Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G21170

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0042407: cristae formation0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0010394: homogalacturonan metabolic process0.00E+00
8GO:0006399: tRNA metabolic process0.00E+00
9GO:0070125: mitochondrial translational elongation0.00E+00
10GO:0006633: fatty acid biosynthetic process1.61E-07
11GO:0006412: translation1.96E-07
12GO:0032544: plastid translation3.13E-06
13GO:0006546: glycine catabolic process2.40E-05
14GO:0015979: photosynthesis3.78E-05
15GO:0042549: photosystem II stabilization5.77E-05
16GO:0000413: protein peptidyl-prolyl isomerization9.17E-05
17GO:0006457: protein folding9.27E-05
18GO:0042254: ribosome biogenesis1.49E-04
19GO:0071588: hydrogen peroxide mediated signaling pathway1.77E-04
20GO:0043489: RNA stabilization1.77E-04
21GO:1904966: positive regulation of vitamin E biosynthetic process1.77E-04
22GO:1904964: positive regulation of phytol biosynthetic process1.77E-04
23GO:0045488: pectin metabolic process1.77E-04
24GO:0009735: response to cytokinin2.27E-04
25GO:0045454: cell redox homeostasis3.11E-04
26GO:0043085: positive regulation of catalytic activity3.42E-04
27GO:0006695: cholesterol biosynthetic process4.01E-04
28GO:1902326: positive regulation of chlorophyll biosynthetic process4.01E-04
29GO:0006423: cysteinyl-tRNA aminoacylation4.01E-04
30GO:0071258: cellular response to gravity4.01E-04
31GO:0006568: tryptophan metabolic process4.01E-04
32GO:0010020: chloroplast fission5.04E-04
33GO:0010207: photosystem II assembly5.04E-04
34GO:0010581: regulation of starch biosynthetic process6.55E-04
35GO:0006696: ergosterol biosynthetic process6.55E-04
36GO:2001295: malonyl-CoA biosynthetic process6.55E-04
37GO:0019344: cysteine biosynthetic process6.94E-04
38GO:0009658: chloroplast organization9.02E-04
39GO:0051085: chaperone mediated protein folding requiring cofactor9.34E-04
40GO:0006241: CTP biosynthetic process9.34E-04
41GO:0006165: nucleoside diphosphate phosphorylation9.34E-04
42GO:0006228: UTP biosynthetic process9.34E-04
43GO:0010088: phloem development9.34E-04
44GO:0016556: mRNA modification9.34E-04
45GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis9.34E-04
46GO:2001141: regulation of RNA biosynthetic process9.34E-04
47GO:0006085: acetyl-CoA biosynthetic process1.24E-03
48GO:0006183: GTP biosynthetic process1.24E-03
49GO:0044206: UMP salvage1.24E-03
50GO:0051781: positive regulation of cell division1.24E-03
51GO:0042335: cuticle development1.25E-03
52GO:0045489: pectin biosynthetic process1.35E-03
53GO:0043097: pyrimidine nucleoside salvage1.57E-03
54GO:0010236: plastoquinone biosynthetic process1.57E-03
55GO:0009107: lipoate biosynthetic process1.57E-03
56GO:0006555: methionine metabolic process1.94E-03
57GO:0006206: pyrimidine nucleobase metabolic process1.94E-03
58GO:0006014: D-ribose metabolic process1.94E-03
59GO:0042026: protein refolding2.32E-03
60GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2.32E-03
61GO:0030488: tRNA methylation2.32E-03
62GO:0010189: vitamin E biosynthetic process2.32E-03
63GO:0009854: oxidative photosynthetic carbon pathway2.32E-03
64GO:0010019: chloroplast-nucleus signaling pathway2.32E-03
65GO:0010555: response to mannitol2.32E-03
66GO:0006400: tRNA modification2.74E-03
67GO:0018298: protein-chromophore linkage3.09E-03
68GO:0007155: cell adhesion3.17E-03
69GO:0009642: response to light intensity3.17E-03
70GO:0009631: cold acclimation3.57E-03
71GO:0071482: cellular response to light stimulus3.63E-03
72GO:0010233: phloem transport3.63E-03
73GO:0019430: removal of superoxide radicals3.63E-03
74GO:0009657: plastid organization3.63E-03
75GO:0016051: carbohydrate biosynthetic process3.91E-03
76GO:0009637: response to blue light3.91E-03
77GO:0034599: cellular response to oxidative stress4.09E-03
78GO:0045337: farnesyl diphosphate biosynthetic process4.10E-03
79GO:0033384: geranyl diphosphate biosynthetic process4.10E-03
80GO:0043067: regulation of programmed cell death4.60E-03
81GO:0035999: tetrahydrofolate interconversion4.60E-03
82GO:0010380: regulation of chlorophyll biosynthetic process4.60E-03
83GO:0042761: very long-chain fatty acid biosynthetic process4.60E-03
84GO:0010114: response to red light5.03E-03
85GO:0006535: cysteine biosynthetic process from serine5.11E-03
86GO:0048829: root cap development5.11E-03
87GO:0045036: protein targeting to chloroplast5.11E-03
88GO:0009773: photosynthetic electron transport in photosystem I5.65E-03
89GO:0009073: aromatic amino acid family biosynthetic process5.65E-03
90GO:0006415: translational termination5.65E-03
91GO:0006352: DNA-templated transcription, initiation5.65E-03
92GO:0018119: peptidyl-cysteine S-nitrosylation5.65E-03
93GO:0009793: embryo development ending in seed dormancy6.02E-03
94GO:0009409: response to cold7.34E-03
95GO:0019253: reductive pentose-phosphate cycle7.37E-03
96GO:0006096: glycolytic process8.02E-03
97GO:0010025: wax biosynthetic process8.61E-03
98GO:0009116: nucleoside metabolic process9.26E-03
99GO:0008299: isoprenoid biosynthetic process9.92E-03
100GO:0006418: tRNA aminoacylation for protein translation9.92E-03
101GO:0007017: microtubule-based process9.92E-03
102GO:0009768: photosynthesis, light harvesting in photosystem I9.92E-03
103GO:0006396: RNA processing9.95E-03
104GO:0003333: amino acid transmembrane transport1.06E-02
105GO:0006730: one-carbon metabolic process1.13E-02
106GO:0007005: mitochondrion organization1.13E-02
107GO:0009411: response to UV1.20E-02
108GO:0040007: growth1.20E-02
109GO:0008152: metabolic process1.21E-02
110GO:0016117: carotenoid biosynthetic process1.35E-02
111GO:0042744: hydrogen peroxide catabolic process1.38E-02
112GO:0000271: polysaccharide biosynthetic process1.43E-02
113GO:0010051: xylem and phloem pattern formation1.43E-02
114GO:0010305: leaf vascular tissue pattern formation1.50E-02
115GO:0006662: glycerol ether metabolic process1.50E-02
116GO:0010197: polar nucleus fusion1.50E-02
117GO:0042742: defense response to bacterium1.56E-02
118GO:0007018: microtubule-based movement1.58E-02
119GO:0009734: auxin-activated signaling pathway1.64E-02
120GO:0019252: starch biosynthetic process1.66E-02
121GO:0009451: RNA modification1.71E-02
122GO:0000302: response to reactive oxygen species1.75E-02
123GO:0010583: response to cyclopentenone1.83E-02
124GO:0032502: developmental process1.83E-02
125GO:0010027: thylakoid membrane organization2.27E-02
126GO:0042128: nitrate assimilation2.45E-02
127GO:0009627: systemic acquired resistance2.45E-02
128GO:0015995: chlorophyll biosynthetic process2.55E-02
129GO:0055114: oxidation-reduction process2.71E-02
130GO:0048481: plant ovule development2.74E-02
131GO:0008219: cell death2.74E-02
132GO:0009407: toxin catabolic process2.94E-02
133GO:0010218: response to far red light2.94E-02
134GO:0006865: amino acid transport3.14E-02
135GO:0009853: photorespiration3.24E-02
136GO:0045087: innate immune response3.24E-02
137GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.33E-02
138GO:0006631: fatty acid metabolic process3.67E-02
139GO:0042542: response to hydrogen peroxide3.78E-02
140GO:0006869: lipid transport4.21E-02
141GO:0009636: response to toxic substance4.22E-02
142GO:0006629: lipid metabolic process4.73E-02
143GO:0009585: red, far-red light phototransduction4.80E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
3GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
4GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
5GO:0008887: glycerate kinase activity0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
8GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
9GO:0046905: phytoene synthase activity0.00E+00
10GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
11GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
12GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
13GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
14GO:0019843: rRNA binding1.33E-15
15GO:0003735: structural constituent of ribosome3.84E-09
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.54E-06
17GO:0051920: peroxiredoxin activity8.05E-05
18GO:0016209: antioxidant activity1.37E-04
19GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.69E-04
20GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity1.77E-04
21GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer1.77E-04
22GO:0004425: indole-3-glycerol-phosphate synthase activity1.77E-04
23GO:0051996: squalene synthase activity1.77E-04
24GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity1.77E-04
25GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity1.77E-04
26GO:0008047: enzyme activator activity2.95E-04
27GO:0004047: aminomethyltransferase activity4.01E-04
28GO:0004817: cysteine-tRNA ligase activity4.01E-04
29GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity4.01E-04
30GO:0004310: farnesyl-diphosphate farnesyltransferase activity4.01E-04
31GO:0050017: L-3-cyanoalanine synthase activity4.01E-04
32GO:0004618: phosphoglycerate kinase activity4.01E-04
33GO:0008266: poly(U) RNA binding5.04E-04
34GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity6.55E-04
35GO:0016992: lipoate synthase activity6.55E-04
36GO:0002161: aminoacyl-tRNA editing activity6.55E-04
37GO:0004148: dihydrolipoyl dehydrogenase activity6.55E-04
38GO:0004075: biotin carboxylase activity6.55E-04
39GO:0030267: glyoxylate reductase (NADP) activity6.55E-04
40GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity6.55E-04
41GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity6.55E-04
42GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity9.34E-04
43GO:0003878: ATP citrate synthase activity9.34E-04
44GO:0016149: translation release factor activity, codon specific9.34E-04
45GO:0004550: nucleoside diphosphate kinase activity9.34E-04
46GO:0008097: 5S rRNA binding9.34E-04
47GO:0016836: hydro-lyase activity1.24E-03
48GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.24E-03
49GO:0016987: sigma factor activity1.24E-03
50GO:0010328: auxin influx transmembrane transporter activity1.24E-03
51GO:0043495: protein anchor1.24E-03
52GO:0004659: prenyltransferase activity1.24E-03
53GO:0001053: plastid sigma factor activity1.24E-03
54GO:0004845: uracil phosphoribosyltransferase activity1.24E-03
55GO:0004791: thioredoxin-disulfide reductase activity1.44E-03
56GO:0016773: phosphotransferase activity, alcohol group as acceptor1.57E-03
57GO:0003989: acetyl-CoA carboxylase activity1.57E-03
58GO:0004130: cytochrome-c peroxidase activity1.94E-03
59GO:0016688: L-ascorbate peroxidase activity1.94E-03
60GO:0005200: structural constituent of cytoskeleton2.12E-03
61GO:0102391: decanoate--CoA ligase activity2.32E-03
62GO:0004747: ribokinase activity2.32E-03
63GO:0004849: uridine kinase activity2.32E-03
64GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.32E-03
65GO:0004124: cysteine synthase activity2.32E-03
66GO:0016168: chlorophyll binding2.51E-03
67GO:0003729: mRNA binding2.53E-03
68GO:0016831: carboxy-lyase activity2.74E-03
69GO:0019899: enzyme binding2.74E-03
70GO:0004467: long-chain fatty acid-CoA ligase activity2.74E-03
71GO:0004033: aldo-keto reductase (NADP) activity3.17E-03
72GO:0008865: fructokinase activity3.17E-03
73GO:0008173: RNA methyltransferase activity3.63E-03
74GO:0042802: identical protein binding3.84E-03
75GO:0004337: geranyltranstransferase activity4.10E-03
76GO:0003747: translation release factor activity4.10E-03
77GO:0047617: acyl-CoA hydrolase activity4.60E-03
78GO:0043621: protein self-association5.44E-03
79GO:0051537: 2 iron, 2 sulfur cluster binding5.44E-03
80GO:0044183: protein binding involved in protein folding5.65E-03
81GO:0004161: dimethylallyltranstransferase activity5.65E-03
82GO:0000049: tRNA binding6.20E-03
83GO:0031072: heat shock protein binding6.78E-03
84GO:0016740: transferase activity7.26E-03
85GO:0031409: pigment binding8.61E-03
86GO:0042803: protein homodimerization activity8.65E-03
87GO:0051082: unfolded protein binding9.66E-03
88GO:0003723: RNA binding1.02E-02
89GO:0004176: ATP-dependent peptidase activity1.06E-02
90GO:0003924: GTPase activity1.06E-02
91GO:0019706: protein-cysteine S-palmitoyltransferase activity1.06E-02
92GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.13E-02
93GO:0005525: GTP binding1.14E-02
94GO:0022891: substrate-specific transmembrane transporter activity1.20E-02
95GO:0003727: single-stranded RNA binding1.27E-02
96GO:0047134: protein-disulfide reductase activity1.35E-02
97GO:0004812: aminoacyl-tRNA ligase activity1.35E-02
98GO:0050662: coenzyme binding1.58E-02
99GO:0008483: transaminase activity2.09E-02
100GO:0008237: metallopeptidase activity2.09E-02
101GO:0004601: peroxidase activity2.60E-02
102GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.64E-02
103GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.74E-02
104GO:0004222: metalloendopeptidase activity2.94E-02
105GO:0003746: translation elongation factor activity3.24E-02
106GO:0051539: 4 iron, 4 sulfur cluster binding3.56E-02
107GO:0004364: glutathione transferase activity3.78E-02
108GO:0005524: ATP binding3.85E-02
109GO:0005198: structural molecule activity4.22E-02
110GO:0015293: symporter activity4.22E-02
111GO:0046872: metal ion binding4.29E-02
112GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.80E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009507: chloroplast2.13E-53
3GO:0009570: chloroplast stroma1.01E-46
4GO:0009941: chloroplast envelope4.51E-41
5GO:0009579: thylakoid3.49E-15
6GO:0009535: chloroplast thylakoid membrane6.33E-12
7GO:0031977: thylakoid lumen2.07E-09
8GO:0009534: chloroplast thylakoid6.58E-09
9GO:0005840: ribosome1.05E-08
10GO:0009543: chloroplast thylakoid lumen7.11E-08
11GO:0010319: stromule1.02E-05
12GO:0000311: plastid large ribosomal subunit1.32E-05
13GO:0000312: plastid small ribosomal subunit2.03E-05
14GO:0009654: photosystem II oxygen evolving complex4.11E-05
15GO:0009547: plastid ribosome1.77E-04
16GO:0045298: tubulin complex2.09E-04
17GO:0022626: cytosolic ribosome2.50E-04
18GO:0042651: thylakoid membrane7.64E-04
19GO:0009346: citrate lyase complex9.34E-04
20GO:0016020: membrane1.02E-03
21GO:0009523: photosystem II1.55E-03
22GO:0019898: extrinsic component of membrane1.55E-03
23GO:0009539: photosystem II reaction center3.63E-03
24GO:0022627: cytosolic small ribosomal subunit4.05E-03
25GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.10E-03
26GO:0048046: apoplast5.03E-03
27GO:0009536: plastid6.17E-03
28GO:0030095: chloroplast photosystem II7.37E-03
29GO:0030659: cytoplasmic vesicle membrane7.37E-03
30GO:0030076: light-harvesting complex7.98E-03
31GO:0009706: chloroplast inner membrane9.66E-03
32GO:0015935: small ribosomal subunit1.06E-02
33GO:0009532: plastid stroma1.06E-02
34GO:0010287: plastoglobule1.15E-02
35GO:0005871: kinesin complex1.35E-02
36GO:0005759: mitochondrial matrix1.52E-02
37GO:0009522: photosystem I1.58E-02
38GO:0009295: nucleoid2.09E-02
39GO:0046658: anchored component of plasma membrane2.22E-02
40GO:0030529: intracellular ribonucleoprotein complex2.27E-02
41GO:0009707: chloroplast outer membrane2.74E-02
42GO:0015934: large ribosomal subunit3.04E-02
43GO:0005874: microtubule3.11E-02
44GO:0031969: chloroplast membrane3.22E-02
45GO:0022625: cytosolic large ribosomal subunit3.38E-02
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Gene type



Gene DE type