GO Enrichment Analysis of Co-expressed Genes with
AT2G21370
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 2 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 5 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 6 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 7 | GO:0017038: protein import | 0.00E+00 |
| 8 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 9 | GO:0009773: photosynthetic electron transport in photosystem I | 1.45E-07 |
| 10 | GO:0015979: photosynthesis | 2.60E-07 |
| 11 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.59E-06 |
| 12 | GO:0006000: fructose metabolic process | 5.87E-06 |
| 13 | GO:0010027: thylakoid membrane organization | 1.40E-05 |
| 14 | GO:0010109: regulation of photosynthesis | 2.51E-05 |
| 15 | GO:0015994: chlorophyll metabolic process | 2.51E-05 |
| 16 | GO:1901259: chloroplast rRNA processing | 8.36E-05 |
| 17 | GO:0019252: starch biosynthetic process | 1.33E-04 |
| 18 | GO:0006002: fructose 6-phosphate metabolic process | 1.78E-04 |
| 19 | GO:1904964: positive regulation of phytol biosynthetic process | 1.82E-04 |
| 20 | GO:0065002: intracellular protein transmembrane transport | 1.82E-04 |
| 21 | GO:0006106: fumarate metabolic process | 1.82E-04 |
| 22 | GO:0010028: xanthophyll cycle | 1.82E-04 |
| 23 | GO:0034337: RNA folding | 1.82E-04 |
| 24 | GO:0006430: lysyl-tRNA aminoacylation | 1.82E-04 |
| 25 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.82E-04 |
| 26 | GO:0043953: protein transport by the Tat complex | 1.82E-04 |
| 27 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.82E-04 |
| 28 | GO:0010205: photoinhibition | 2.59E-04 |
| 29 | GO:0005983: starch catabolic process | 4.06E-04 |
| 30 | GO:0016122: xanthophyll metabolic process | 4.10E-04 |
| 31 | GO:0010289: homogalacturonan biosynthetic process | 4.10E-04 |
| 32 | GO:0010270: photosystem II oxygen evolving complex assembly | 4.10E-04 |
| 33 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.10E-04 |
| 34 | GO:0035304: regulation of protein dephosphorylation | 4.10E-04 |
| 35 | GO:0080005: photosystem stoichiometry adjustment | 4.10E-04 |
| 36 | GO:0018026: peptidyl-lysine monomethylation | 4.10E-04 |
| 37 | GO:0006094: gluconeogenesis | 4.63E-04 |
| 38 | GO:0005986: sucrose biosynthetic process | 4.63E-04 |
| 39 | GO:0010207: photosystem II assembly | 5.21E-04 |
| 40 | GO:0051604: protein maturation | 6.69E-04 |
| 41 | GO:1902448: positive regulation of shade avoidance | 6.69E-04 |
| 42 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 6.69E-04 |
| 43 | GO:0090391: granum assembly | 6.69E-04 |
| 44 | GO:0006518: peptide metabolic process | 6.69E-04 |
| 45 | GO:0006418: tRNA aminoacylation for protein translation | 7.90E-04 |
| 46 | GO:0009152: purine ribonucleotide biosynthetic process | 9.55E-04 |
| 47 | GO:0046653: tetrahydrofolate metabolic process | 9.55E-04 |
| 48 | GO:0010239: chloroplast mRNA processing | 9.55E-04 |
| 49 | GO:0010088: phloem development | 9.55E-04 |
| 50 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 9.55E-04 |
| 51 | GO:0009735: response to cytokinin | 1.14E-03 |
| 52 | GO:0010021: amylopectin biosynthetic process | 1.27E-03 |
| 53 | GO:0009765: photosynthesis, light harvesting | 1.27E-03 |
| 54 | GO:0006109: regulation of carbohydrate metabolic process | 1.27E-03 |
| 55 | GO:0045727: positive regulation of translation | 1.27E-03 |
| 56 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.61E-03 |
| 57 | GO:0032543: mitochondrial translation | 1.61E-03 |
| 58 | GO:0042549: photosystem II stabilization | 1.98E-03 |
| 59 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.98E-03 |
| 60 | GO:0016554: cytidine to uridine editing | 1.98E-03 |
| 61 | GO:0006828: manganese ion transport | 1.98E-03 |
| 62 | GO:0010019: chloroplast-nucleus signaling pathway | 2.38E-03 |
| 63 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.80E-03 |
| 64 | GO:0010196: nonphotochemical quenching | 2.80E-03 |
| 65 | GO:0010492: maintenance of shoot apical meristem identity | 3.24E-03 |
| 66 | GO:0005978: glycogen biosynthetic process | 3.24E-03 |
| 67 | GO:0009642: response to light intensity | 3.24E-03 |
| 68 | GO:0006353: DNA-templated transcription, termination | 3.24E-03 |
| 69 | GO:0006605: protein targeting | 3.24E-03 |
| 70 | GO:0009631: cold acclimation | 3.70E-03 |
| 71 | GO:0032544: plastid translation | 3.71E-03 |
| 72 | GO:0071482: cellular response to light stimulus | 3.71E-03 |
| 73 | GO:0006754: ATP biosynthetic process | 4.20E-03 |
| 74 | GO:0000373: Group II intron splicing | 4.20E-03 |
| 75 | GO:0048507: meristem development | 4.20E-03 |
| 76 | GO:0010206: photosystem II repair | 4.20E-03 |
| 77 | GO:0034599: cellular response to oxidative stress | 4.23E-03 |
| 78 | GO:0009638: phototropism | 4.71E-03 |
| 79 | GO:1900865: chloroplast RNA modification | 4.71E-03 |
| 80 | GO:0009750: response to fructose | 5.79E-03 |
| 81 | GO:0046856: phosphatidylinositol dephosphorylation | 5.79E-03 |
| 82 | GO:0006816: calcium ion transport | 5.79E-03 |
| 83 | GO:0019684: photosynthesis, light reaction | 5.79E-03 |
| 84 | GO:0009073: aromatic amino acid family biosynthetic process | 5.79E-03 |
| 85 | GO:0043085: positive regulation of catalytic activity | 5.79E-03 |
| 86 | GO:0006108: malate metabolic process | 6.94E-03 |
| 87 | GO:0009785: blue light signaling pathway | 6.94E-03 |
| 88 | GO:0010628: positive regulation of gene expression | 6.94E-03 |
| 89 | GO:0006364: rRNA processing | 7.02E-03 |
| 90 | GO:0019253: reductive pentose-phosphate cycle | 7.55E-03 |
| 91 | GO:0005985: sucrose metabolic process | 8.18E-03 |
| 92 | GO:0071732: cellular response to nitric oxide | 8.18E-03 |
| 93 | GO:0010025: wax biosynthetic process | 8.82E-03 |
| 94 | GO:0006636: unsaturated fatty acid biosynthetic process | 8.82E-03 |
| 95 | GO:0005975: carbohydrate metabolic process | 9.50E-03 |
| 96 | GO:0008299: isoprenoid biosynthetic process | 1.02E-02 |
| 97 | GO:0035428: hexose transmembrane transport | 1.16E-02 |
| 98 | GO:0016226: iron-sulfur cluster assembly | 1.16E-02 |
| 99 | GO:0071369: cellular response to ethylene stimulus | 1.23E-02 |
| 100 | GO:0009686: gibberellin biosynthetic process | 1.23E-02 |
| 101 | GO:0008152: metabolic process | 1.26E-02 |
| 102 | GO:0010089: xylem development | 1.31E-02 |
| 103 | GO:0015991: ATP hydrolysis coupled proton transport | 1.46E-02 |
| 104 | GO:0055114: oxidation-reduction process | 1.46E-02 |
| 105 | GO:0006662: glycerol ether metabolic process | 1.54E-02 |
| 106 | GO:0046323: glucose import | 1.54E-02 |
| 107 | GO:0010268: brassinosteroid homeostasis | 1.54E-02 |
| 108 | GO:0009646: response to absence of light | 1.62E-02 |
| 109 | GO:0009451: RNA modification | 1.78E-02 |
| 110 | GO:0016132: brassinosteroid biosynthetic process | 1.79E-02 |
| 111 | GO:0000302: response to reactive oxygen species | 1.79E-02 |
| 112 | GO:0016032: viral process | 1.87E-02 |
| 113 | GO:1901657: glycosyl compound metabolic process | 1.96E-02 |
| 114 | GO:0071281: cellular response to iron ion | 1.96E-02 |
| 115 | GO:0010090: trichome morphogenesis | 1.96E-02 |
| 116 | GO:0007166: cell surface receptor signaling pathway | 1.99E-02 |
| 117 | GO:0009567: double fertilization forming a zygote and endosperm | 2.05E-02 |
| 118 | GO:0016125: sterol metabolic process | 2.05E-02 |
| 119 | GO:0042128: nitrate assimilation | 2.51E-02 |
| 120 | GO:0015995: chlorophyll biosynthetic process | 2.61E-02 |
| 121 | GO:0016311: dephosphorylation | 2.71E-02 |
| 122 | GO:0018298: protein-chromophore linkage | 2.81E-02 |
| 123 | GO:0048481: plant ovule development | 2.81E-02 |
| 124 | GO:0000160: phosphorelay signal transduction system | 2.91E-02 |
| 125 | GO:0055085: transmembrane transport | 3.10E-02 |
| 126 | GO:0006508: proteolysis | 3.15E-02 |
| 127 | GO:0016051: carbohydrate biosynthetic process | 3.32E-02 |
| 128 | GO:0009853: photorespiration | 3.32E-02 |
| 129 | GO:0006099: tricarboxylic acid cycle | 3.43E-02 |
| 130 | GO:0006631: fatty acid metabolic process | 3.76E-02 |
| 131 | GO:0045454: cell redox homeostasis | 3.98E-02 |
| 132 | GO:0006869: lipid transport | 4.36E-02 |
| 133 | GO:0009736: cytokinin-activated signaling pathway | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 2 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 3 | GO:0005048: signal sequence binding | 0.00E+00 |
| 4 | GO:0010303: limit dextrinase activity | 0.00E+00 |
| 5 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 6 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 7 | GO:0051060: pullulanase activity | 0.00E+00 |
| 8 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 9 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.59E-06 |
| 10 | GO:0005528: FK506 binding | 3.69E-05 |
| 11 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.82E-04 |
| 12 | GO:0004333: fumarate hydratase activity | 1.82E-04 |
| 13 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.82E-04 |
| 14 | GO:0004824: lysine-tRNA ligase activity | 1.82E-04 |
| 15 | GO:0010242: oxygen evolving activity | 1.82E-04 |
| 16 | GO:0045485: omega-6 fatty acid desaturase activity | 1.82E-04 |
| 17 | GO:0051777: ent-kaurenoate oxidase activity | 1.82E-04 |
| 18 | GO:0070006: metalloaminopeptidase activity | 1.82E-04 |
| 19 | GO:0047746: chlorophyllase activity | 4.10E-04 |
| 20 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 4.10E-04 |
| 21 | GO:0033201: alpha-1,4-glucan synthase activity | 4.10E-04 |
| 22 | GO:0016630: protochlorophyllide reductase activity | 4.10E-04 |
| 23 | GO:0008266: poly(U) RNA binding | 5.21E-04 |
| 24 | GO:0004751: ribose-5-phosphate isomerase activity | 6.69E-04 |
| 25 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 6.69E-04 |
| 26 | GO:0070402: NADPH binding | 6.69E-04 |
| 27 | GO:0008864: formyltetrahydrofolate deformylase activity | 6.69E-04 |
| 28 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 6.69E-04 |
| 29 | GO:0004373: glycogen (starch) synthase activity | 6.69E-04 |
| 30 | GO:0002161: aminoacyl-tRNA editing activity | 6.69E-04 |
| 31 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.01E-04 |
| 32 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 9.55E-04 |
| 33 | GO:0019201: nucleotide kinase activity | 9.55E-04 |
| 34 | GO:0004445: inositol-polyphosphate 5-phosphatase activity | 9.55E-04 |
| 35 | GO:0004812: aminoacyl-tRNA ligase activity | 1.20E-03 |
| 36 | GO:0016279: protein-lysine N-methyltransferase activity | 1.27E-03 |
| 37 | GO:0043495: protein anchor | 1.27E-03 |
| 38 | GO:0009011: starch synthase activity | 1.27E-03 |
| 39 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 1.27E-03 |
| 40 | GO:0003959: NADPH dehydrogenase activity | 1.61E-03 |
| 41 | GO:0016787: hydrolase activity | 1.71E-03 |
| 42 | GO:0019843: rRNA binding | 1.97E-03 |
| 43 | GO:0016688: L-ascorbate peroxidase activity | 1.98E-03 |
| 44 | GO:0004130: cytochrome-c peroxidase activity | 1.98E-03 |
| 45 | GO:0042578: phosphoric ester hydrolase activity | 1.98E-03 |
| 46 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 1.98E-03 |
| 47 | GO:0004556: alpha-amylase activity | 1.98E-03 |
| 48 | GO:0016491: oxidoreductase activity | 2.12E-03 |
| 49 | GO:0004017: adenylate kinase activity | 2.38E-03 |
| 50 | GO:0019899: enzyme binding | 2.80E-03 |
| 51 | GO:0008236: serine-type peptidase activity | 3.04E-03 |
| 52 | GO:0008312: 7S RNA binding | 3.24E-03 |
| 53 | GO:0004033: aldo-keto reductase (NADP) activity | 3.24E-03 |
| 54 | GO:0043022: ribosome binding | 3.24E-03 |
| 55 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 4.01E-03 |
| 56 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 4.20E-03 |
| 57 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 4.20E-03 |
| 58 | GO:0005384: manganese ion transmembrane transporter activity | 4.71E-03 |
| 59 | GO:0008047: enzyme activator activity | 5.24E-03 |
| 60 | GO:0004177: aminopeptidase activity | 5.79E-03 |
| 61 | GO:0005198: structural molecule activity | 5.85E-03 |
| 62 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 6.35E-03 |
| 63 | GO:0008233: peptidase activity | 6.63E-03 |
| 64 | GO:0015095: magnesium ion transmembrane transporter activity | 6.94E-03 |
| 65 | GO:0009982: pseudouridine synthase activity | 6.94E-03 |
| 66 | GO:0004565: beta-galactosidase activity | 6.94E-03 |
| 67 | GO:0004022: alcohol dehydrogenase (NAD) activity | 6.94E-03 |
| 68 | GO:0003729: mRNA binding | 9.18E-03 |
| 69 | GO:0051536: iron-sulfur cluster binding | 9.48E-03 |
| 70 | GO:0004857: enzyme inhibitor activity | 9.48E-03 |
| 71 | GO:0004176: ATP-dependent peptidase activity | 1.09E-02 |
| 72 | GO:0003723: RNA binding | 1.11E-02 |
| 73 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.16E-02 |
| 74 | GO:0022891: substrate-specific transmembrane transporter activity | 1.23E-02 |
| 75 | GO:0047134: protein-disulfide reductase activity | 1.38E-02 |
| 76 | GO:0004791: thioredoxin-disulfide reductase activity | 1.62E-02 |
| 77 | GO:0016853: isomerase activity | 1.62E-02 |
| 78 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.62E-02 |
| 79 | GO:0010181: FMN binding | 1.62E-02 |
| 80 | GO:0005355: glucose transmembrane transporter activity | 1.62E-02 |
| 81 | GO:0050662: coenzyme binding | 1.62E-02 |
| 82 | GO:0019901: protein kinase binding | 1.70E-02 |
| 83 | GO:0004518: nuclease activity | 1.87E-02 |
| 84 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.96E-02 |
| 85 | GO:0000156: phosphorelay response regulator activity | 1.96E-02 |
| 86 | GO:0005524: ATP binding | 2.42E-02 |
| 87 | GO:0016168: chlorophyll binding | 2.42E-02 |
| 88 | GO:0102483: scopolin beta-glucosidase activity | 2.61E-02 |
| 89 | GO:0004721: phosphoprotein phosphatase activity | 2.61E-02 |
| 90 | GO:0000287: magnesium ion binding | 2.64E-02 |
| 91 | GO:0004222: metalloendopeptidase activity | 3.01E-02 |
| 92 | GO:0030145: manganese ion binding | 3.11E-02 |
| 93 | GO:0003746: translation elongation factor activity | 3.32E-02 |
| 94 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 3.54E-02 |
| 95 | GO:0008422: beta-glucosidase activity | 3.54E-02 |
| 96 | GO:0043621: protein self-association | 4.21E-02 |
| 97 | GO:0005525: GTP binding | 4.26E-02 |
| 98 | GO:0005509: calcium ion binding | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043235: receptor complex | 0.00E+00 |
| 2 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 4.01E-45 |
| 4 | GO:0009534: chloroplast thylakoid | 1.61E-23 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.59E-22 |
| 6 | GO:0009570: chloroplast stroma | 1.97E-21 |
| 7 | GO:0009941: chloroplast envelope | 2.29E-15 |
| 8 | GO:0009579: thylakoid | 5.10E-10 |
| 9 | GO:0031977: thylakoid lumen | 2.35E-09 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 3.01E-09 |
| 11 | GO:0010287: plastoglobule | 2.58E-05 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 4.33E-05 |
| 13 | GO:0019898: extrinsic component of membrane | 1.33E-04 |
| 14 | GO:0045239: tricarboxylic acid cycle enzyme complex | 1.82E-04 |
| 15 | GO:0031361: integral component of thylakoid membrane | 1.82E-04 |
| 16 | GO:0009515: granal stacked thylakoid | 1.82E-04 |
| 17 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.17E-04 |
| 18 | GO:0080085: signal recognition particle, chloroplast targeting | 4.10E-04 |
| 19 | GO:0030095: chloroplast photosystem II | 5.21E-04 |
| 20 | GO:0033281: TAT protein transport complex | 6.69E-04 |
| 21 | GO:0009526: plastid envelope | 1.27E-03 |
| 22 | GO:0031969: chloroplast membrane | 1.31E-03 |
| 23 | GO:0055035: plastid thylakoid membrane | 1.61E-03 |
| 24 | GO:0009501: amyloplast | 3.24E-03 |
| 25 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 3.71E-03 |
| 26 | GO:0032040: small-subunit processome | 6.35E-03 |
| 27 | GO:0042651: thylakoid membrane | 1.02E-02 |
| 28 | GO:0009532: plastid stroma | 1.09E-02 |
| 29 | GO:0009522: photosystem I | 1.62E-02 |
| 30 | GO:0009523: photosystem II | 1.70E-02 |
| 31 | GO:0010319: stromule | 2.14E-02 |
| 32 | GO:0030529: intracellular ribonucleoprotein complex | 2.32E-02 |