GO Enrichment Analysis of Co-expressed Genes with
AT2G20860
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 4 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 5 | GO:0006642: triglyceride mobilization | 0.00E+00 |
| 6 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 7 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 8 | GO:0009658: chloroplast organization | 8.49E-08 |
| 9 | GO:0032544: plastid translation | 8.93E-07 |
| 10 | GO:0015979: photosynthesis | 5.24E-06 |
| 11 | GO:0010190: cytochrome b6f complex assembly | 2.49E-05 |
| 12 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 2.49E-05 |
| 13 | GO:0042549: photosystem II stabilization | 2.49E-05 |
| 14 | GO:0006096: glycolytic process | 3.75E-05 |
| 15 | GO:0071482: cellular response to light stimulus | 7.89E-05 |
| 16 | GO:0043489: RNA stabilization | 1.06E-04 |
| 17 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.06E-04 |
| 18 | GO:1904964: positive regulation of phytol biosynthetic process | 1.06E-04 |
| 19 | GO:0046166: glyceraldehyde-3-phosphate biosynthetic process | 1.06E-04 |
| 20 | GO:0009073: aromatic amino acid family biosynthetic process | 1.65E-04 |
| 21 | GO:0006352: DNA-templated transcription, initiation | 1.65E-04 |
| 22 | GO:0006094: gluconeogenesis | 2.19E-04 |
| 23 | GO:0009662: etioplast organization | 2.48E-04 |
| 24 | GO:0010270: photosystem II oxygen evolving complex assembly | 2.48E-04 |
| 25 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.48E-04 |
| 26 | GO:0019563: glycerol catabolic process | 4.12E-04 |
| 27 | GO:0032504: multicellular organism reproduction | 4.12E-04 |
| 28 | GO:0010581: regulation of starch biosynthetic process | 4.12E-04 |
| 29 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 4.12E-04 |
| 30 | GO:0010731: protein glutathionylation | 5.92E-04 |
| 31 | GO:0006424: glutamyl-tRNA aminoacylation | 5.92E-04 |
| 32 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 5.92E-04 |
| 33 | GO:2001141: regulation of RNA biosynthetic process | 5.92E-04 |
| 34 | GO:0016556: mRNA modification | 5.92E-04 |
| 35 | GO:0006412: translation | 7.02E-04 |
| 36 | GO:0071483: cellular response to blue light | 7.86E-04 |
| 37 | GO:0006808: regulation of nitrogen utilization | 7.86E-04 |
| 38 | GO:0015976: carbon utilization | 7.86E-04 |
| 39 | GO:0051781: positive regulation of cell division | 7.86E-04 |
| 40 | GO:0006661: phosphatidylinositol biosynthetic process | 7.86E-04 |
| 41 | GO:0000304: response to singlet oxygen | 9.92E-04 |
| 42 | GO:0032543: mitochondrial translation | 9.92E-04 |
| 43 | GO:0006564: L-serine biosynthetic process | 9.92E-04 |
| 44 | GO:0010236: plastoquinone biosynthetic process | 9.92E-04 |
| 45 | GO:0045038: protein import into chloroplast thylakoid membrane | 9.92E-04 |
| 46 | GO:0031365: N-terminal protein amino acid modification | 9.92E-04 |
| 47 | GO:0006461: protein complex assembly | 9.92E-04 |
| 48 | GO:0006413: translational initiation | 1.06E-03 |
| 49 | GO:0010027: thylakoid membrane organization | 1.19E-03 |
| 50 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.21E-03 |
| 51 | GO:0000470: maturation of LSU-rRNA | 1.21E-03 |
| 52 | GO:0006828: manganese ion transport | 1.21E-03 |
| 53 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.45E-03 |
| 54 | GO:0010189: vitamin E biosynthetic process | 1.45E-03 |
| 55 | GO:0009854: oxidative photosynthetic carbon pathway | 1.45E-03 |
| 56 | GO:0018298: protein-chromophore linkage | 1.54E-03 |
| 57 | GO:0009645: response to low light intensity stimulus | 1.70E-03 |
| 58 | GO:0006400: tRNA modification | 1.70E-03 |
| 59 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.70E-03 |
| 60 | GO:0010196: nonphotochemical quenching | 1.70E-03 |
| 61 | GO:0009704: de-etiolation | 1.97E-03 |
| 62 | GO:0008610: lipid biosynthetic process | 1.97E-03 |
| 63 | GO:0019430: removal of superoxide radicals | 2.24E-03 |
| 64 | GO:0009657: plastid organization | 2.24E-03 |
| 65 | GO:0009051: pentose-phosphate shunt, oxidative branch | 2.53E-03 |
| 66 | GO:0006098: pentose-phosphate shunt | 2.53E-03 |
| 67 | GO:0006457: protein folding | 2.68E-03 |
| 68 | GO:0009636: response to toxic substance | 2.80E-03 |
| 69 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.84E-03 |
| 70 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.84E-03 |
| 71 | GO:0048829: root cap development | 3.15E-03 |
| 72 | GO:0045036: protein targeting to chloroplast | 3.15E-03 |
| 73 | GO:0043085: positive regulation of catalytic activity | 3.47E-03 |
| 74 | GO:0006816: calcium ion transport | 3.47E-03 |
| 75 | GO:0032259: methylation | 4.07E-03 |
| 76 | GO:0006006: glucose metabolic process | 4.16E-03 |
| 77 | GO:0009767: photosynthetic electron transport chain | 4.16E-03 |
| 78 | GO:0010207: photosystem II assembly | 4.52E-03 |
| 79 | GO:0010020: chloroplast fission | 4.52E-03 |
| 80 | GO:0019253: reductive pentose-phosphate cycle | 4.52E-03 |
| 81 | GO:0090351: seedling development | 4.88E-03 |
| 82 | GO:0010025: wax biosynthetic process | 5.26E-03 |
| 83 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.05E-03 |
| 84 | GO:0016575: histone deacetylation | 6.05E-03 |
| 85 | GO:0031408: oxylipin biosynthetic process | 6.46E-03 |
| 86 | GO:0003333: amino acid transmembrane transport | 6.46E-03 |
| 87 | GO:0061077: chaperone-mediated protein folding | 6.46E-03 |
| 88 | GO:0016117: carotenoid biosynthetic process | 8.19E-03 |
| 89 | GO:0055114: oxidation-reduction process | 8.28E-03 |
| 90 | GO:0009409: response to cold | 8.37E-03 |
| 91 | GO:0009451: RNA modification | 8.39E-03 |
| 92 | GO:0080022: primary root development | 8.64E-03 |
| 93 | GO:0048868: pollen tube development | 9.10E-03 |
| 94 | GO:0008654: phospholipid biosynthetic process | 1.01E-02 |
| 95 | GO:0016032: viral process | 1.11E-02 |
| 96 | GO:0071805: potassium ion transmembrane transport | 1.26E-02 |
| 97 | GO:0042254: ribosome biogenesis | 1.30E-02 |
| 98 | GO:0001666: response to hypoxia | 1.37E-02 |
| 99 | GO:0042128: nitrate assimilation | 1.48E-02 |
| 100 | GO:0015995: chlorophyll biosynthetic process | 1.54E-02 |
| 101 | GO:0009817: defense response to fungus, incompatible interaction | 1.65E-02 |
| 102 | GO:0009407: toxin catabolic process | 1.77E-02 |
| 103 | GO:0009631: cold acclimation | 1.83E-02 |
| 104 | GO:0006865: amino acid transport | 1.89E-02 |
| 105 | GO:0045087: innate immune response | 1.95E-02 |
| 106 | GO:0009637: response to blue light | 1.95E-02 |
| 107 | GO:0009853: photorespiration | 1.95E-02 |
| 108 | GO:0010114: response to red light | 2.34E-02 |
| 109 | GO:0009644: response to high light intensity | 2.47E-02 |
| 110 | GO:0008152: metabolic process | 2.57E-02 |
| 111 | GO:0006855: drug transmembrane transport | 2.61E-02 |
| 112 | GO:0006813: potassium ion transport | 2.89E-02 |
| 113 | GO:0006417: regulation of translation | 3.11E-02 |
| 114 | GO:0048316: seed development | 3.33E-02 |
| 115 | GO:0006396: RNA processing | 3.80E-02 |
| 116 | GO:0042744: hydrogen peroxide catabolic process | 4.78E-02 |
| 117 | GO:0009790: embryo development | 4.87E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 3 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 4 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 5 | GO:0005048: signal sequence binding | 0.00E+00 |
| 6 | GO:0046608: carotenoid isomerase activity | 0.00E+00 |
| 7 | GO:0004561: alpha-N-acetylglucosaminidase activity | 0.00E+00 |
| 8 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 9 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 10 | GO:0005528: FK506 binding | 1.53E-07 |
| 11 | GO:0019843: rRNA binding | 1.80E-07 |
| 12 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.11E-07 |
| 13 | GO:0001053: plastid sigma factor activity | 9.95E-06 |
| 14 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 9.95E-06 |
| 15 | GO:0016987: sigma factor activity | 9.95E-06 |
| 16 | GO:0009496: plastoquinol--plastocyanin reductase activity | 1.06E-04 |
| 17 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 1.06E-04 |
| 18 | GO:0005080: protein kinase C binding | 1.06E-04 |
| 19 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.06E-04 |
| 20 | GO:0004807: triose-phosphate isomerase activity | 1.06E-04 |
| 21 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.06E-04 |
| 22 | GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity | 1.06E-04 |
| 23 | GO:0017169: CDP-alcohol phosphatidyltransferase activity | 1.06E-04 |
| 24 | GO:0031072: heat shock protein binding | 2.19E-04 |
| 25 | GO:0004802: transketolase activity | 2.48E-04 |
| 26 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.48E-04 |
| 27 | GO:0015079: potassium ion transmembrane transporter activity | 3.85E-04 |
| 28 | GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | 4.12E-04 |
| 29 | GO:0017150: tRNA dihydrouridine synthase activity | 4.12E-04 |
| 30 | GO:0051082: unfolded protein binding | 5.89E-04 |
| 31 | GO:0048487: beta-tubulin binding | 5.92E-04 |
| 32 | GO:0043023: ribosomal large subunit binding | 5.92E-04 |
| 33 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 7.86E-04 |
| 34 | GO:0010328: auxin influx transmembrane transporter activity | 7.86E-04 |
| 35 | GO:0043495: protein anchor | 7.86E-04 |
| 36 | GO:0003735: structural constituent of ribosome | 1.08E-03 |
| 37 | GO:0004332: fructose-bisphosphate aldolase activity | 1.21E-03 |
| 38 | GO:0016168: chlorophyll binding | 1.26E-03 |
| 39 | GO:0003743: translation initiation factor activity | 1.41E-03 |
| 40 | GO:0019899: enzyme binding | 1.70E-03 |
| 41 | GO:0004620: phospholipase activity | 1.70E-03 |
| 42 | GO:0008235: metalloexopeptidase activity | 1.70E-03 |
| 43 | GO:0008168: methyltransferase activity | 1.91E-03 |
| 44 | GO:0008312: 7S RNA binding | 1.97E-03 |
| 45 | GO:0004033: aldo-keto reductase (NADP) activity | 1.97E-03 |
| 46 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 2.24E-03 |
| 47 | GO:0004364: glutathione transferase activity | 2.40E-03 |
| 48 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.70E-03 |
| 49 | GO:0005384: manganese ion transmembrane transporter activity | 2.84E-03 |
| 50 | GO:0008047: enzyme activator activity | 3.15E-03 |
| 51 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.35E-03 |
| 52 | GO:0004177: aminopeptidase activity | 3.47E-03 |
| 53 | GO:0015386: potassium:proton antiporter activity | 3.47E-03 |
| 54 | GO:0004089: carbonate dehydratase activity | 4.16E-03 |
| 55 | GO:0015095: magnesium ion transmembrane transporter activity | 4.16E-03 |
| 56 | GO:0008266: poly(U) RNA binding | 4.52E-03 |
| 57 | GO:0031409: pigment binding | 5.26E-03 |
| 58 | GO:0003723: RNA binding | 5.47E-03 |
| 59 | GO:0004407: histone deacetylase activity | 5.65E-03 |
| 60 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 6.46E-03 |
| 61 | GO:0022891: substrate-specific transmembrane transporter activity | 7.30E-03 |
| 62 | GO:0003756: protein disulfide isomerase activity | 7.74E-03 |
| 63 | GO:0050662: coenzyme binding | 9.58E-03 |
| 64 | GO:0004791: thioredoxin-disulfide reductase activity | 9.58E-03 |
| 65 | GO:0016740: transferase activity | 1.15E-02 |
| 66 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.16E-02 |
| 67 | GO:0016597: amino acid binding | 1.31E-02 |
| 68 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.59E-02 |
| 69 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.59E-02 |
| 70 | GO:0015238: drug transmembrane transporter activity | 1.71E-02 |
| 71 | GO:0030145: manganese ion binding | 1.83E-02 |
| 72 | GO:0042803: protein homodimerization activity | 1.98E-02 |
| 73 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.02E-02 |
| 74 | GO:0050661: NADP binding | 2.14E-02 |
| 75 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.14E-02 |
| 76 | GO:0043621: protein self-association | 2.47E-02 |
| 77 | GO:0004519: endonuclease activity | 2.54E-02 |
| 78 | GO:0015293: symporter activity | 2.54E-02 |
| 79 | GO:0051287: NAD binding | 2.68E-02 |
| 80 | GO:0015171: amino acid transmembrane transporter activity | 3.11E-02 |
| 81 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.33E-02 |
| 82 | GO:0016874: ligase activity | 3.56E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.98E-47 |
| 2 | GO:0009941: chloroplast envelope | 1.13E-25 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 9.84E-20 |
| 4 | GO:0009570: chloroplast stroma | 1.54E-17 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 6.05E-14 |
| 6 | GO:0009579: thylakoid | 6.13E-12 |
| 7 | GO:0031977: thylakoid lumen | 3.75E-07 |
| 8 | GO:0031969: chloroplast membrane | 3.56E-06 |
| 9 | GO:0009534: chloroplast thylakoid | 8.99E-06 |
| 10 | GO:0009523: photosystem II | 4.38E-05 |
| 11 | GO:0009782: photosystem I antenna complex | 1.06E-04 |
| 12 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.06E-04 |
| 13 | GO:0080085: signal recognition particle, chloroplast targeting | 2.48E-04 |
| 14 | GO:0000312: plastid small ribosomal subunit | 2.49E-04 |
| 15 | GO:0030095: chloroplast photosystem II | 2.49E-04 |
| 16 | GO:0009654: photosystem II oxygen evolving complex | 3.85E-04 |
| 17 | GO:0009706: chloroplast inner membrane | 5.89E-04 |
| 18 | GO:0019898: extrinsic component of membrane | 7.87E-04 |
| 19 | GO:0009512: cytochrome b6f complex | 9.92E-04 |
| 20 | GO:0005840: ribosome | 1.33E-03 |
| 21 | GO:0009533: chloroplast stromal thylakoid | 1.70E-03 |
| 22 | GO:0009536: plastid | 1.75E-03 |
| 23 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.24E-03 |
| 24 | GO:0009508: plastid chromosome | 4.16E-03 |
| 25 | GO:0030659: cytoplasmic vesicle membrane | 4.52E-03 |
| 26 | GO:0030076: light-harvesting complex | 4.88E-03 |
| 27 | GO:0043234: protein complex | 5.26E-03 |
| 28 | GO:0042651: thylakoid membrane | 6.05E-03 |
| 29 | GO:0015935: small ribosomal subunit | 6.46E-03 |
| 30 | GO:0009532: plastid stroma | 6.46E-03 |
| 31 | GO:0022627: cytosolic small ribosomal subunit | 1.09E-02 |
| 32 | GO:0009295: nucleoid | 1.26E-02 |
| 33 | GO:0030529: intracellular ribonucleoprotein complex | 1.37E-02 |
| 34 | GO:0016020: membrane | 1.66E-02 |
| 35 | GO:0043231: intracellular membrane-bounded organelle | 2.57E-02 |
| 36 | GO:0010287: plastoglobule | 4.20E-02 |
| 37 | GO:0005623: cell | 4.45E-02 |