Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G21960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
3GO:0006429: leucyl-tRNA aminoacylation0.00E+00
4GO:0002184: cytoplasmic translational termination0.00E+00
5GO:0061635: regulation of protein complex stability0.00E+00
6GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
7GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
8GO:0018023: peptidyl-lysine trimethylation0.00E+00
9GO:0009773: photosynthetic electron transport in photosystem I1.91E-12
10GO:0010027: thylakoid membrane organization7.40E-09
11GO:0015994: chlorophyll metabolic process7.34E-07
12GO:0015979: photosynthesis1.26E-06
13GO:0016122: xanthophyll metabolic process6.07E-06
14GO:0010205: photoinhibition3.44E-05
15GO:0010021: amylopectin biosynthetic process8.29E-05
16GO:0006094: gluconeogenesis8.61E-05
17GO:0010207: photosystem II assembly1.04E-04
18GO:0045038: protein import into chloroplast thylakoid membrane1.30E-04
19GO:0010304: PSII associated light-harvesting complex II catabolic process1.86E-04
20GO:0042549: photosystem II stabilization1.86E-04
21GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.27E-04
22GO:0080051: cutin transport3.67E-04
23GO:0065002: intracellular protein transmembrane transport3.67E-04
24GO:0043686: co-translational protein modification3.67E-04
25GO:0010028: xanthophyll cycle3.67E-04
26GO:0034337: RNA folding3.67E-04
27GO:0071588: hydrogen peroxide mediated signaling pathway3.67E-04
28GO:0000305: response to oxygen radical3.67E-04
29GO:0043953: protein transport by the Tat complex3.67E-04
30GO:1904966: positive regulation of vitamin E biosynthetic process3.67E-04
31GO:1904964: positive regulation of phytol biosynthetic process3.67E-04
32GO:0008610: lipid biosynthetic process4.09E-04
33GO:0006605: protein targeting4.09E-04
34GO:0071482: cellular response to light stimulus5.01E-04
35GO:0032544: plastid translation5.01E-04
36GO:0019252: starch biosynthetic process5.24E-04
37GO:0009735: response to cytokinin5.45E-04
38GO:0000373: Group II intron splicing6.01E-04
39GO:0030388: fructose 1,6-bisphosphate metabolic process8.00E-04
40GO:0010275: NAD(P)H dehydrogenase complex assembly8.00E-04
41GO:0035304: regulation of protein dephosphorylation8.00E-04
42GO:0009915: phloem sucrose loading8.00E-04
43GO:0080005: photosystem stoichiometry adjustment8.00E-04
44GO:1902326: positive regulation of chlorophyll biosynthetic process8.00E-04
45GO:1900871: chloroplast mRNA modification8.00E-04
46GO:0015908: fatty acid transport8.00E-04
47GO:0042939: tripeptide transport8.00E-04
48GO:0018026: peptidyl-lysine monomethylation8.00E-04
49GO:0071457: cellular response to ozone8.00E-04
50GO:0005983: starch catabolic process1.08E-03
51GO:0015995: chlorophyll biosynthetic process1.12E-03
52GO:0016050: vesicle organization1.29E-03
53GO:1902448: positive regulation of shade avoidance1.29E-03
54GO:0006000: fructose metabolic process1.29E-03
55GO:0055114: oxidation-reduction process1.29E-03
56GO:0090391: granum assembly1.29E-03
57GO:0006518: peptide metabolic process1.29E-03
58GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.29E-03
59GO:0051604: protein maturation1.29E-03
60GO:0006833: water transport1.73E-03
61GO:2001141: regulation of RNA biosynthetic process1.87E-03
62GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.87E-03
63GO:0071484: cellular response to light intensity1.87E-03
64GO:0009152: purine ribonucleotide biosynthetic process1.87E-03
65GO:0046653: tetrahydrofolate metabolic process1.87E-03
66GO:0009052: pentose-phosphate shunt, non-oxidative branch1.87E-03
67GO:0080170: hydrogen peroxide transmembrane transport1.87E-03
68GO:0010222: stem vascular tissue pattern formation2.51E-03
69GO:0071486: cellular response to high light intensity2.51E-03
70GO:0009765: photosynthesis, light harvesting2.51E-03
71GO:0006109: regulation of carbohydrate metabolic process2.51E-03
72GO:0045727: positive regulation of translation2.51E-03
73GO:0006749: glutathione metabolic process2.51E-03
74GO:0042938: dipeptide transport2.51E-03
75GO:0031365: N-terminal protein amino acid modification3.21E-03
76GO:0006461: protein complex assembly3.21E-03
77GO:0032957: inositol trisphosphate metabolic process3.21E-03
78GO:0071493: cellular response to UV-B3.21E-03
79GO:0032543: mitochondrial translation3.21E-03
80GO:0008152: metabolic process3.52E-03
81GO:0042335: cuticle development3.53E-03
82GO:0034220: ion transmembrane transport3.53E-03
83GO:0055085: transmembrane transport3.77E-03
84GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.96E-03
85GO:0000470: maturation of LSU-rRNA3.96E-03
86GO:0009913: epidermal cell differentiation3.96E-03
87GO:0006655: phosphatidylglycerol biosynthetic process3.96E-03
88GO:0016554: cytidine to uridine editing3.96E-03
89GO:0010190: cytochrome b6f complex assembly3.96E-03
90GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.96E-03
91GO:0006096: glycolytic process4.29E-03
92GO:0009658: chloroplast organization4.50E-03
93GO:0010019: chloroplast-nucleus signaling pathway4.78E-03
94GO:1901259: chloroplast rRNA processing4.78E-03
95GO:0010189: vitamin E biosynthetic process4.78E-03
96GO:0015693: magnesium ion transport5.64E-03
97GO:0009772: photosynthetic electron transport in photosystem II5.64E-03
98GO:0010196: nonphotochemical quenching5.64E-03
99GO:1900057: positive regulation of leaf senescence5.64E-03
100GO:0010492: maintenance of shoot apical meristem identity6.56E-03
101GO:0048564: photosystem I assembly6.56E-03
102GO:0030091: protein repair6.56E-03
103GO:0005978: glycogen biosynthetic process6.56E-03
104GO:0009642: response to light intensity6.56E-03
105GO:0006810: transport7.18E-03
106GO:0006002: fructose 6-phosphate metabolic process7.52E-03
107GO:0015996: chlorophyll catabolic process7.52E-03
108GO:0019430: removal of superoxide radicals7.52E-03
109GO:0009657: plastid organization7.52E-03
110GO:0009416: response to light stimulus8.11E-03
111GO:0098656: anion transmembrane transport8.54E-03
112GO:0006098: pentose-phosphate shunt8.54E-03
113GO:0010206: photosystem II repair8.54E-03
114GO:0048507: meristem development8.54E-03
115GO:0018298: protein-chromophore linkage8.88E-03
116GO:0005982: starch metabolic process9.60E-03
117GO:0009638: phototropism9.60E-03
118GO:1900865: chloroplast RNA modification9.60E-03
119GO:0009637: response to blue light1.13E-02
120GO:0034599: cellular response to oxidative stress1.18E-02
121GO:0046856: phosphatidylinositol dephosphorylation1.19E-02
122GO:0000038: very long-chain fatty acid metabolic process1.19E-02
123GO:0019684: photosynthesis, light reaction1.19E-02
124GO:0009073: aromatic amino acid family biosynthetic process1.19E-02
125GO:0043085: positive regulation of catalytic activity1.19E-02
126GO:1903507: negative regulation of nucleic acid-templated transcription1.19E-02
127GO:0006352: DNA-templated transcription, initiation1.19E-02
128GO:0007166: cell surface receptor signaling pathway1.30E-02
129GO:0016024: CDP-diacylglycerol biosynthetic process1.31E-02
130GO:0006631: fatty acid metabolic process1.34E-02
131GO:0009718: anthocyanin-containing compound biosynthetic process1.43E-02
132GO:0005986: sucrose biosynthetic process1.43E-02
133GO:0010588: cotyledon vascular tissue pattern formation1.43E-02
134GO:0010628: positive regulation of gene expression1.43E-02
135GO:0009785: blue light signaling pathway1.43E-02
136GO:0006807: nitrogen compound metabolic process1.43E-02
137GO:0010114: response to red light1.46E-02
138GO:0009266: response to temperature stimulus1.56E-02
139GO:0010143: cutin biosynthetic process1.56E-02
140GO:0019253: reductive pentose-phosphate cycle1.56E-02
141GO:0005985: sucrose metabolic process1.69E-02
142GO:0071732: cellular response to nitric oxide1.69E-02
143GO:0006855: drug transmembrane transport1.70E-02
144GO:0031347: regulation of defense response1.77E-02
145GO:0010025: wax biosynthetic process1.82E-02
146GO:0006636: unsaturated fatty acid biosynthetic process1.82E-02
147GO:0006364: rRNA processing1.97E-02
148GO:0005975: carbohydrate metabolic process2.10E-02
149GO:0008299: isoprenoid biosynthetic process2.11E-02
150GO:0006418: tRNA aminoacylation for protein translation2.11E-02
151GO:0009695: jasmonic acid biosynthetic process2.11E-02
152GO:0009768: photosynthesis, light harvesting in photosystem I2.11E-02
153GO:0031408: oxylipin biosynthetic process2.25E-02
154GO:0016226: iron-sulfur cluster assembly2.40E-02
155GO:2000022: regulation of jasmonic acid mediated signaling pathway2.40E-02
156GO:0035428: hexose transmembrane transport2.40E-02
157GO:0071369: cellular response to ethylene stimulus2.56E-02
158GO:0009686: gibberellin biosynthetic process2.56E-02
159GO:0009306: protein secretion2.71E-02
160GO:0009611: response to wounding2.75E-02
161GO:0006979: response to oxidative stress2.75E-02
162GO:0000413: protein peptidyl-prolyl isomerization3.04E-02
163GO:0045454: cell redox homeostasis3.12E-02
164GO:0046323: glucose import3.20E-02
165GO:0010268: brassinosteroid homeostasis3.20E-02
166GO:0071472: cellular response to salt stress3.20E-02
167GO:0006662: glycerol ether metabolic process3.20E-02
168GO:0008654: phospholipid biosynthetic process3.55E-02
169GO:0016132: brassinosteroid biosynthetic process3.72E-02
170GO:0000302: response to reactive oxygen species3.72E-02
171GO:0016032: viral process3.90E-02
172GO:0019761: glucosinolate biosynthetic process3.90E-02
173GO:0042744: hydrogen peroxide catabolic process3.99E-02
174GO:0030163: protein catabolic process4.08E-02
175GO:0071281: cellular response to iron ion4.08E-02
176GO:0009567: double fertilization forming a zygote and endosperm4.27E-02
177GO:0016125: sterol metabolic process4.27E-02
178GO:0006633: fatty acid biosynthetic process4.40E-02
179GO:0071805: potassium ion transmembrane transport4.45E-02
180GO:0001666: response to hypoxia4.83E-02
181GO:0009451: RNA modification4.93E-02
RankGO TermAdjusted P value
1GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
2GO:0005048: signal sequence binding0.00E+00
3GO:0010303: limit dextrinase activity0.00E+00
4GO:0046422: violaxanthin de-epoxidase activity0.00E+00
5GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
6GO:0009976: tocopherol cyclase activity0.00E+00
7GO:0051060: pullulanase activity0.00E+00
8GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
9GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
10GO:0004823: leucine-tRNA ligase activity0.00E+00
11GO:0016787: hydrolase activity8.11E-05
12GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.35E-04
13GO:0005528: FK506 binding1.69E-04
14GO:0004332: fructose-bisphosphate aldolase activity1.86E-04
15GO:0015245: fatty acid transporter activity3.67E-04
16GO:0050139: nicotinate-N-glucosyltransferase activity3.67E-04
17GO:0051777: ent-kaurenoate oxidase activity3.67E-04
18GO:0004856: xylulokinase activity3.67E-04
19GO:0050308: sugar-phosphatase activity3.67E-04
20GO:0010242: oxygen evolving activity3.67E-04
21GO:0004321: fatty-acyl-CoA synthase activity3.67E-04
22GO:0019203: carbohydrate phosphatase activity3.67E-04
23GO:0034256: chlorophyll(ide) b reductase activity3.67E-04
24GO:0042586: peptide deformylase activity3.67E-04
25GO:0045485: omega-6 fatty acid desaturase activity3.67E-04
26GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.67E-04
27GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.71E-04
28GO:0004362: glutathione-disulfide reductase activity8.00E-04
29GO:0047746: chlorophyllase activity8.00E-04
30GO:0009977: proton motive force dependent protein transmembrane transporter activity8.00E-04
31GO:0033201: alpha-1,4-glucan synthase activity8.00E-04
32GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.00E-04
33GO:0003844: 1,4-alpha-glucan branching enzyme activity8.00E-04
34GO:0016630: protochlorophyllide reductase activity8.00E-04
35GO:0042937: tripeptide transporter activity8.00E-04
36GO:0004565: beta-galactosidase activity1.23E-03
37GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.29E-03
38GO:0070402: NADPH binding1.29E-03
39GO:0008864: formyltetrahydrofolate deformylase activity1.29E-03
40GO:0047325: inositol tetrakisphosphate 1-kinase activity1.29E-03
41GO:0043169: cation binding1.29E-03
42GO:0004373: glycogen (starch) synthase activity1.29E-03
43GO:0002161: aminoacyl-tRNA editing activity1.29E-03
44GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity1.29E-03
45GO:0004751: ribose-5-phosphate isomerase activity1.29E-03
46GO:0008266: poly(U) RNA binding1.38E-03
47GO:0043023: ribosomal large subunit binding1.87E-03
48GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.87E-03
49GO:0019201: nucleotide kinase activity1.87E-03
50GO:0004445: inositol-polyphosphate 5-phosphatase activity1.87E-03
51GO:0016851: magnesium chelatase activity1.87E-03
52GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.87E-03
53GO:0015079: potassium ion transmembrane transporter activity2.11E-03
54GO:0004176: ATP-dependent peptidase activity2.32E-03
55GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.51E-03
56GO:0016279: protein-lysine N-methyltransferase activity2.51E-03
57GO:0001053: plastid sigma factor activity2.51E-03
58GO:0042936: dipeptide transporter activity2.51E-03
59GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.51E-03
60GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.51E-03
61GO:0004045: aminoacyl-tRNA hydrolase activity2.51E-03
62GO:0080032: methyl jasmonate esterase activity2.51E-03
63GO:0016987: sigma factor activity2.51E-03
64GO:0009011: starch synthase activity2.51E-03
65GO:0043495: protein anchor2.51E-03
66GO:0003959: NADPH dehydrogenase activity3.21E-03
67GO:0016773: phosphotransferase activity, alcohol group as acceptor3.21E-03
68GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.96E-03
69GO:2001070: starch binding3.96E-03
70GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity3.96E-03
71GO:0004556: alpha-amylase activity3.96E-03
72GO:0004130: cytochrome-c peroxidase activity3.96E-03
73GO:0004784: superoxide dismutase activity3.96E-03
74GO:0016688: L-ascorbate peroxidase activity3.96E-03
75GO:0042578: phosphoric ester hydrolase activity3.96E-03
76GO:0016853: isomerase activity4.09E-03
77GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.78E-03
78GO:0004017: adenylate kinase activity4.78E-03
79GO:0004620: phospholipase activity5.64E-03
80GO:0016746: transferase activity, transferring acyl groups5.64E-03
81GO:0019899: enzyme binding5.64E-03
82GO:0016491: oxidoreductase activity5.68E-03
83GO:0008312: 7S RNA binding6.56E-03
84GO:0043022: ribosome binding6.56E-03
85GO:0015250: water channel activity6.80E-03
86GO:0016168: chlorophyll binding7.19E-03
87GO:0019843: rRNA binding7.24E-03
88GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors8.54E-03
89GO:0016207: 4-coumarate-CoA ligase activity8.54E-03
90GO:0008138: protein tyrosine/serine/threonine phosphatase activity8.54E-03
91GO:0004222: metalloendopeptidase activity9.81E-03
92GO:0004675: transmembrane receptor protein serine/threonine kinase activity9.98E-03
93GO:0008047: enzyme activator activity1.07E-02
94GO:0015386: potassium:proton antiporter activity1.19E-02
95GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.31E-02
96GO:0015095: magnesium ion transmembrane transporter activity1.43E-02
97GO:0009982: pseudouridine synthase activity1.43E-02
98GO:0004022: alcohol dehydrogenase (NAD) activity1.43E-02
99GO:0005315: inorganic phosphate transmembrane transporter activity1.43E-02
100GO:0042802: identical protein binding1.48E-02
101GO:0031409: pigment binding1.82E-02
102GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.82E-02
103GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.82E-02
104GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.82E-02
105GO:0005525: GTP binding1.91E-02
106GO:0016788: hydrolase activity, acting on ester bonds1.95E-02
107GO:0051536: iron-sulfur cluster binding1.96E-02
108GO:0004857: enzyme inhibitor activity1.96E-02
109GO:0003714: transcription corepressor activity1.96E-02
110GO:0043424: protein histidine kinase binding2.11E-02
111GO:0020037: heme binding2.26E-02
112GO:0022891: substrate-specific transmembrane transporter activity2.56E-02
113GO:0016874: ligase activity2.64E-02
114GO:0003723: RNA binding2.65E-02
115GO:0047134: protein-disulfide reductase activity2.87E-02
116GO:0004812: aminoacyl-tRNA ligase activity2.87E-02
117GO:0004871: signal transducer activity3.31E-02
118GO:0004791: thioredoxin-disulfide reductase activity3.37E-02
119GO:0005355: glucose transmembrane transporter activity3.37E-02
120GO:0050662: coenzyme binding3.37E-02
121GO:0019901: protein kinase binding3.55E-02
122GO:0048038: quinone binding3.72E-02
123GO:0004518: nuclease activity3.90E-02
124GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.08E-02
125GO:0000156: phosphorelay response regulator activity4.08E-02
126GO:0016791: phosphatase activity4.27E-02
127GO:0005507: copper ion binding4.45E-02
128GO:0008237: metallopeptidase activity4.45E-02
129GO:0051213: dioxygenase activity4.83E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast7.41E-63
4GO:0009535: chloroplast thylakoid membrane6.15E-36
5GO:0009534: chloroplast thylakoid5.19E-28
6GO:0009570: chloroplast stroma7.17E-25
7GO:0009941: chloroplast envelope5.40E-21
8GO:0009579: thylakoid9.26E-13
9GO:0009543: chloroplast thylakoid lumen2.03E-11
10GO:0031977: thylakoid lumen3.52E-09
11GO:0010287: plastoglobule7.76E-09
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.48E-07
13GO:0031969: chloroplast membrane5.98E-05
14GO:0030095: chloroplast photosystem II1.04E-04
15GO:0009533: chloroplast stromal thylakoid3.27E-04
16GO:0031361: integral component of thylakoid membrane3.67E-04
17GO:0009515: granal stacked thylakoid3.67E-04
18GO:0009501: amyloplast4.09E-04
19GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.01E-04
20GO:0080085: signal recognition particle, chloroplast targeting8.00E-04
21GO:0009706: chloroplast inner membrane1.01E-03
22GO:0009897: external side of plasma membrane1.29E-03
23GO:0033281: TAT protein transport complex1.29E-03
24GO:0010007: magnesium chelatase complex1.29E-03
25GO:0016021: integral component of membrane1.37E-03
26GO:0009654: photosystem II oxygen evolving complex2.11E-03
27GO:0042651: thylakoid membrane2.11E-03
28GO:0009526: plastid envelope2.51E-03
29GO:0055035: plastid thylakoid membrane3.21E-03
30GO:0009523: photosystem II4.39E-03
31GO:0019898: extrinsic component of membrane4.39E-03
32GO:0016020: membrane4.42E-03
33GO:0008180: COP9 signalosome8.54E-03
34GO:0032040: small-subunit processome1.31E-02
35GO:0009508: plastid chromosome1.43E-02
36GO:0030076: light-harvesting complex1.69E-02
37GO:0009522: photosystem I3.37E-02
38GO:0009536: plastid3.81E-02
39GO:0010319: stromule4.45E-02
40GO:0009295: nucleoid4.45E-02
41GO:0030529: intracellular ribonucleoprotein complex4.83E-02
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Gene type



Gene DE type