624: response to nematode | 3.04E-02 |
| 89 | GO:0055085: transmembrane transport | 3.95E-02 |
| 90 | GO:0006457: protein folding | 4.03E-02 |
| 91 | GO:0006633: fatty acid biosynthetic process | 4.20E-02 |
| 92 | GO:0016036: cellular response to phosphate starvation | 4.27E-02 |
| 93 | GO:0045490: pectin catabolic process | 4.49E-02 |
| 94 | GO:0009451: RNA modification | 4.56E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 2 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 4 | GO:0019843: rRNA binding | 1.38E-14 |
| 5 | GO:0003735: structural constituent of ribosome | 4.60E-12 |
| 6 | GO:0043023: ribosomal large subunit binding | 3.65E-06 |
| 7 | GO:0004045: aminoacyl-tRNA hydrolase activity | 6.94E-06 |
| 8 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 8.61E-05 |
| 9 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 8.61E-05 |
| 10 | GO:0004828: serine-tRNA ligase activity | 8.61E-05 |
| 11 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 8.61E-05 |
| 12 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 2.04E-04 |
| 13 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.13E-04 |
| 14 | GO:0005528: FK506 binding | 2.63E-04 |
| 15 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 3.42E-04 |
| 16 | GO:0050734: hydroxycinnamoyltransferase activity | 3.42E-04 |
| 17 | GO:0016851: magnesium chelatase activity | 4.92E-04 |
| 18 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 6.55E-04 |
| 19 | GO:0004659: prenyltransferase activity | 6.55E-04 |
| 20 | GO:0001053: plastid sigma factor activity | 6.55E-04 |
| 21 | GO:0004845: uracil phosphoribosyltransferase activity | 6.55E-04 |
| 22 | GO:0010011: auxin binding | 6.55E-04 |
| 23 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 6.55E-04 |
| 24 | GO:0016836: hydro-lyase activity | 6.55E-04 |
| 25 | GO:0016987: sigma factor activity | 6.55E-04 |
| 26 | GO:0010328: auxin influx transmembrane transporter activity | 6.55E-04 |
| 27 | GO:0043495: protein anchor | 6.55E-04 |
| 28 | GO:0004040: amidase activity | 8.29E-04 |
| 29 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.01E-03 |
| 30 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.01E-03 |
| 31 | GO:0004849: uridine kinase activity | 1.20E-03 |
| 32 | GO:0019899: enzyme binding | 1.41E-03 |
| 33 | GO:0016788: hydrolase activity, acting on ester bonds | 1.44E-03 |
| 34 | GO:0016746: transferase activity, transferring acyl groups | 3.70E-03 |
| 35 | GO:0008266: poly(U) RNA binding | 3.73E-03 |
| 36 | GO:0051536: iron-sulfur cluster binding | 4.65E-03 |
| 37 | GO:0051087: chaperone binding | 4.98E-03 |
| 38 | GO:0022891: substrate-specific transmembrane transporter activity | 6.01E-03 |
| 39 | GO:0008080: N-acetyltransferase activity | 7.48E-03 |
| 40 | GO:0003723: RNA binding | 9.00E-03 |
| 41 | GO:0016791: phosphatase activity | 9.91E-03 |
| 42 | GO:0008483: transaminase activity | 1.03E-02 |
| 43 | GO:0016168: chlorophyll binding | 1.17E-02 |
| 44 | GO:0008236: serine-type peptidase activity | 1.31E-02 |
| 45 | GO:0052689: carboxylic ester hydrolase activity | 1.31E-02 |
| 46 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.35E-02 |
| 47 | GO:0005509: calcium ion binding | 1.38E-02 |
| 48 | GO:0004222: metalloendopeptidase activity | 1.45E-02 |
| 49 | GO:0050661: NADP binding | 1.76E-02 |
| 50 | GO:0015293: symporter activity | 2.08E-02 |
| 51 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.37E-02 |
| 52 | GO:0008289: lipid binding | 2.45E-02 |
| 53 | GO:0015171: amino acid transmembrane transporter activity | 2.55E-02 |
| 54 | GO:0045330: aspartyl esterase activity | 2.55E-02 |
| 55 | GO:0030599: pectinesterase activity | 2.92E-02 |
| 56 | GO:0051082: unfolded protein binding | 3.04E-02 |
| 57 | GO:0030170: pyridoxal phosphate binding | 3.85E-02 |
| 58 | GO:0004252: serine-type endopeptidase activity | 3.85E-02 |
| 59 | GO:0016787: hydrolase activity | 3.95E-02 |
| 60 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.27E-02 |
| 61 | GO:0046910: pectinesterase inhibitor activity | 4.27E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.07E-37 |
| 3 | GO:0009570: chloroplast stroma | 6.31E-33 |
| 4 | GO:0009579: thylakoid | 3.86E-17 |
| 5 | GO:0009941: chloroplast envelope | 1.22E-16 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 3.08E-14 |
| 7 | GO:0031977: thylakoid lumen | 7.03E-13 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 4.25E-11 |
| 9 | GO:0005840: ribosome | 5.91E-10 |
| 10 | GO:0009534: chloroplast thylakoid | 6.64E-10 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 8.15E-06 |
| 12 | GO:0019898: extrinsic component of membrane | 2.81E-05 |
| 13 | GO:0009547: plastid ribosome | 8.61E-05 |
| 14 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 8.61E-05 |
| 15 | GO:0031969: chloroplast membrane | 2.70E-04 |
| 16 | GO:0042651: thylakoid membrane | 2.91E-04 |
| 17 | GO:0015935: small ribosomal subunit | 3.20E-04 |
| 18 | GO:0010007: magnesium chelatase complex | 3.42E-04 |
| 19 | GO:0016020: membrane | 5.20E-04 |
| 20 | GO:0030529: intracellular ribonucleoprotein complex | 9.13E-04 |
| 21 | GO:0031209: SCAR complex | 1.01E-03 |
| 22 | GO:0009986: cell surface | 1.41E-03 |
| 23 | GO:0009533: chloroplast stromal thylakoid | 1.41E-03 |
| 24 | GO:0000311: plastid large ribosomal subunit | 3.15E-03 |
| 25 | GO:0000312: plastid small ribosomal subunit | 3.73E-03 |
| 26 | GO:0030095: chloroplast photosystem II | 3.73E-03 |
| 27 | GO:0009536: plastid | 4.68E-03 |
| 28 | GO:0022626: cytosolic ribosome | 5.88E-03 |
| 29 | GO:0009523: photosystem II | 8.26E-03 |
| 30 | GO:0022625: cytosolic large ribosomal subunit | 1.25E-02 |
| 31 | GO:0005759: mitochondrial matrix | 4.20E-02 |
| 32 | GO:0031225: anchored component of membrane | 4.84E-02 |