co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G20960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
2	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
3	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
4	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	4.60E-05
5	GO:0007292: female gamete generation	4.60E-05
6	GO:0031338: regulation of vesicle fusion	4.60E-05
7	GO:0035266: meristem growth	4.60E-05
8	GO:0050684: regulation of mRNA processing	1.13E-04
9	GO:0050994: regulation of lipid catabolic process	1.13E-04
10	GO:0051788: response to misfolded protein	1.13E-04
11	GO:0030003: cellular cation homeostasis	1.13E-04
12	GO:0009727: detection of ethylene stimulus	1.13E-04
13	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	1.95E-04
14	GO:0060968: regulation of gene silencing	1.95E-04
15	GO:0032784: regulation of DNA-templated transcription, elongation	1.95E-04
16	GO:1900140: regulation of seedling development	1.95E-04
17	GO:0090630: activation of GTPase activity	1.95E-04
18	GO:2001289: lipid X metabolic process	2.85E-04
19	GO:0072334: UDP-galactose transmembrane transport	2.85E-04
20	GO:0015749: monosaccharide transport	2.85E-04
21	GO:0006624: vacuolar protein processing	2.85E-04
22	GO:0006635: fatty acid beta-oxidation	2.87E-04
23	GO:0015743: malate transport	3.84E-04
24	GO:0000380: alternative mRNA splicing, via spliceosome	4.88E-04
25	GO:0006090: pyruvate metabolic process	4.88E-04
26	GO:0048232: male gamete generation	5.98E-04
27	GO:0043248: proteasome assembly	5.98E-04
28	GO:0035194: posttranscriptional gene silencing by RNA	5.98E-04
29	GO:0050665: hydrogen peroxide biosynthetic process	5.98E-04
30	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	5.98E-04
31	GO:0048827: phyllome development	5.98E-04
32	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	5.98E-04
33	GO:0009737: response to abscisic acid	6.47E-04
34	GO:0045087: innate immune response	6.76E-04
35	GO:0098869: cellular oxidant detoxification	8.33E-04
36	GO:0009395: phospholipid catabolic process	8.33E-04
37	GO:0006333: chromatin assembly or disassembly	8.33E-04
38	GO:0010044: response to aluminum ion	8.33E-04
39	GO:0006491: N-glycan processing	9.57E-04
40	GO:0009690: cytokinin metabolic process	9.57E-04
41	GO:0010078: maintenance of root meristem identity	9.57E-04
42	GO:0030968: endoplasmic reticulum unfolded protein response	1.09E-03
43	GO:0009808: lignin metabolic process	1.09E-03
44	GO:0009051: pentose-phosphate shunt, oxidative branch	1.22E-03
45	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.36E-03
46	GO:0048367: shoot system development	1.38E-03
47	GO:0048829: root cap development	1.51E-03
48	GO:0010015: root morphogenesis	1.66E-03
49	GO:0006816: calcium ion transport	1.66E-03
50	GO:0052544: defense response by callose deposition in cell wall	1.66E-03
51	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.81E-03
52	GO:0006108: malate metabolic process	1.98E-03
53	GO:0002237: response to molecule of bacterial origin	2.14E-03
54	GO:0009933: meristem structural organization	2.14E-03
55	GO:0007034: vacuolar transport	2.14E-03
56	GO:0090351: seedling development	2.31E-03
57	GO:0006874: cellular calcium ion homeostasis	2.85E-03
58	GO:0051260: protein homooligomerization	3.04E-03
59	GO:0030433: ubiquitin-dependent ERAD pathway	3.23E-03
60	GO:0071215: cellular response to abscisic acid stimulus	3.43E-03
61	GO:0001944: vasculature development	3.43E-03
62	GO:0009625: response to insect	3.43E-03
63	GO:0042631: cellular response to water deprivation	4.04E-03
64	GO:0010182: sugar mediated signaling pathway	4.25E-03
65	GO:0046323: glucose import	4.25E-03
66	GO:0006814: sodium ion transport	4.47E-03
67	GO:0009723: response to ethylene	4.86E-03
68	GO:0071281: cellular response to iron ion	5.37E-03
69	GO:0016192: vesicle-mediated transport	5.48E-03
70	GO:0009651: response to salt stress	6.08E-03
71	GO:0001666: response to hypoxia	6.32E-03
72	GO:0010029: regulation of seed germination	6.57E-03
73	GO:0009816: defense response to bacterium, incompatible interaction	6.57E-03
74	GO:0048573: photoperiodism, flowering	7.08E-03
75	GO:0006950: response to stress	7.08E-03
76	GO:0009751: response to salicylic acid	7.57E-03
77	GO:0009408: response to heat	7.68E-03
78	GO:0010311: lateral root formation	7.87E-03
79	GO:0048364: root development	8.02E-03
80	GO:0006811: ion transport	8.14E-03
81	GO:0006499: N-terminal protein myristoylation	8.14E-03
82	GO:0010119: regulation of stomatal movement	8.41E-03
83	GO:0010043: response to zinc ion	8.41E-03
84	GO:0006099: tricarboxylic acid cycle	9.25E-03
85	GO:0046686: response to cadmium ion	9.34E-03
86	GO:0009636: response to toxic substance	1.16E-02
87	GO:0009965: leaf morphogenesis	1.16E-02
88	GO:0006813: potassium ion transport	1.32E-02
89	GO:0051603: proteolysis involved in cellular protein catabolic process	1.35E-02
90	GO:0009626: plant-type hypersensitive response	1.56E-02
91	GO:0006396: RNA processing	1.73E-02
92	GO:0009742: brassinosteroid mediated signaling pathway	1.77E-02
93	GO:0006511: ubiquitin-dependent protein catabolic process	1.86E-02
94	GO:0009790: embryo development	2.22E-02
95	GO:0010150: leaf senescence	2.50E-02
96	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.71E-02
97	GO:0009739: response to gibberellin	2.71E-02
98	GO:0007166: cell surface receptor signaling pathway	2.75E-02
99	GO:0042742: defense response to bacterium	2.77E-02
100	GO:0008380: RNA splicing	2.84E-02
101	GO:0009733: response to auxin	3.11E-02
102	GO:0009409: response to cold	3.75E-02
103	GO:0046777: protein autophosphorylation	4.18E-02
104	GO:0044550: secondary metabolite biosynthetic process	4.23E-02
105	GO:0045454: cell redox homeostasis	4.52E-02
106	GO:0006886: intracellular protein transport	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0005272: sodium channel activity	0.00E+00
2	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
3	GO:0009679: hexose:proton symporter activity	4.60E-05
4	GO:0004112: cyclic-nucleotide phosphodiesterase activity	4.60E-05
5	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	4.60E-05
6	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	4.60E-05
7	GO:0038199: ethylene receptor activity	1.13E-04
8	GO:0047209: coniferyl-alcohol glucosyltransferase activity	1.13E-04
9	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	1.95E-04
10	GO:0004108: citrate (Si)-synthase activity	2.85E-04
11	GO:0030527: structural constituent of chromatin	2.85E-04
12	GO:0051740: ethylene binding	2.85E-04
13	GO:0004300: enoyl-CoA hydratase activity	2.85E-04
14	GO:0004737: pyruvate decarboxylase activity	3.84E-04
15	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	3.84E-04
16	GO:0004470: malic enzyme activity	3.84E-04
17	GO:0005253: anion channel activity	3.84E-04
18	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	3.84E-04
19	GO:0005459: UDP-galactose transmembrane transporter activity	4.88E-04
20	GO:0015145: monosaccharide transmembrane transporter activity	4.88E-04
21	GO:0008948: oxaloacetate decarboxylase activity	4.88E-04
22	GO:0017137: Rab GTPase binding	4.88E-04
23	GO:0005096: GTPase activator activity	5.65E-04
24	GO:0036402: proteasome-activating ATPase activity	5.98E-04
25	GO:0030976: thiamine pyrophosphate binding	5.98E-04
26	GO:0005261: cation channel activity	7.13E-04
27	GO:0004602: glutathione peroxidase activity	7.13E-04
28	GO:0016831: carboxy-lyase activity	8.33E-04
29	GO:0015140: malate transmembrane transporter activity	8.33E-04
30	GO:0005267: potassium channel activity	1.09E-03
31	GO:0004673: protein histidine kinase activity	1.51E-03
32	GO:0004521: endoribonuclease activity	1.81E-03
33	GO:0000155: phosphorelay sensor kinase activity	1.98E-03
34	GO:0005262: calcium channel activity	1.98E-03
35	GO:0004175: endopeptidase activity	2.14E-03
36	GO:0005217: intracellular ligand-gated ion channel activity	2.31E-03
37	GO:0017025: TBP-class protein binding	2.31E-03
38	GO:0004970: ionotropic glutamate receptor activity	2.31E-03
39	GO:0015144: carbohydrate transmembrane transporter activity	2.38E-03
40	GO:0005351: sugar:proton symporter activity	2.68E-03
41	GO:0043424: protein histidine kinase binding	2.85E-03
42	GO:0004197: cysteine-type endopeptidase activity	5.13E-03
43	GO:0000156: phosphorelay response regulator activity	5.37E-03
44	GO:0030247: polysaccharide binding	7.08E-03
45	GO:0003993: acid phosphatase activity	9.25E-03
46	GO:0016887: ATPase activity	1.19E-02
47	GO:0051287: NAD binding	1.23E-02
48	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.59E-02
49	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.59E-02
50	GO:0016874: ligase activity	1.63E-02
51	GO:0016301: kinase activity	2.33E-02
52	GO:0008194: UDP-glycosyltransferase activity	2.71E-02
53	GO:0042802: identical protein binding	2.97E-02
54	GO:0000287: magnesium ion binding	3.37E-02
55	GO:0016788: hydrolase activity, acting on ester bonds	3.46E-02
56	GO:0003682: chromatin binding	3.55E-02
57	GO:0004674: protein serine/threonine kinase activity	3.97E-02
58	GO:0061630: ubiquitin protein ligase activity	4.13E-02
59	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	2.45E-05
2	GO:0042406: extrinsic component of endoplasmic reticulum membrane	1.95E-04
3	GO:0000323: lytic vacuole	2.85E-04
4	GO:0005847: mRNA cleavage and polyadenylation specificity factor complex	4.88E-04
5	GO:0030173: integral component of Golgi membrane	7.13E-04
6	GO:0031597: cytosolic proteasome complex	7.13E-04
7	GO:0000815: ESCRT III complex	7.13E-04
8	GO:0031595: nuclear proteasome complex	8.33E-04
9	GO:0008540: proteasome regulatory particle, base subcomplex	1.36E-03
10	GO:0030176: integral component of endoplasmic reticulum membrane	2.31E-03
11	GO:0016021: integral component of membrane	2.47E-03
12	GO:0005777: peroxisome	2.60E-03
13	GO:0000785: chromatin	5.13E-03
14	GO:0005783: endoplasmic reticulum	5.14E-03
15	GO:0000151: ubiquitin ligase complex	7.60E-03
16	GO:0016020: membrane	1.13E-02
17	GO:0000502: proteasome complex	1.32E-02
18	GO:0012505: endomembrane system	1.66E-02
19	GO:0005623: cell	2.03E-02
20	GO:0009705: plant-type vacuole membrane	2.50E-02
21	GO:0005774: vacuolar membrane	2.57E-02
22	GO:0048046: apoplast	2.73E-02
23	GO:0005789: endoplasmic reticulum membrane	4.22E-02
24	GO:0005773: vacuole	4.35E-02
25	GO:0009506: plasmodesma	4.67E-02