co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G25830

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
2	GO:0070125: mitochondrial translational elongation	0.00E+00
3	GO:0080094: response to trehalose-6-phosphate	0.00E+00
4	GO:0006633: fatty acid biosynthetic process	2.39E-10
5	GO:0019510: S-adenosylhomocysteine catabolic process	4.74E-05
6	GO:0006169: adenosine salvage	4.74E-05
7	GO:0071258: cellular response to gravity	1.17E-04
8	GO:0043039: tRNA aminoacylation	1.17E-04
9	GO:0006152: purine nucleoside catabolic process	1.17E-04
10	GO:0006695: cholesterol biosynthetic process	1.17E-04
11	GO:0033353: S-adenosylmethionine cycle	1.17E-04
12	GO:0006730: one-carbon metabolic process	1.57E-04
13	GO:0045793: positive regulation of cell size	2.00E-04
14	GO:0006065: UDP-glucuronate biosynthetic process	2.00E-04
15	GO:0015840: urea transport	2.00E-04
16	GO:0055070: copper ion homeostasis	2.94E-04
17	GO:0080170: hydrogen peroxide transmembrane transport	2.94E-04
18	GO:0043481: anthocyanin accumulation in tissues in response to UV light	2.94E-04
19	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.94E-04
20	GO:0006085: acetyl-CoA biosynthetic process	3.94E-04
21	GO:0044209: AMP salvage	5.00E-04
22	GO:0048359: mucilage metabolic process involved in seed coat development	5.00E-04
23	GO:0006555: methionine metabolic process	6.13E-04
24	GO:0006796: phosphate-containing compound metabolic process	6.13E-04
25	GO:0010555: response to mannitol	7.31E-04
26	GO:0042026: protein refolding	7.31E-04
27	GO:0006458: 'de novo' protein folding	7.31E-04
28	GO:0017148: negative regulation of translation	7.31E-04
29	GO:0045995: regulation of embryonic development	8.54E-04
30	GO:0009642: response to light intensity	9.81E-04
31	GO:0006875: cellular metal ion homeostasis	9.81E-04
32	GO:0042742: defense response to bacterium	1.04E-03
33	GO:0048589: developmental growth	1.25E-03
34	GO:0015780: nucleotide-sugar transport	1.25E-03
35	GO:0045337: farnesyl diphosphate biosynthetic process	1.25E-03
36	GO:0033384: geranyl diphosphate biosynthetic process	1.25E-03
37	GO:0035999: tetrahydrofolate interconversion	1.40E-03
38	GO:0045037: protein import into chloroplast stroma	1.86E-03
39	GO:0046686: response to cadmium ion	2.02E-03
40	GO:0009735: response to cytokinin	2.05E-03
41	GO:0010020: chloroplast fission	2.20E-03
42	GO:0019253: reductive pentose-phosphate cycle	2.20E-03
43	GO:0046688: response to copper ion	2.38E-03
44	GO:0006833: water transport	2.56E-03
45	GO:0010025: wax biosynthetic process	2.56E-03
46	GO:0019344: cysteine biosynthetic process	2.74E-03
47	GO:0007010: cytoskeleton organization	2.74E-03
48	GO:0045490: pectin catabolic process	2.85E-03
49	GO:0008299: isoprenoid biosynthetic process	2.93E-03
50	GO:0006418: tRNA aminoacylation for protein translation	2.93E-03
51	GO:0007017: microtubule-based process	2.93E-03
52	GO:0061077: chaperone-mediated protein folding	3.12E-03
53	GO:0007005: mitochondrion organization	3.32E-03
54	GO:0030245: cellulose catabolic process	3.32E-03
55	GO:0009411: response to UV	3.52E-03
56	GO:0016117: carotenoid biosynthetic process	3.93E-03
57	GO:0034220: ion transmembrane transport	4.15E-03
58	GO:0000413: protein peptidyl-prolyl isomerization	4.15E-03
59	GO:0000271: polysaccharide biosynthetic process	4.15E-03
60	GO:0045489: pectin biosynthetic process	4.37E-03
61	GO:0019252: starch biosynthetic process	4.81E-03
62	GO:0010583: response to cyclopentenone	5.28E-03
63	GO:0016032: viral process	5.28E-03
64	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.61E-03
65	GO:0009911: positive regulation of flower development	6.50E-03
66	GO:0015995: chlorophyll biosynthetic process	7.28E-03
67	GO:0009817: defense response to fungus, incompatible interaction	7.81E-03
68	GO:0048767: root hair elongation	8.09E-03
69	GO:0007568: aging	8.65E-03
70	GO:0008152: metabolic process	8.81E-03
71	GO:0016051: carbohydrate biosynthetic process	9.22E-03
72	GO:0055114: oxidation-reduction process	9.69E-03
73	GO:0006839: mitochondrial transport	1.01E-02
74	GO:0006631: fatty acid metabolic process	1.04E-02
75	GO:0051707: response to other organism	1.10E-02
76	GO:0008643: carbohydrate transport	1.16E-02
77	GO:0006096: glycolytic process	1.53E-02
78	GO:0048367: shoot system development	1.57E-02
79	GO:0009793: embryo development ending in seed dormancy	1.62E-02
80	GO:0009740: gibberellic acid mediated signaling pathway	1.67E-02
81	GO:0042545: cell wall modification	1.71E-02
82	GO:0055085: transmembrane transport	1.81E-02
83	GO:0006457: protein folding	1.84E-02
84	GO:0006414: translational elongation	2.12E-02
85	GO:0009790: embryo development	2.29E-02
86	GO:0009651: response to salt stress	2.59E-02
87	GO:0071555: cell wall organization	2.89E-02
88	GO:0042254: ribosome biogenesis	3.56E-02
89	GO:0048366: leaf development	3.95E-02
90	GO:0006810: transport	4.23E-02
91	GO:0045454: cell redox homeostasis	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
2	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
3	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
4	GO:0047974: guanosine deaminase activity	0.00E+00
5	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
6	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	1.38E-07
7	GO:0004013: adenosylhomocysteinase activity	4.74E-05
8	GO:0004831: tyrosine-tRNA ligase activity	4.74E-05
9	GO:0004001: adenosine kinase activity	4.74E-05
10	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	4.74E-05
11	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	4.74E-05
12	GO:0015088: copper uptake transmembrane transporter activity	4.74E-05
13	GO:0004312: fatty acid synthase activity	1.17E-04
14	GO:0003979: UDP-glucose 6-dehydrogenase activity	2.00E-04
15	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	2.00E-04
16	GO:0004148: dihydrolipoyl dehydrogenase activity	2.00E-04
17	GO:0004751: ribose-5-phosphate isomerase activity	2.00E-04
18	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	2.94E-04
19	GO:0003878: ATP citrate synthase activity	2.94E-04
20	GO:0005200: structural constituent of cytoskeleton	3.85E-04
21	GO:0015204: urea transmembrane transporter activity	3.94E-04
22	GO:0016836: hydro-lyase activity	3.94E-04
23	GO:0005507: copper ion binding	6.12E-04
24	GO:0016462: pyrophosphatase activity	6.13E-04
25	GO:0051920: peroxiredoxin activity	7.31E-04
26	GO:0102391: decanoate--CoA ligase activity	7.31E-04
27	GO:0004467: long-chain fatty acid-CoA ligase activity	8.54E-04
28	GO:0004427: inorganic diphosphatase activity	8.54E-04
29	GO:0016209: antioxidant activity	9.81E-04
30	GO:0051287: NAD binding	1.07E-03
31	GO:0004337: geranyltranstransferase activity	1.25E-03
32	GO:0005381: iron ion transmembrane transporter activity	1.40E-03
33	GO:0044183: protein binding involved in protein folding	1.70E-03
34	GO:0004161: dimethylallyltranstransferase activity	1.70E-03
35	GO:0016829: lyase activity	2.24E-03
36	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.32E-03
37	GO:0030570: pectate lyase activity	3.52E-03
38	GO:0008810: cellulase activity	3.52E-03
39	GO:0008514: organic anion transmembrane transporter activity	3.73E-03
40	GO:0004812: aminoacyl-tRNA ligase activity	3.93E-03
41	GO:0015250: water channel activity	6.50E-03
42	GO:0016491: oxidoreductase activity	7.94E-03
43	GO:0003746: translation elongation factor activity	9.22E-03
44	GO:0003729: mRNA binding	9.27E-03
45	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.23E-02
46	GO:0045330: aspartyl esterase activity	1.46E-02
47	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.57E-02
48	GO:0004650: polygalacturonase activity	1.64E-02
49	GO:0030599: pectinesterase activity	1.67E-02
50	GO:0016740: transferase activity	1.74E-02
51	GO:0051082: unfolded protein binding	1.75E-02
52	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.88E-02
53	GO:0016758: transferase activity, transferring hexosyl groups	2.01E-02
54	GO:0000287: magnesium ion binding	3.47E-02
55	GO:0004601: peroxidase activity	3.51E-02
56	GO:0004672: protein kinase activity	4.23E-02
57	GO:0052689: carboxylic ester hydrolase activity	4.40E-02
58	GO:0042803: protein homodimerization activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009941: chloroplast envelope	2.46E-13
3	GO:0009570: chloroplast stroma	2.53E-12
4	GO:0009507: chloroplast	1.77E-08
5	GO:0009579: thylakoid	4.20E-06
6	GO:0005829: cytosol	2.03E-05
7	GO:0005618: cell wall	9.35E-05
8	GO:0031225: anchored component of membrane	1.00E-04
9	GO:0009346: citrate lyase complex	2.94E-04
10	GO:0022626: cytosolic ribosome	3.31E-04
11	GO:0031897: Tic complex	3.94E-04
12	GO:0046658: anchored component of plasma membrane	4.35E-04
13	GO:0055035: plastid thylakoid membrane	5.00E-04
14	GO:0031977: thylakoid lumen	8.28E-04
15	GO:0042807: central vacuole	8.54E-04
16	GO:0000326: protein storage vacuole	1.11E-03
17	GO:0045298: tubulin complex	1.25E-03
18	GO:0009536: plastid	1.40E-03
19	GO:0016020: membrane	1.76E-03
20	GO:0048046: apoplast	1.76E-03
21	GO:0005875: microtubule associated complex	2.56E-03
22	GO:0009534: chloroplast thylakoid	2.91E-03
23	GO:0010319: stromule	6.00E-03
24	GO:0005856: cytoskeleton	1.20E-02
25	GO:0009535: chloroplast thylakoid membrane	1.56E-02
26	GO:0009706: chloroplast inner membrane	1.75E-02
27	GO:0009543: chloroplast thylakoid lumen	2.05E-02
28	GO:0005759: mitochondrial matrix	2.41E-02
29	GO:0009705: plant-type vacuole membrane	2.57E-02
30	GO:0005774: vacuolar membrane	2.70E-02
31	GO:0005840: ribosome	3.02E-02
32	GO:0005886: plasma membrane	3.48E-02
33	GO:0005773: vacuole	4.57E-02