co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G25080

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
3	GO:0015979: photosynthesis	2.81E-12
4	GO:0015995: chlorophyll biosynthetic process	3.58E-07
5	GO:0009768: photosynthesis, light harvesting in photosystem I	1.95E-06
6	GO:0000476: maturation of 4.5S rRNA	4.60E-05
7	GO:0000967: rRNA 5'-end processing	4.60E-05
8	GO:0034470: ncRNA processing	1.13E-04
9	GO:0042938: dipeptide transport	3.84E-04
10	GO:0009765: photosynthesis, light harvesting	3.84E-04
11	GO:0018298: protein-chromophore linkage	5.38E-04
12	GO:0045926: negative regulation of growth	7.13E-04
13	GO:0009942: longitudinal axis specification	7.13E-04
14	GO:0010189: vitamin E biosynthetic process	7.13E-04
15	GO:0009645: response to low light intensity stimulus	8.33E-04
16	GO:0010196: nonphotochemical quenching	8.33E-04
17	GO:0009769: photosynthesis, light harvesting in photosystem II	8.33E-04
18	GO:0050821: protein stabilization	9.57E-04
19	GO:0009819: drought recovery	9.57E-04
20	GO:0009642: response to light intensity	9.57E-04
21	GO:0006353: DNA-templated transcription, termination	9.57E-04
22	GO:0007389: pattern specification process	1.09E-03
23	GO:0010206: photosystem II repair	1.22E-03
24	GO:0009734: auxin-activated signaling pathway	1.63E-03
25	GO:0019684: photosynthesis, light reaction	1.66E-03
26	GO:0043085: positive regulation of catalytic activity	1.66E-03
27	GO:0018119: peptidyl-cysteine S-nitrosylation	1.66E-03
28	GO:0009698: phenylpropanoid metabolic process	1.66E-03
29	GO:0015706: nitrate transport	1.81E-03
30	GO:0009767: photosynthetic electron transport chain	1.98E-03
31	GO:0007623: circadian rhythm	2.74E-03
32	GO:0007017: microtubule-based process	2.85E-03
33	GO:0009269: response to desiccation	3.04E-03
34	GO:0000226: microtubule cytoskeleton organization	4.04E-03
35	GO:0006662: glycerol ether metabolic process	4.25E-03
36	GO:0007018: microtubule-based movement	4.47E-03
37	GO:0009723: response to ethylene	4.86E-03
38	GO:0010193: response to ozone	4.91E-03
39	GO:0010583: response to cyclopentenone	5.13E-03
40	GO:0010252: auxin homeostasis	5.60E-03
41	GO:0045454: cell redox homeostasis	6.23E-03
42	GO:0016311: dephosphorylation	7.34E-03
43	GO:0010218: response to far red light	8.14E-03
44	GO:0007568: aging	8.41E-03
45	GO:0006865: amino acid transport	8.68E-03
46	GO:0009637: response to blue light	8.96E-03
47	GO:0034599: cellular response to oxidative stress	9.25E-03
48	GO:0010114: response to red light	1.07E-02
49	GO:0009926: auxin polar transport	1.07E-02
50	GO:0009644: response to high light intensity	1.13E-02
51	GO:0006812: cation transport	1.26E-02
52	GO:0042538: hyperosmotic salinity response	1.26E-02
53	GO:0010224: response to UV-B	1.35E-02
54	GO:0006857: oligopeptide transport	1.39E-02
55	GO:0043086: negative regulation of catalytic activity	1.49E-02
56	GO:0006413: translational initiation	2.38E-02
57	GO:0040008: regulation of growth	2.42E-02
58	GO:0006470: protein dephosphorylation	2.75E-02
59	GO:0009658: chloroplast organization	3.42E-02
60	GO:0007049: cell cycle	3.69E-02
61	GO:0009409: response to cold	3.75E-02
62	GO:0080167: response to karrikin	3.98E-02
63	GO:0044550: secondary metabolite biosynthetic process	4.23E-02

Rank	GO Term	Adjusted P value
1	GO:0045550: geranylgeranyl reductase activity	0.00E+00
2	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
3	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
4	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
5	GO:0090711: FMN hydrolase activity	0.00E+00
6	GO:0031409: pigment binding	9.77E-05
7	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.13E-04
8	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.95E-04
9	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.85E-04
10	GO:0016851: magnesium chelatase activity	2.85E-04
11	GO:0042936: dipeptide transporter activity	3.84E-04
12	GO:0016168: chlorophyll binding	4.38E-04
13	GO:0004462: lactoylglutathione lyase activity	5.98E-04
14	GO:0051537: 2 iron, 2 sulfur cluster binding	9.27E-04
15	GO:0009672: auxin:proton symporter activity	1.36E-03
16	GO:0008047: enzyme activator activity	1.51E-03
17	GO:0015035: protein disulfide oxidoreductase activity	1.65E-03
18	GO:0010329: auxin efflux transmembrane transporter activity	1.98E-03
19	GO:0008266: poly(U) RNA binding	2.14E-03
20	GO:0004190: aspartic-type endopeptidase activity	2.31E-03
21	GO:0047134: protein-disulfide reductase activity	3.83E-03
22	GO:0004791: thioredoxin-disulfide reductase activity	4.47E-03
23	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.37E-03
24	GO:0005200: structural constituent of cytoskeleton	5.84E-03
25	GO:0005215: transporter activity	6.05E-03
26	GO:0003993: acid phosphatase activity	9.25E-03
27	GO:0004185: serine-type carboxypeptidase activity	1.07E-02
28	GO:0043621: protein self-association	1.13E-02
29	GO:0016298: lipase activity	1.35E-02
30	GO:0003777: microtubule motor activity	1.42E-02
31	GO:0015171: amino acid transmembrane transporter activity	1.42E-02
32	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.03E-02
33	GO:0016829: lyase activity	2.10E-02
34	GO:0046910: pectinesterase inhibitor activity	2.38E-02
35	GO:0015297: antiporter activity	2.42E-02
36	GO:0005509: calcium ion binding	2.56E-02
37	GO:0008017: microtubule binding	2.59E-02
38	GO:0005506: iron ion binding	2.73E-02
39	GO:0003743: translation initiation factor activity	2.80E-02
40	GO:0008168: methyltransferase activity	3.32E-02
41	GO:0008233: peptidase activity	3.93E-02
42	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.78E-02
43	GO:0004722: protein serine/threonine phosphatase activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009534: chloroplast thylakoid	2.98E-18
3	GO:0009535: chloroplast thylakoid membrane	2.93E-17
4	GO:0009507: chloroplast	6.66E-14
5	GO:0009579: thylakoid	8.81E-12
6	GO:0009538: photosystem I reaction center	8.13E-08
7	GO:0009941: chloroplast envelope	1.95E-07
8	GO:0010287: plastoglobule	2.19E-07
9	GO:0009543: chloroplast thylakoid lumen	2.53E-07
10	GO:0030095: chloroplast photosystem II	8.91E-07
11	GO:0031977: thylakoid lumen	1.15E-06
12	GO:0009522: photosystem I	6.39E-06
13	GO:0009783: photosystem II antenna complex	4.60E-05
14	GO:0009654: photosystem II oxygen evolving complex	1.23E-04
15	GO:0009706: chloroplast inner membrane	1.35E-04
16	GO:0010007: magnesium chelatase complex	1.95E-04
17	GO:0019898: extrinsic component of membrane	2.68E-04
18	GO:0009570: chloroplast stroma	3.01E-04
19	GO:0009517: PSII associated light-harvesting complex II	3.84E-04
20	GO:0030660: Golgi-associated vesicle membrane	3.84E-04
21	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	3.84E-04
22	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	9.57E-04
23	GO:0045298: tubulin complex	1.22E-03
24	GO:0016020: membrane	1.56E-03
25	GO:0005765: lysosomal membrane	1.66E-03
26	GO:0030076: light-harvesting complex	2.31E-03
27	GO:0042651: thylakoid membrane	2.85E-03
28	GO:0005871: kinesin complex	3.83E-03
29	GO:0009523: photosystem II	4.68E-03
30	GO:0005874: microtubule	5.03E-03
31	GO:0010008: endosome membrane	1.52E-02
32	GO:0005623: cell	2.03E-02
33	GO:0016021: integral component of membrane	2.16E-02
34	GO:0031969: chloroplast membrane	3.98E-02